Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003483

Physical Location & Seq

Genomic Coordinates Forward (+)

28054005 .. 28071013

Gene Structure 17009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG277100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGGAACGAGTACCGAGAAAACCTGCGGAGGGACGATGACGAGTTCTTCAACAGGAGTACAAGTGGTTCCAACTTCCAACCTGTGCATGACCTCACCATTGGAGTCAAGTTCGGAGCTCGCATGGTCACCATTGAAGCTAAGCCCACACTGAACTTGGCTGCTGTCAGATGGGTTGGTGGTGTTGAGTTAGAAATAATTGCAATAGCCACAGGTGATGGTCATAAGAAACCTATAAGCAAGGCCAAGGTCATGAAGGTGGGATTGATATTTACTGTCGAAGCTCCTCTTCATGCCTCAAATGTGCAAGTTGTTGATCCAGTAACAAGACTCAACAAGATAAAACCCCGATACTTGAAAACCGATTCTATTCATTTTCCAGCTGCTTTCAACCTCTCTGTTATTACCACGATCATGGACGCCACGTTCCCACCATCAGATATATCTGTTACAGACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0006810 GO:0006888 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0030100 GO:0031410 GO:0031982 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048193 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04152 map04152

Pfam Domains

Protein Families

Ras

Protein Analysis

153

Amino Acids

16.94

Weight (kDa)

8.96

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ribosomal_L24	PF17136	83 - 109	7.2e-06	Large ribosomal subunit protein uL24, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701
rosa_multiflora	Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233470 Rroxscaffold_3G00234220
rosa_samantha	Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900
rosa_wichuraiana	Rw3G022420 Rw4G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	33
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	2 cut(s)	14, 61
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	4 cut(s)	52, 137, 358, 391
AloI	GAACNNNNNNTCC	2 cut(s)	410, 442
AluBI	AGCT	4 cut(s)	119, 140, 284, 383
AluI	AGCT	4 cut(s)	119, 140, 284, 383
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	161, 383
AsuHPI	GGTGA	3 cut(s)	88, 121, 227
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	148, 370
BccI	CCATC	3 cut(s)	165, 212, 442
BfuAI	ACCTGC	1 cut(s)	33
BisI	GCNGC	2 cut(s)	162, 384
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	2 cut(s)	163, 385
BmiI	GGNNCC	1 cut(s)	70
Bpu1102I	GCTNAGC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	148, 370
BshFI	GGCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	316, 411
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	316, 411
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	141
BstEII	GGTNACC	1 cut(s)	127
BstKTI	GATC	2 cut(s)	319, 414
BstMBI	GATC	2 cut(s)	316, 411
BstPI	GGTNACC	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	148, 370
BstXI	CCANNNNNNTGG	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	252
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	13, 60
CviAII	CATG	5 cut(s)	89, 124, 253, 293, 415
CviJI	RGCY	8 cut(s)	119, 140, 145, 161, 209, 245, 284, 383
CviKI_1	RGCY	8 cut(s)	119, 140, 145, 161, 209, 245, 284, 383
CviQI	GTAC	2 cut(s)	13, 60
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	2 cut(s)	318, 413
DpnII	GATC	2 cut(s)	316, 411
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	5 cut(s)	92, 127, 256, 296, 418
FaiI	YATR	8 cut(s)	90, 125, 225, 236, 254, 294, 416, 443
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	5 cut(s)	88, 123, 252, 292, 414
Fnu4HI	GCNGC	2 cut(s)	162, 384
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	162, 384
GluI	GCNGC	2 cut(s)	162, 384
HaeIII	GGCC	1 cut(s)	245
HgaI	GACGC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	5 cut(s)	92, 127, 256, 296, 418
HinfI	GANTC	4 cut(s)	105, 330, 365, 455
HphI	GGTGA	3 cut(s)	88, 121, 227
Hpy188I	TCNGA	3 cut(s)	116, 170, 439
Hpy188III	TCNNGA	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	88, 203, 307
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	425
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	92, 127, 256, 296, 418
Kzo9I	GATC	2 cut(s)	316, 411
LmnI	GCTCC	2 cut(s)	116, 289
LpnPI	CCDG	6 cut(s)	38, 40, 96, 198, 333, 393
Lsp1109I	GCAGC	2 cut(s)	148, 370
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	3 cut(s)	127, 322, 448
MalI	GATC	2 cut(s)	318, 413
MboI	GATC	2 cut(s)	316, 411
MboII	GAAGA	2 cut(s)	40, 281
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	3 cut(s)	114, 324, 449
MmeI	TCCRAC	2 cut(s)	96, 103
MnlI	CCTC	5 cut(s)	24, 104, 297, 307, 404
MslI	CAYNNNNRTG	2 cut(s)	257, 413
MspA1I	CMGCKG	1 cut(s)	383
NdeII	GATC	2 cut(s)	316, 411
NlaIII	CATG	5 cut(s)	92, 127, 256, 296, 418
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	127
PagI	TCATGA	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	163, 385
PleI	GAGTC	3 cut(s)	113, 324, 449
PpsI	GAGTC	3 cut(s)	113, 324, 449
Psp124BI	GAGCTC	1 cut(s)	121
PspEI	GGTNACC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	70
PsrI	GAACNNNNNNTAC	2 cut(s)	52, 84
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	14, 61
RsaNI	GTAC	2 cut(s)	13, 60
RseI	CAYNNNNRTG	2 cut(s)	257, 413
SacI	GAGCTC	1 cut(s)	121
SatI	GCNGC	2 cut(s)	162, 384
Sau3AI	GATC	2 cut(s)	316, 411
SchI	GAGTC	3 cut(s)	114, 324, 449
SduI	GDGCHC	1 cut(s)	121
SmiMI	CAYNNNNRTG	2 cut(s)	257, 413
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	1 cut(s)	28
SstI	GAGCTC	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	279
TasI	AATT	1 cut(s)	198
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	365
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	161, 383
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	269, 281, 362
TspRI	CASTG	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.