Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003483

Physical Location & Seq

Genomic Coordinates Forward (+)

60954551 .. 60981507

Gene Structure 26957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG430200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGATTCAAGGAGGGGACTTCGATAAGGGCAATGCAGTAGCAACAATTGACGGGGAAATAGGTCCGCAGCTTTCAGTAAGAAGAAAGAGAGAAGGTGTTGGTGCAACCTATTTTGATGCAAACATGTATCCACAAGGTTCTATGGGTGTTGTGCCAGAAGCTCTCCGCCCTAAACCTGGTCATTTGTCCCTTTCTCAGCAACGAGTTTATGAGGATTTTGTTCTGCTTCCCTGGCAAAACCAATCTATTCAAAGTTCGCACGTTCTGCCAGTTGCTACCACAGCTTCATCTGGTAGTACTGGTCTCACTACCACATATGGTTCAGCATCCGGACAACTTAACACGGGCTACTCACCAGGACCTGGAAGCAAATTTGAAGCTGTTTCTCGTCCATTAGATGAAGCGATGGAATCCAATTCTGCCCTCCATCTTAGTGCTTCATCTATTCATGTTGGGGCGGCTGATGGTGTTTCCCAGCATAGTTCTGAAAATGATTTTGTTGTTGCCTCATTTCCTTCTGCTGCTTCTGCCCCTGAGCTGCACTCTGTAGAGTCATCTGATGCTGTAAAGGAATCTGGAGTGTCCTCACAGCCACCACCTTCACCTGCTGTAACTGAACGTCTTGGAAGTCTCTCAGAACCTTCCCTCACCACAGGGGCTGCATTGGAAAAATACCAGATTGTTGCACAGAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

232

Amino Acids

24.09

Weight (kDa)

4.98

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701
rosa_multiflora	Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233470 Rroxscaffold_3G00234220
rosa_samantha	Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900
rosa_wichuraiana	Rw3G022420 Rw4G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	613
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccIII	TCCGGA	1 cut(s)	329
AciI	CCGC	3 cut(s)	65, 166, 458
AcsI	RAATTY	1 cut(s)	371
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	176, 362
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	8, 251, 377
AjnI	CCWGG	4 cut(s)	175, 230, 355, 361
AluBI	AGCT	5 cut(s)	70, 161, 284, 380, 538
AluI	AGCT	5 cut(s)	70, 161, 284, 380, 538
Alw26I	GTCTC	2 cut(s)	308, 635
AlwNI	CAGNNNCTG	2 cut(s)	362, 659
Aor13HI	TCCGGA	1 cut(s)	329
ApeKI	GCWGC	4 cut(s)	67, 521, 538, 659
ApoI	RAATTY	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	62, 359
AsuHPI	GGTGA	3 cut(s)	345, 594, 640
AvaII	GGWCC	2 cut(s)	62, 359
BbvI	GCAGC	4 cut(s)	79, 508, 525, 646
BccI	CCATC	3 cut(s)	400, 435, 458
BciT130I	CCWGG	4 cut(s)	177, 232, 357, 363
BciVI	GTATCC	1 cut(s)	138
BcoDI	GTCTC	2 cut(s)	308, 635
BfmI	CTRYAG	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	613
BfuI	GTATCC	1 cut(s)	138
BisI	GCNGC	5 cut(s)	68, 459, 522, 539, 660
BlsI	GCNGC	5 cut(s)	69, 460, 523, 540, 661
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	4 cut(s)	177, 232, 357, 363
Bme18I	GGWCC	2 cut(s)	62, 359
BmgT120I	GGNCC	2 cut(s)	62, 359
BmrFI	CCNGG	4 cut(s)	177, 232, 357, 363
BmsI	GCATC	3 cut(s)	106, 335, 550
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
BpmI	CTGGAG	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	534
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 362
Bse1I	ACTGG	2 cut(s)	269, 304
Bse3DI	GCAATG	1 cut(s)	37
BseAI	TCCGGA	1 cut(s)	329
BseBI	CCWGG	4 cut(s)	177, 232, 357, 363
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	2 cut(s)	176, 362
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	3 cut(s)	209, 525, 648
BseNI	ACTGG	2 cut(s)	269, 304
BseXI	GCAGC	4 cut(s)	79, 508, 525, 646
BseYI	CCCAGC	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	524
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	29, 172
BslI	CCNNNNNNNGG	2 cut(s)	176, 362
BsmAI	GTCTC	2 cut(s)	308, 635
BsmFI	GGGAC	2 cut(s)	29, 172
Bso31I	GGTCTC	1 cut(s)	308
Bsp13I	TCCGGA	1 cut(s)	329
BspACI	CCGC	3 cut(s)	65, 166, 458
BspCNI	CTCAG	3 cut(s)	208, 526, 647
BspEI	TCCGGA	1 cut(s)	329
BspMI	ACCTGC	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	269, 304
BssECI	CCNNGG	1 cut(s)	230
Bst2UI	CCWGG	4 cut(s)	177, 232, 357, 363
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstDEI	CTNAG	4 cut(s)	195, 431, 534, 634
BstF5I	GGATG	1 cut(s)	326
BstMAI	GTCTC	2 cut(s)	308, 635
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 265, 281, 527
BstNI	CCWGG	4 cut(s)	177, 232, 357, 363
BstNSI	RCATGY	1 cut(s)	127
BstSCI	CCNGG	4 cut(s)	175, 230, 355, 361
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	4 cut(s)	79, 508, 525, 646
BsuI	GTATCC	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	326
BveI	ACCTGC	1 cut(s)	613
CaiI	CAGNNNCTG	2 cut(s)	362, 659
Cfr13I	GGNCC	2 cut(s)	62, 359
CsiI	ACCWGGT	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	2 cut(s)	124, 449
CviJI	RGCY	9 cut(s)	70, 161, 284, 348, 380, 461, 538, 592, 659
CviKI_1	RGCY	9 cut(s)	70, 161, 284, 348, 380, 461, 538, 592, 659
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	4 cut(s)	195, 431, 534, 634
EciI	GGCGGA	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	308
Eco47I	GGWCC	2 cut(s)	62, 359
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	4 cut(s)	175, 230, 355, 361
FaeI	CATG	2 cut(s)	127, 452
FaiI	YATR	7 cut(s)	125, 143, 210, 316, 318, 450, 480
FaqI	GGGAC	2 cut(s)	29, 172
FatI	CATG	2 cut(s)	123, 448
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	5 cut(s)	68, 459, 522, 539, 660
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	5 cut(s)	68, 459, 522, 539, 660
GluI	GCNGC	5 cut(s)	68, 459, 522, 539, 660
GsaI	CCCAGC	1 cut(s)	478
GsuI	CTGGAG	1 cut(s)	597
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	2 cut(s)	127, 452
HinfI	GANTC	4 cut(s)	4, 410, 551, 572
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	3 cut(s)	345, 594, 640
Hpy188I	TCNGA	3 cut(s)	487, 559, 637
Hpy188III	TCNNGA	2 cut(s)	330, 576
HpyAV	CCTTC	5 cut(s)	86, 525, 609, 651, 685
HpyCH4IV	ACGT	2 cut(s)	261, 619
HpyCH4V	TGCA	6 cut(s)	35, 104, 119, 541, 662, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 265, 281, 527
HpyF3I	CTNAG	4 cut(s)	195, 431, 534, 634
HpySE526I	ACGT	2 cut(s)	261, 619
Hsp92II	CATG	2 cut(s)	127, 452
Kpn2I	TCCGGA	1 cut(s)	329
Lsp1109I	GCAGC	4 cut(s)	79, 508, 525, 646
LweI	GCATC	3 cut(s)	106, 335, 550
MabI	ACCWGGT	1 cut(s)	175
MaeII	ACGT	2 cut(s)	261, 619
MaeIII	GTNAC	1 cut(s)	610
MboII	GAAGA	1 cut(s)	93
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	3 cut(s)	45, 371, 415
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	6 cut(s)	5, 205, 434, 517, 595, 656
MroI	TCCGGA	1 cut(s)	329
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	4 cut(s)	177, 232, 357, 363
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	4 cut(s)	177, 232, 357, 363
MwoI	GCNNNNNNNGC	4 cut(s)	232, 265, 281, 527
NdeI	CATATG	1 cut(s)	316
NlaIII	CATG	2 cut(s)	127, 452
NspI	RCATGY	1 cut(s)	127
PaqCI	CACCTGC	1 cut(s)	613
PciI	ACATGT	1 cut(s)	123
PfeI	GAWTC	3 cut(s)	4, 410, 572
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	69, 460, 523, 540, 661
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PpuMI	RGGWCCY	1 cut(s)	359
PscI	ACATGT	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	4 cut(s)	175, 230, 355, 361
PspFI	CCCAGC	1 cut(s)	474
PspGI	CCWGG	4 cut(s)	175, 230, 355, 361
PspPI	GGNCC	2 cut(s)	62, 359
PspPPI	RGGWCCY	1 cut(s)	359
PstNI	CAGNNNCTG	2 cut(s)	362, 659
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	5 cut(s)	68, 459, 522, 539, 660
Sau96I	GGNCC	2 cut(s)	62, 359
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	4 cut(s)	177, 232, 357, 363
SexAI	ACCWGGT	1 cut(s)	175
SfaNI	GCATC	3 cut(s)	106, 335, 550
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	62, 359
SmiMI	CAYNNNNRTG	1 cut(s)	432
Sse9I	AATT	3 cut(s)	45, 371, 415
SsiI	CCGC	3 cut(s)	65, 166, 458
StyD4I	CCNGG	4 cut(s)	175, 230, 355, 361
TaiI	ACGT	2 cut(s)	264, 622
TaqI	TCGA	1 cut(s)	21
TasI	AATT	3 cut(s)	45, 371, 415
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	3 cut(s)	4, 410, 572
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseI	GCWGC	4 cut(s)	67, 521, 538, 659
TspDTI	ATGAA	4 cut(s)	276, 414, 429, 437
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	62, 359
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	1 cut(s)	127
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.