Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003483

Physical Location & Seq

Genomic Coordinates Forward (+)

50488745 .. 50489533

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG372800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCACCTGCGGTAGCAACAATTGACGGGGAAATAGGTCCGCAGCTTTCAGTAAGAAGAAAGAGAGAAGGTGTTGGTGCAACCTATTTTGATGCAAACATGTATCCACAAGGTTCTATGGGGGTTGTGCCAGAAGCTCTCCGCCCTAAACCTGGTCATTTGTCCCTTTCTCAGCAACGAGTTTATGAGGATTTTGTTCGGCTTCCCTGGCAAAACCAATCTATTCAAAGTTCGCACGTTCTGCCACTTGTAGTACTGGTCTCACTAGCACATATGGTTCAGCATCCGGACAACTTAACACGGGCTACTCACCAGGACCTGGAAGCAAATTTGAAGATGTTTCTCGTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

117

Amino Acids

13.04

Weight (kDa)

7.02

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701
rosa_multiflora	Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233470 Rroxscaffold_3G00234220
rosa_samantha	Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900
rosa_wichuraiana	Rw3G022420 Rw4G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	319
AccIII	TCCGGA	1 cut(s)	286
AciI	CCGC	3 cut(s)	11, 41, 142
AcsI	RAATTY	1 cut(s)	328
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	152, 319
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	227, 334
AjnI	CCWGG	4 cut(s)	151, 206, 312, 318
AluBI	AGCT	2 cut(s)	46, 137
AluI	AGCT	2 cut(s)	46, 137
Alw26I	GTCTC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	319
Aor13HI	TCCGGA	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	38, 316
AsuHPI	GGTGA	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	38, 316
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	55
BciT130I	CCWGG	4 cut(s)	153, 208, 314, 320
BciVI	GTATCC	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
BmcAI	AGTACT	1 cut(s)	255
Bme1390I	CCNGG	4 cut(s)	153, 208, 314, 320
Bme18I	GGWCC	2 cut(s)	38, 316
BmgT120I	GGNCC	2 cut(s)	38, 316
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	153, 208, 314, 320
BmsI	GCATC	2 cut(s)	82, 292
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 319
Bse1I	ACTGG	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	4 cut(s)	153, 208, 314, 320
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	152, 319
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	152, 319
BsmAI	GTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	265
Bsp13I	TCCGGA	1 cut(s)	286
BspACI	CCGC	3 cut(s)	11, 41, 142
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	206
Bst2UI	CCWGG	4 cut(s)	153, 208, 314, 320
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	283
BstMAI	GTCTC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 241
BstNI	CCWGG	4 cut(s)	153, 208, 314, 320
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	4 cut(s)	151, 206, 312, 318
BstV1I	GCAGC	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	283
BveI	ACCTGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	38, 316
CsiI	ACCWGGT	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	4 cut(s)	46, 137, 202, 305
CviKI_1	RGCY	4 cut(s)	46, 137, 202, 305
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	38, 316
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	4 cut(s)	151, 206, 312, 318
FaeI	CATG	1 cut(s)	103
FaiI	YATR	5 cut(s)	101, 119, 186, 273, 275
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	1 cut(s)	44
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	1 cut(s)	103
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	302
Hpy188III	TCNNGA	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	80, 95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 241
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	286
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	2 cut(s)	82, 292
MabI	ACCWGGT	1 cut(s)	151
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	237
MboII	GAAGA	2 cut(s)	69, 346
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	2 cut(s)	21, 328
MnlI	CCTC	1 cut(s)	181
MroI	TCCGGA	1 cut(s)	286
MseI	TTAA	1 cut(s)	296
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	4 cut(s)	153, 208, 314, 320
MunI	CAATTG	1 cut(s)	21
MvaI	CCWGG	4 cut(s)	153, 208, 314, 320
MwoI	GCNNNNNNNGC	2 cut(s)	208, 241
NdeI	CATATG	1 cut(s)	273
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	103
PaqCI	CACCTGC	1 cut(s)	16
PciI	ACATGT	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	45
PpuMI	RGGWCCY	1 cut(s)	316
PscI	ACATGT	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	4 cut(s)	151, 206, 312, 318
PspGI	CCWGG	4 cut(s)	151, 206, 312, 318
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	38, 316
PspPPI	RGGWCCY	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	44
Sau96I	GGNCC	2 cut(s)	38, 316
ScaI	AGTACT	1 cut(s)	255
ScrFI	CCNGG	4 cut(s)	153, 208, 314, 320
SexAI	ACCWGGT	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	82, 292
SinI	GGWCC	2 cut(s)	38, 316
Sse9I	AATT	2 cut(s)	21, 328
SsiI	CCGC	3 cut(s)	11, 41, 142
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	4 cut(s)	151, 206, 312, 318
TaiI	ACGT	1 cut(s)	240
TasI	AATT	2 cut(s)	21, 328
TatI	WGTACW	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseI	GCWGC	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	38, 316
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	1 cut(s)	103
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.