CCR4-NOT transcription complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701 |
| rosa_multiflora | Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00233470 Rroxscaffold_3G00234220 |
| rosa_samantha | Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900 |
| rosa_wichuraiana | Rw3G022420 Rw4G018200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 205 |
| AciI | CCGC | 2 cut(s) | 45, 205 |
| AfaI | GTAC | 2 cut(s) | 83, 269 |
| AgsI | TTSAA | 1 cut(s) | 73 |
| AluBI | AGCT | 2 cut(s) | 157, 172 |
| AluI | AGCT | 2 cut(s) | 157, 172 |
| AoxI | GGCC | 2 cut(s) | 42, 232 |
| ApeKI | GCWGC | 1 cut(s) | 169 |
| AspLEI | GCGC | 1 cut(s) | 116 |
| AsuHPI | GGTGA | 1 cut(s) | 196 |
| BbvI | GCAGC | 1 cut(s) | 181 |
| BccI | CCATC | 1 cut(s) | 290 |
| BfaI | CTAG | 2 cut(s) | 5, 122 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 50 |
| BisI | GCNGC | 2 cut(s) | 45, 170 |
| BlsI | GCNGC | 2 cut(s) | 46, 171 |
| BsaJI | CCNNGG | 1 cut(s) | 48 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 194, 224 |
| Bse3DI | GCAATG | 1 cut(s) | 132 |
| BseDI | CCNNGG | 1 cut(s) | 48 |
| BseMI | GCAATG | 1 cut(s) | 132 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| BseXI | GCAGC | 1 cut(s) | 181 |
| BshFI | GGCC | 2 cut(s) | 44, 234 |
| BsmI | GAATGC | 1 cut(s) | 94 |
| BsnI | GGCC | 2 cut(s) | 44, 234 |
| BspACI | CCGC | 2 cut(s) | 45, 205 |
| BspANI | GGCC | 2 cut(s) | 44, 234 |
| BsrBI | CCGCTC | 1 cut(s) | 205 |
| BsrDI | GCAATG | 1 cut(s) | 132 |
| BssECI | CCNNGG | 1 cut(s) | 48 |
| BssT1I | CCWWGG | 1 cut(s) | 48 |
| Bst4CI | ACNGT | 1 cut(s) | 229 |
| BstC8I | GCNNGC | 1 cut(s) | 155 |
| BstHHI | GCGC | 1 cut(s) | 116 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 50, 122, 240 |
| BstV1I | GCAGC | 1 cut(s) | 181 |
| BsuRI | GGCC | 2 cut(s) | 44, 234 |
| BtsI | GCAGTG | 1 cut(s) | 250 |
| BtsIMutI | CAGTG | 1 cut(s) | 250 |
| Cac8I | GCNNGC | 1 cut(s) | 155 |
| CfoI | GCGC | 1 cut(s) | 116 |
| Csp6I | GTAC | 2 cut(s) | 82, 268 |
| CviAII | CATG | 2 cut(s) | 107, 280 |
| CviJI | RGCY | 6 cut(s) | 44, 53, 59, 157, 172, 234 |
| CviKI_1 | RGCY | 6 cut(s) | 44, 53, 59, 157, 172, 234 |
| CviQI | GTAC | 2 cut(s) | 82, 268 |
| Eco130I | CCWWGG | 1 cut(s) | 48 |
| EcoT14I | CCWWGG | 1 cut(s) | 48 |
| ErhI | CCWWGG | 1 cut(s) | 48 |
| FaeI | CATG | 2 cut(s) | 110, 283 |
| FaiI | YATR | 3 cut(s) | 108, 239, 281 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 146, 178 |
| FatI | CATG | 2 cut(s) | 106, 279 |
| Fnu4HI | GCNGC | 2 cut(s) | 45, 170 |
| Fsp4HI | GCNGC | 2 cut(s) | 45, 170 |
| FspBI | CTAG | 2 cut(s) | 5, 122 |
| GlaI | GCGC | 1 cut(s) | 115 |
| GluI | GCNGC | 2 cut(s) | 45, 170 |
| HaeIII | GGCC | 2 cut(s) | 44, 234 |
| HhaI | GCGC | 1 cut(s) | 116 |
| Hin1II | CATG | 2 cut(s) | 110, 283 |
| Hin6I | GCGC | 1 cut(s) | 114 |
| HinP1I | GCGC | 1 cut(s) | 114 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| HinfI | GANTC | 3 cut(s) | 10, 103, 139 |
| HphI | GGTGA | 1 cut(s) | 196 |
| Hpy166II | GTNNAC | 2 cut(s) | 248, 277 |
| Hpy188I | TCNGA | 2 cut(s) | 15, 196 |
| Hpy188III | TCNNGA | 3 cut(s) | 21, 35, 143 |
| Hpy8I | GTNNAC | 2 cut(s) | 248, 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 229 |
| HpyCH4V | TGCA | 3 cut(s) | 92, 153, 263 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 50, 122, 240 |
| Hsp92II | CATG | 2 cut(s) | 110, 283 |
| HspAI | GCGC | 1 cut(s) | 114 |
| LmnI | GCTCC | 1 cut(s) | 202 |
| LpnPI | CCDG | 2 cut(s) | 34, 113 |
| Lsp1109I | GCAGC | 1 cut(s) | 181 |
| MaeI | CTAG | 2 cut(s) | 5, 122 |
| MbiI | CCGCTC | 1 cut(s) | 205 |
| MluCI | AATT | 1 cut(s) | 222 |
| MnlI | CCTC | 2 cut(s) | 34, 193 |
| MseI | TTAA | 2 cut(s) | 213, 310 |
| Mva1269I | GAATGC | 1 cut(s) | 94 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 50, 122, 240 |
| NlaIII | CATG | 2 cut(s) | 110, 283 |
| PctI | GAATGC | 1 cut(s) | 94 |
| PfeI | GAWTC | 3 cut(s) | 10, 103, 139 |
| PkrI | GCNGC | 2 cut(s) | 46, 171 |
| RsaI | GTAC | 2 cut(s) | 83, 269 |
| RsaNI | GTAC | 2 cut(s) | 82, 268 |
| SaqAI | TTAA | 2 cut(s) | 213, 310 |
| SatI | GCNGC | 2 cut(s) | 45, 170 |
| SetI | ASST | 4 cut(s) | 69, 159, 174, 261 |
| Sse9I | AATT | 1 cut(s) | 222 |
| SsiI | CCGC | 2 cut(s) | 45, 205 |
| SspMI | CTAG | 2 cut(s) | 5, 122 |
| StyI | CCWWGG | 1 cut(s) | 48 |
| TaaI | ACNGT | 1 cut(s) | 229 |
| TaqI | TCGA | 1 cut(s) | 34 |
| TasI | AATT | 1 cut(s) | 222 |
| TatI | WGTACW | 1 cut(s) | 267 |
| TauI | GCSGC | 1 cut(s) | 47 |
| TfiI | GAWTC | 3 cut(s) | 10, 103, 139 |
| Tru1I | TTAA | 2 cut(s) | 213, 310 |
| Tru9I | TTAA | 2 cut(s) | 213, 310 |
| TscAI | CASTG | 1 cut(s) | 250 |
| TseI | GCWGC | 1 cut(s) | 169 |
| TspDTI | ATGAA | 1 cut(s) | 95 |
| TspRI | CASTG | 1 cut(s) | 250 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 107 |
| XspI | CTAG | 2 cut(s) | 5, 122 |