Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004260

Physical Location & Seq

Genomic Coordinates Forward (+)

19382676 .. 19384037

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007646

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCAGAGGCTATGGTGGCTCGACTTGAGGTGGCACTTGCGCTGACGGATGACGCGGTGGTGGAGTTTGGGGCAGCCGAAGCAGTGGCTGTTGCTGCGTCCGGGTTTTATCTGATGGGTCGTATGTTGGCACCTAGGGCAAAGGATAATGGTGGTTTGCCCAAGGTGATGGCTGCAGTATGGGGCTTGCGTGATCGTCTCTCGATCACGAAGGTTGAGGGGGACGGGTTTCAGTTCCGGTTTGCGGTGAAAGAGGAAGGGACTACAGGGCTGGAATTGGGAGGTCAGGGGACTCTGGCGGTGGCTAGGACAGTGCTGGCTAAGGTGATCCTGCCAGAGACTGTTGGAGGTAGCGCTGGTGTTAATGTGACACCTACACCGATTCTGCTAGGGTCGATGGCAACAAGTGGAGGGCCAAATCTCATGGATATTGTTGGTTGGTCCATGGAGATGCTGAAGGGGATACCAAGCTGGAATGCTCCATGTCCCAGTCAATCTGGAGCCCCAATCCATCTTTCGGTGGCTACCATAGGCATAAGAGCAGCACAAGTAAGTGGCATGAAGCGCTCAGCTTTTTCTGTGCAAGCTCGTCCAGGTAAGAAGGCTAAACTGCGGCCTGATTCTTCTGCGTTAATGTGCTTGGATGTGGAGGAGGGTTTTGATTTACCTAATGATAATGGGAAAGTGCGAGTCTCACCTCTGAATACTAAGAGAGGTAGGCCGAAAGGGTCCAAGAATAAGTTGGGACCAAAGGTTCGTAGTAAGAGAGTGGTTCGAAAGCTTACTATCGACAAGAATGCTGAAGGACAGGGTGGAAATGACTTGGCTGTGATGGGAGATGCAAACCCAGTGGGGGAGAACGTGGTTTCTGAGGAGGTATGTGTGAGCCCTCTCCTGATGGGGATGGCTTTGGGTATAGCTCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

32.16

Weight (kDa)

9.25

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004260)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007646 RLG00000008043 RLG00000008044 RLG00000019654 RLG00000023898 RLG00000033256 RLG00000033669
rosa_multiflora	Rmu_sc0001544.1_g000023 Rmu_sc0006181.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093260
rosa_samantha	Rh1BG212600 Rh2AG404300 Rh2BG397500 Rh3AG108400 Rh5AG213700 Rh5BG212800 Rh5CG236000 Rh5CG236100 Rh5DG217200 Rh5DG217300 Rh6AG116800 Rh6AG116900 Rh6AG509900 Rh6BG110900 Rh6CG108500 Rh6DG098900 Rh6DG207600 Rh6DG510800 Rh7AG206200 Rh7BG210100 Rh7CG183200 Rh7DG213400
rosa_wichuraiana	Rw5G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccII	CGCG	1 cut(s)	56
AciI	CCGC	4 cut(s)	56, 245, 299, 613
AclWI	GGATC	1 cut(s)	322
AcuI	CTGAAG	2 cut(s)	476, 822
AfeI	AGCGCT	2 cut(s)	355, 566
AfiI	CCNNNNNNNGG	3 cut(s)	244, 517, 853
AjnI	CCWGG	1 cut(s)	592
AjuI	GAANNNNNNNTTGG	2 cut(s)	499, 531
AloI	GAACNNNNNNTCC	2 cut(s)	738, 770
AluBI	AGCT	5 cut(s)	471, 572, 587, 781, 920
AluI	AGCT	5 cut(s)	471, 572, 587, 781, 920
Alw26I	GTCTC	3 cut(s)	203, 332, 697
AlwI	GGATC	1 cut(s)	322
AlwNI	CAGNNNCTG	2 cut(s)	89, 341
Aor51HI	AGCGCT	2 cut(s)	355, 566
AoxI	GGCC	3 cut(s)	413, 614, 719
ApeKI	GCWGC	4 cut(s)	74, 95, 173, 542
ArsI	GACNNNNNNTTYG	2 cut(s)	738, 770
AspA2I	CCTAGG	1 cut(s)	134
AspLEI	GCGC	3 cut(s)	43, 356, 567
AspS9I	GGNCC	4 cut(s)	413, 441, 729, 746
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	4 cut(s)	178, 259, 337, 687
AsuII	TTCGAA	1 cut(s)	775
AvaII	GGWCC	3 cut(s)	441, 729, 746
AvrII	CCTAGG	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	505, 890
BbvI	GCAGC	4 cut(s)	82, 86, 160, 554
BccI	CCATC	7 cut(s)	109, 163, 391, 519, 826, 892, 898
BcgI	CGANNNNNNTGC	2 cut(s)	779, 813
BciT130I	CCWGG	1 cut(s)	594
BciVI	GTATCC	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	203, 332, 697
BfaI	CTAG	3 cut(s)	135, 306, 389
BfmI	CTRYAG	2 cut(s)	174, 264
BfoI	RGCGCY	2 cut(s)	357, 568
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	5 cut(s)	75, 96, 174, 543, 614
BlnI	CCTAGG	1 cut(s)	134
BlpI	GCTNAGC	1 cut(s)	568
BlsI	GCNGC	5 cut(s)	76, 97, 175, 544, 615
Bme1390I	CCNGG	2 cut(s)	103, 594
Bme18I	GGWCC	3 cut(s)	441, 729, 746
BmgT120I	GGNCC	4 cut(s)	413, 441, 729, 746
BmiI	GGNNCC	4 cut(s)	132, 502, 730, 747
BmrFI	CCNGG	2 cut(s)	103, 594
BmrI	ACTGGG	2 cut(s)	483, 842
BmsI	GCATC	2 cut(s)	441, 829
BmuI	ACTGGG	2 cut(s)	483, 842
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu1102I	GCTNAGC	1 cut(s)	568
Bpu14I	TTCGAA	1 cut(s)	775
BpuEI	CTTGAG	2 cut(s)	47, 906
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	134, 162, 444
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 517, 853
Bse1I	ACTGG	2 cut(s)	489, 848
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	3 cut(s)	134, 162, 444
BseGI	GGATG	3 cut(s)	55, 649, 909
BseLI	CCNNNNNNNGG	3 cut(s)	244, 517, 853
BseMII	CTCAG	2 cut(s)	582, 861
BseNI	ACTGG	2 cut(s)	489, 848
BseRI	GAGGAG	2 cut(s)	665, 887
BseXI	GCAGC	4 cut(s)	82, 86, 160, 554
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	3 cut(s)	415, 616, 721
BshNI	GGYRCC	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	102, 238
BslFI	GGGAC	5 cut(s)	236, 274, 304, 471, 759
BslI	CCNNNNNNNGG	3 cut(s)	244, 517, 853
BsmAI	GTCTC	3 cut(s)	203, 332, 697
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	5 cut(s)	236, 274, 304, 471, 759
BsmI	GAATGC	2 cut(s)	481, 802
BsnI	GGCC	3 cut(s)	415, 616, 721
Bsp119I	TTCGAA	1 cut(s)	775
Bsp1286I	GDGCHC	2 cut(s)	505, 890
Bsp143I	GATC	3 cut(s)	193, 204, 327
Bsp1720I	GCTNAGC	1 cut(s)	568
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	4 cut(s)	56, 245, 299, 613
BspANI	GGCC	3 cut(s)	415, 616, 721
BspCNI	CTCAG	2 cut(s)	581, 862
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	4 cut(s)	132, 502, 730, 747
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	322
BspT104I	TTCGAA	1 cut(s)	775
BspT107I	GGYRCC	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	489, 848
BssECI	CCNNGG	3 cut(s)	134, 162, 444
BssMI	GATC	3 cut(s)	193, 204, 327
BssT1I	CCWWGG	3 cut(s)	134, 162, 444
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	313, 343
BstBI	TTCGAA	1 cut(s)	775
BstC8I	GCNNGC	3 cut(s)	188, 318, 585
BstDEI	CTNAG	4 cut(s)	321, 568, 708, 870
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	3 cut(s)	55, 649, 909
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	2 cut(s)	357, 568
BstHHI	GCGC	3 cut(s)	43, 356, 567
BstKTI	GATC	3 cut(s)	196, 207, 330
BstMAI	GTCTC	3 cut(s)	203, 332, 697
BstMBI	GATC	3 cut(s)	193, 204, 327
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 80, 95, 137, 564
BstNI	CCWGG	1 cut(s)	594
BstSCI	CCNGG	2 cut(s)	101, 592
BstSFI	CTRYAG	2 cut(s)	174, 264
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	4 cut(s)	82, 86, 160, 554
BstXI	CCANNNNNNTGG	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	415, 616, 721
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	3 cut(s)	55, 649, 909
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	90, 318, 855
Cac8I	GCNNGC	3 cut(s)	188, 318, 585
CaiI	CAGNNNCTG	2 cut(s)	89, 341
CfoI	GCGC	3 cut(s)	43, 356, 567
Cfr13I	GGNCC	4 cut(s)	413, 441, 729, 746
CseI	GACGC	2 cut(s)	62, 87
CspCI	CAANNNNNGTGG	2 cut(s)	831, 866
CviAII	CATG	4 cut(s)	424, 445, 483, 559
DdeI	CTNAG	4 cut(s)	321, 568, 708, 870
DpnI	GATC	3 cut(s)	195, 206, 329
DpnII	GATC	3 cut(s)	193, 204, 327
Eco130I	CCWWGG	3 cut(s)	134, 162, 444
Eco24I	GRGCYC	2 cut(s)	505, 890
Eco47I	GGWCC	3 cut(s)	441, 729, 746
Eco47III	AGCGCT	2 cut(s)	355, 566
Eco57I	CTGAAG	2 cut(s)	476, 822
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	3 cut(s)	134, 162, 444
EcoT38I	GRGCYC	2 cut(s)	505, 890
ErhI	CCWWGG	3 cut(s)	134, 162, 444
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	4 cut(s)	427, 448, 486, 562
FaqI	GGGAC	5 cut(s)	236, 274, 304, 471, 759
FatI	CATG	4 cut(s)	423, 444, 482, 558
Fnu4HI	GCNGC	5 cut(s)	75, 96, 174, 543, 614
FokI	GGATG	3 cut(s)	62, 656, 916
FriOI	GRGCYC	2 cut(s)	505, 890
Fsp4HI	GCNGC	5 cut(s)	75, 96, 174, 543, 614
FspBI	CTAG	3 cut(s)	135, 306, 389
GlaI	GCGC	3 cut(s)	42, 355, 566
GluI	GCNGC	5 cut(s)	75, 96, 174, 543, 614
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	2 cut(s)	357, 568
HaeIII	GGCC	3 cut(s)	415, 616, 721
HapII	CCGG	2 cut(s)	102, 238
HgaI	GACGC	2 cut(s)	62, 87
HhaI	GCGC	3 cut(s)	43, 356, 567
Hin1II	CATG	4 cut(s)	427, 448, 486, 562
Hin6I	GCGC	3 cut(s)	41, 354, 565
HinP1I	GCGC	3 cut(s)	41, 354, 565
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	4 cut(s)	292, 382, 620, 690
HpaII	CCGG	2 cut(s)	102, 238
HphI	GGTGA	4 cut(s)	178, 259, 337, 687
Hpy188I	TCNGA	3 cut(s)	114, 702, 871
Hpy188III	TCNNGA	5 cut(s)	202, 208, 498, 895, 923
HpyAV	CCTTC	5 cut(s)	205, 251, 451, 595, 797
HpyCH4III	ACNGT	2 cut(s)	313, 343
HpyCH4IV	ACGT	1 cut(s)	861
HpyCH4V	TGCA	3 cut(s)	176, 583, 842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 80, 95, 137, 564
HpyF3I	CTNAG	4 cut(s)	321, 568, 708, 870
HpySE526I	ACGT	1 cut(s)	861
Hsp92II	CATG	4 cut(s)	427, 448, 486, 562
HspAI	GCGC	3 cut(s)	41, 354, 565
Kzo9I	GATC	3 cut(s)	193, 204, 327
LmnI	GCTCC	2 cut(s)	484, 500
Lsp1109I	GCAGC	4 cut(s)	82, 86, 160, 554
LweI	GCATC	2 cut(s)	441, 829
MaeI	CTAG	3 cut(s)	135, 306, 389
MaeII	ACGT	1 cut(s)	861
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	195, 206, 329
MboI	GATC	3 cut(s)	193, 204, 327
MboII	GAAGA	1 cut(s)	615
MhlI	GDGCHC	2 cut(s)	505, 890
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	286, 699
MmeI	TCCRAC	1 cut(s)	325
MseI	TTAA	2 cut(s)	363, 632
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	2 cut(s)	102, 238
MspR9I	CCNGG	2 cut(s)	103, 594
Mva1269I	GAATGC	2 cut(s)	481, 802
MvaI	CCWGG	1 cut(s)	594
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	5 cut(s)	17, 80, 95, 137, 564
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	3 cut(s)	193, 204, 327
NlaIII	CATG	4 cut(s)	427, 448, 486, 562
NlaIV	GGNNCC	4 cut(s)	132, 502, 730, 747
NmuCI	GTSAC	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	775
PctI	GAATGC	2 cut(s)	481, 802
PfeI	GAWTC	2 cut(s)	382, 620
PkrI	GCNGC	5 cut(s)	76, 97, 175, 544, 615
PleI	GAGTC	2 cut(s)	286, 698
PpsI	GAGTC	2 cut(s)	286, 698
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	4 cut(s)	132, 502, 730, 747
PspPI	GGNCC	4 cut(s)	413, 441, 729, 746
PstI	CTGCAG	1 cut(s)	178
PstNI	CAGNNNCTG	2 cut(s)	89, 341
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	363, 632
SatI	GCNGC	5 cut(s)	75, 96, 174, 543, 614
Sau3AI	GATC	3 cut(s)	193, 204, 327
Sau96I	GGNCC	4 cut(s)	413, 441, 729, 746
SchI	GAGTC	2 cut(s)	286, 699
ScrFI	CCNGG	2 cut(s)	103, 594
SduI	GDGCHC	2 cut(s)	505, 890
SfaNI	GCATC	2 cut(s)	441, 829
SfcI	CTRYAG	2 cut(s)	174, 264
SfuI	TTCGAA	1 cut(s)	775
SinI	GGWCC	3 cut(s)	441, 729, 746
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	26, 921
SmoI	CTYRAG	2 cut(s)	26, 921
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	4 cut(s)	56, 245, 299, 613
SspMI	CTAG	3 cut(s)	135, 306, 389
StyD4I	CCNGG	2 cut(s)	101, 592
StyI	CCWWGG	3 cut(s)	134, 162, 444
TaaI	ACNGT	2 cut(s)	313, 343
TaiI	ACGT	1 cut(s)	864
TaqI	TCGA	5 cut(s)	22, 203, 395, 775, 789
TasI	AATT	1 cut(s)	275
TauI	GCSGC	1 cut(s)	616
TfiI	GAWTC	2 cut(s)	382, 620
Tru1I	TTAA	2 cut(s)	363, 632
Tru9I	TTAA	2 cut(s)	363, 632
TscAI	CASTG	3 cut(s)	90, 318, 855
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	4 cut(s)	74, 95, 173, 542
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	3 cut(s)	90, 318, 855
VpaK11BI	GGWCC	3 cut(s)	441, 729, 746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	739
XmaJI	CCTAGG	1 cut(s)	134
XspI	CTAG	3 cut(s)	135, 306, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.