Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004260

Physical Location & Seq

Genomic Coordinates Forward (+)

33137698 .. 33138012

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG212600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCAACAGATGGAGTGCCAAATCTCATGGATATTGTTGGCCGGTCCATGGAGATGCTGAAGGGGATACCAAGCTGGAATGTTCCATGTCCCATTCAATCTGGAGCCCCATTGCATCTACCGGTGGCTCCCATAGCTATAGAAGCAATACAAGTAAGTGGCGTGAAGCGCTCAGCTTTTTCTGTGCAAGCTCGTCCAGGTAAGAAGGCTAAATTACGTACTGATTCTTCTGCGTTAATGTGCTTGGATGTGGAGGAGGGTTTTGGCATACCTAATGATAATGGGAAAGTGAAAGTCTCACCTTTGAAGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

10.98

Weight (kDa)

9.1

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004260)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007646 RLG00000008043 RLG00000008044 RLG00000019654 RLG00000023898 RLG00000033256 RLG00000033669
rosa_multiflora	Rmu_sc0001544.1_g000023 Rmu_sc0006181.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093260
rosa_samantha	Rh1BG212600 Rh2AG404300 Rh2BG397500 Rh3AG108400 Rh5AG213700 Rh5BG212800 Rh5CG236000 Rh5CG236100 Rh5DG217200 Rh5DG217300 Rh6AG116800 Rh6AG116900 Rh6AG509900 Rh6BG110900 Rh6CG108500 Rh6DG098900 Rh6DG207600 Rh6DG510800 Rh7AG206200 Rh7BG210100 Rh7CG183200 Rh7DG213400
rosa_wichuraiana	Rw5G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	220
AfeI	AGCGCT	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgeI	ACCGGT	1 cut(s)	121
AgsI	TTSAA	2 cut(s)	98, 307
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	4 cut(s)	75, 137, 176, 191
AluI	AGCT	4 cut(s)	75, 137, 176, 191
Alw26I	GTCTC	1 cut(s)	301
Aor51HI	AGCGCT	1 cut(s)	170
AoxI	GGCC	1 cut(s)	40
AsiGI	ACCGGT	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	109
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
BccI	CCATC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	60
BlpI	GCTNAGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	106, 129
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	45, 124
BpmI	CTGGAG	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	2 cut(s)	42, 121
Bse3DI	GCAATG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	42
BshTI	ACCGGT	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	43, 122
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp1720I	GCTNAGC	1 cut(s)	172
Bsp19I	CCATGG	1 cut(s)	48
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	185
BspLI	GGNNCC	2 cut(s)	106, 129
BsrDI	GCAATG	1 cut(s)	110
BsrFI	RCCGGY	2 cut(s)	42, 121
BssAI	RCCGGY	2 cut(s)	42, 121
BssECI	CCNNGG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	172, 312
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 143, 168
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	138
BstSNI	TACGTA	1 cut(s)	218
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	2 cut(s)	42, 121
Cfr13I	GGNCC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	219
CspAI	ACCGGT	1 cut(s)	121
CviAII	CATG	3 cut(s)	28, 49, 87
CviJI	RGCY	8 cut(s)	42, 75, 107, 128, 137, 176, 191, 209
CviKI_1	RGCY	8 cut(s)	42, 75, 107, 128, 137, 176, 191, 209
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	2 cut(s)	172, 312
EaeI	YGGCCR	1 cut(s)	40
Eco105I	TACGTA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	45
Eco47III	AGCGCT	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	31, 52, 90
FaiI	YATR	6 cut(s)	29, 50, 88, 134, 140, 269
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	3 cut(s)	27, 48, 86
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	109
GlaI	GCGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	43, 122
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	31, 52, 90
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	2 cut(s)	43, 122
HphI	GGTGA	1 cut(s)	291
Hpy188III	TCNNGA	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	55, 199
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	115, 187
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 143, 168
HpyF3I	CTNAG	2 cut(s)	172, 312
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	3 cut(s)	31, 52, 90
HspAI	GCGC	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	104, 133
LpnPI	CCDG	6 cut(s)	56, 61, 87, 135, 183, 210
LweI	GCATC	2 cut(s)	45, 124
MaeII	ACGT	1 cut(s)	217
MboII	GAAGA	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	1 cut(s)	212
MnlI	CCTC	2 cut(s)	247, 250
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	2 cut(s)	43, 122
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	134, 143, 168
NcoI	CCATGG	1 cut(s)	48
NlaIII	CATG	3 cut(s)	31, 52, 90
NlaIV	GGNNCC	2 cut(s)	106, 129
PfeI	GAWTC	1 cut(s)	224
PinAI	ACCGGT	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	106, 129
PspPI	GGNCC	1 cut(s)	45
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	236
Sau96I	GGNCC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	8 cut(s)	77, 139, 178, 193, 202, 220, 274, 304
SfaNI	GCATC	2 cut(s)	45, 124
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	53
SnaBI	TACGTA	1 cut(s)	218
Sse9I	AATT	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	48
TaiI	ACGT	1 cut(s)	220
TasI	AATT	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.