RLG00000033669

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004260
Physical Location & Seq
Forward (+)
30470102 .. 30470777
676 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033669

Sequence Viewer

Length: 492 bp
ATGCTAGGAGTGGGAATTGTGTTAGGTGGACTGGTGCCACAAGGGGTGGTTCGGAAAGAGCCGGCGAAAGGGGTTTTACCGGAGACCTCTAGAGGGAGCTATGGAGTTGACACAACACCAACAGCTTCAAAGTTAGGGTTGACGTCCAATGATGGTATGCCAAACCTCATGGATATTGTTGGCAGGTCTTTGGAGATGTTGAAGGAGGGTTTTGGACTACCTAATGATAATGGGATAGTGCAAATCTCCCCTTTGAAGACTAAGAGGGGAAGGCCACAAGGGGCTAAAAACAAATTGGGACTGAAGGTCCGTAGTAAGAGAGTGGCCCGGAAGATTACCAATGCCGGGATTGCTGAAGAACAAGCTGTAGCACAGGTGGATGAGATGCCTGCAATGGAAGAAGTAATTTCTGTGGGAGGTGAGGTGGTCACTAAAGAGGTCAGTGTGAGTCCTCTCCTGCAGGAACTGGCTCCAGGTTTAGCTCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.07

Weight (kDa)

8.92

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 34
AcuI CTGAAG 2 cut(s) 323, 375
AcyI GRCGYC 1 cut(s) 143
AfiI CCNNNNNNNGG 3 cut(s) 68, 93, 345
AgsI TTSAA 3 cut(s) 129, 202, 256
AhdI GACNNNNNGTC 1 cut(s) 305
AjnI CCWGG 1 cut(s) 472
AluBI AGCT 4 cut(s) 99, 125, 365, 482
AluI AGCT 4 cut(s) 99, 125, 365, 482
Alw26I GTCTC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 466
AoxI GGCC 2 cut(s) 272, 324
AspS9I GGNCC 2 cut(s) 307, 325
AsuC2I CCSGG 2 cut(s) 328, 346
AsuHPI GGTGA 1 cut(s) 431
AvaII GGWCC 1 cut(s) 307
BanI GGYRCC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 263
BccI CCATC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 474
BcnI CCSGG 2 cut(s) 328, 346
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 5, 90
BfmI CTRYAG 2 cut(s) 366, 458
BfuAI ACCTGC 1 cut(s) 174
Bme1390I CCNGG 3 cut(s) 328, 346, 474
Bme18I GGWCC 1 cut(s) 307
BmeRI GACNNNNNGTC 1 cut(s) 305
BmgT120I GGNCC 2 cut(s) 307, 325
BmiI GGNNCC 2 cut(s) 36, 471
BmrFI CCNGG 3 cut(s) 328, 346, 474
BmsI GCATC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 468
BpuMI CCSGG 2 cut(s) 328, 346
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 93, 345
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 36, 471
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 474
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 68, 93, 345
BseMI GCAATG 1 cut(s) 399
BseNI ACTGG 2 cut(s) 36, 471
BshFI GGCC 2 cut(s) 274, 326
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 4 cut(s) 62, 80, 328, 345
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 68, 93, 345
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 2 cut(s) 274, 326
Bso31I GGTCTC 1 cut(s) 77
BspANI GGCC 2 cut(s) 274, 326
BspLI GGNNCC 2 cut(s) 36, 471
BspMAI CTGCAG 1 cut(s) 462
BspMI ACCTGC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 2 cut(s) 36, 471
BssAI RCCGGY 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 474
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 63, 390
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 385
BstMAI GTCTC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 350
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 3 cut(s) 326, 344, 472
BstSFI CTRYAG 2 cut(s) 366, 458
BstV2I GAAGAC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 274, 326
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 448
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 63, 390
CaiI CAGNNNCTG 1 cut(s) 466
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 307, 325
CviAII CATG 1 cut(s) 169
CviJI RGCY 9 cut(s) 61, 99, 125, 274, 284, 326, 365, 470, 482
CviKI_1 RGCY 9 cut(s) 61, 99, 125, 274, 284, 326, 365, 470, 482
DdeI CTNAG 1 cut(s) 261
DriI GACNNNNNGTC 1 cut(s) 305
Eam1105I GACNNNNNGTC 1 cut(s) 305
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 323, 375
EcoRII CCWGG 1 cut(s) 472
FaeI CATG 1 cut(s) 172
FaiI YATR 3 cut(s) 102, 158, 170
FaqI GGGAC 1 cut(s) 312
FatI CATG 1 cut(s) 168
FokI GGATG 1 cut(s) 392
FspBI CTAG 2 cut(s) 5, 90
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 2 cut(s) 274, 326
HapII CCGG 4 cut(s) 62, 80, 328, 345
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 1 cut(s) 172
HincII GTYRAC 2 cut(s) 109, 141
HindII GTYRAC 2 cut(s) 109, 141
HinfI GANTC 1 cut(s) 448
HpaII CCGG 4 cut(s) 62, 80, 328, 345
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 3 cut(s) 29, 109, 141
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 90, 485
Hpy8I GTNNAC 3 cut(s) 29, 109, 141
HpyAV CCTTC 3 cut(s) 196, 264, 298
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 241, 392, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 350
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 143
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 1 cut(s) 172
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 96, 475
LweI GCATC 1 cut(s) 375
MaeI CTAG 2 cut(s) 5, 90
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 427
MboII GAAGA 4 cut(s) 268, 343, 368, 410
MluCI AATT 3 cut(s) 15, 293, 405
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 9 cut(s) 86, 97, 176, 199, 258, 410, 415, 430, 462
MroNI GCCGGC 1 cut(s) 61
MspI CCGG 4 cut(s) 62, 80, 328, 345
MspR9I CCNGG 3 cut(s) 328, 346, 474
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 350
NaeI GCCGGC 1 cut(s) 63
NciI CCSGG 2 cut(s) 328, 346
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 36, 471
NmuCI GTSAC 1 cut(s) 427
PdiI GCCGGC 1 cut(s) 63
PleI GAGTC 1 cut(s) 456
PpsI GAGTC 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 2 cut(s) 36, 471
PspPI GGNCC 2 cut(s) 307, 325
PstI CTGCAG 1 cut(s) 462
PstNI CAGNNNCTG 1 cut(s) 466
Sau96I GGNCC 2 cut(s) 307, 325
SbfI CCTGCAGG 1 cut(s) 462
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 3 cut(s) 328, 346, 474
SdaI CCTGCAGG 1 cut(s) 462
SfaNI GCATC 1 cut(s) 375
SfcI CTRYAG 2 cut(s) 366, 458
SinI GGWCC 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
Sse8387I CCTGCAGG 1 cut(s) 462
Sse9I AATT 3 cut(s) 15, 293, 405
SspMI CTAG 2 cut(s) 5, 90
StyD4I CCNGG 3 cut(s) 326, 344, 472
TaiI ACGT 1 cut(s) 146
TasI AATT 3 cut(s) 15, 293, 405
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 307
XbaI TCTAGA 1 cut(s) 89
XspI CTAG 2 cut(s) 5, 90
ZraI GACGTC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.