Rh3CG281000

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003483
Physical Location & Seq
Forward (+)
28229197 .. 28239130
9934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG281000.1

Sequence Viewer

Length: 363 bp
ATGAGGAACGAGTACCGAGAAAACCTGCGGAGGGACGATGACGAGTTCTTCAACGGGAGTACAAGTGGTTCCAACTTCCAACCTGTGCATGACCTCACCATTGGAGTCAAGTTCGGAGCTCGCATGGTCACCATTGAAGCTAAGCCCACACTGAACTTGGCTGCTGTCAGATGGGTTGGTGGTGTTGAGTTAGAAATAATTGCAATAGCTACAGGTGATGGTCATAAGAAACCTATAAGCAAGGCCAAGGTCATGAAGGTGGGATTGATATTTACTGTCGAAGCTCCTCTTCATGCCTCAAATGTGCAAGTTGTTGATCCAGTAACAAGGAGACCTTGTAAGGGTGGGGTTAAAATATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

120

Amino Acids

13.11

Weight (kDa)

9.46

Isoelectric Point (pI)

27.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ribosomal_L24 PF17136 82 - 118 1.4e-07 Large ribosomal subunit protein uL24, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
AciI CCGC 1 cut(s) 28
AclWI GGATC 1 cut(s) 311
AfaI GTAC 2 cut(s) 14, 61
AfiI CCNNNNNNNGG 2 cut(s) 31, 341
AgsI TTSAA 2 cut(s) 52, 137
AluBI AGCT 4 cut(s) 119, 140, 209, 284
AluI AGCT 4 cut(s) 119, 140, 209, 284
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 1 cut(s) 311
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 88, 121, 227
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 165, 212
BcoDI GTCTC 1 cut(s) 325
BfmI CTRYAG 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 33
BisI GCNGC 1 cut(s) 162
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 322, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 341
Bse1I ACTGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 31, 341
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 121
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 31, 341
BsmAI GTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 1 cut(s) 245
Bso31I GGTCTC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 316
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 245
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 33
BspPI GGATC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 325
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 127
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 1 cut(s) 316
BstPI GGTNACC 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 149
BveI ACCTGC 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 121
CciI TCATGA 1 cut(s) 252
Csp6I GTAC 2 cut(s) 13, 60
CviAII CATG 4 cut(s) 89, 124, 253, 293
CviJI RGCY 7 cut(s) 119, 140, 145, 161, 209, 245, 284
CviKI_1 RGCY 7 cut(s) 119, 140, 145, 161, 209, 245, 284
CviQI GTAC 2 cut(s) 13, 60
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 119
Eco91I GGTNACC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 92, 127, 256, 296
FaiI YATR 6 cut(s) 90, 125, 225, 236, 254, 294
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 319, 351
FaqI GGGAC 1 cut(s) 47
FatI CATG 4 cut(s) 88, 123, 252, 292
Fnu4HI GCNGC 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 245
Hin1II CATG 4 cut(s) 92, 127, 256, 296
HinfI GANTC 1 cut(s) 105
HphI GGTGA 3 cut(s) 88, 121, 227
Hpy188I TCNGA 2 cut(s) 116, 170
Hpy188III TCNNGA 2 cut(s) 253, 360
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 88, 203, 307
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 4 cut(s) 92, 127, 256, 296
Kzo9I GATC 1 cut(s) 316
LmnI GCTCC 2 cut(s) 116, 289
LpnPI CCDG 4 cut(s) 38, 96, 198, 333
Lsp1109I GCAGC 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 127, 322
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 2 cut(s) 40, 281
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 1 cut(s) 198
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 2 cut(s) 96, 103
MnlI CCTC 4 cut(s) 24, 104, 297, 307
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 257
NdeII GATC 1 cut(s) 316
NlaIII CATG 4 cut(s) 92, 127, 256, 296
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 127
PagI TCATGA 1 cut(s) 252
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp124BI GAGCTC 1 cut(s) 121
PspEI GGTNACC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 70
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
RsaI GTAC 2 cut(s) 14, 61
RsaNI GTAC 2 cut(s) 13, 60
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 316
SchI GAGTC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 1 cut(s) 198
SsiI CCGC 1 cut(s) 28
SstI GAGCTC 1 cut(s) 121
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 279
TasI AATT 1 cut(s) 198
TatI WGTACW 1 cut(s) 59
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 269, 281
TspRI CASTG 1 cut(s) 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.