Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004260

Physical Location & Seq

Genomic Coordinates Forward (+)

24857287 .. 24858054

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCAGAGGCTATGGCGGCGGCACTTGCGTTGAAGGATTACGCGGTGGTGGAGTTTGGGGAAGCTGGAACAGCGGCTGTTGCTGCGTCCGGTTTTTATCTGGTGGGTCGTATGTTGGCACCTAGGGCAGAGGATAATGCTGGTTTGCCCAAGGCGATGGCGGCGGTATGGGGCCTACGTGATCGTCTCTCAATCACGAAGGTTGAGAGGGACTGGTTTCAGTTCCGGTTTGCAGTGAAGGAGGAAGGAACTACAGAGCTCGAATTAGGAGGTCAGAAGACTCCGGCGGTGGCTAGAAAAGCGCCGGTGTTAATGCTCAAAGTCCGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.9

Weight (kDa)

9.45

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004260)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007646 RLG00000008043 RLG00000008044 RLG00000019654 RLG00000023898 RLG00000033256 RLG00000033669
rosa_multiflora	Rmu_sc0001544.1_g000023 Rmu_sc0006181.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093260
rosa_samantha	Rh1BG212600 Rh2AG404300 Rh2BG397500 Rh3AG108400 Rh5AG213700 Rh5BG212800 Rh5CG236000 Rh5CG236100 Rh5DG217200 Rh5DG217300 Rh6AG116800 Rh6AG116900 Rh6AG509900 Rh6BG110900 Rh6CG108500 Rh6DG098900 Rh6DG207600 Rh6DG510800 Rh7AG206200 Rh7BG210100 Rh7CG183200 Rh7DG213400
rosa_wichuraiana	Rw5G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AccII	CGCG	1 cut(s)	44
AciI	CCGC	8 cut(s)	17, 20, 44, 74, 161, 164, 287, 328
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	2 cut(s)	65, 259
AluI	AGCT	2 cut(s)	65, 259
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	83
AspA2I	CCTAGG	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	172
AvrII	CCTAGG	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	123, 294
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	305
BisI	GCNGC	5 cut(s)	18, 21, 75, 84, 162
BlnI	CCTAGG	1 cut(s)	122
BlsI	GCNGC	5 cut(s)	19, 22, 76, 85, 163
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	120, 173
BpiI	GAAGAC	1 cut(s)	284
BsaAI	YACGTR	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	122, 150
BsaWI	WCCGGW	2 cut(s)	89, 225
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	122, 150
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	5 cut(s)	90, 226, 284, 305, 325
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	8 cut(s)	17, 20, 44, 74, 161, 164, 287, 328
BspANI	GGCC	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	120, 173
BspT107I	GGYRCC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	122, 150
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	2 cut(s)	122, 150
BstBAI	YACGTR	1 cut(s)	179
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	8 cut(s)	17, 26, 71, 80, 83, 125, 161, 299
BstSFI	CTRYAG	1 cut(s)	252
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	284
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	170
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	75
CviJI	RGCY	6 cut(s)	11, 65, 77, 174, 259, 293
CviKI_1	RGCY	6 cut(s)	11, 65, 77, 174, 259, 293
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	122, 150
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	122, 150
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	122, 150
Esp3I	CGTCTC	1 cut(s)	191
FaiI	YATR	3 cut(s)	14, 113, 169
FaqI	GGGAC	1 cut(s)	224
Fnu4HI	GCNGC	5 cut(s)	18, 21, 75, 84, 162
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	5 cut(s)	18, 21, 75, 84, 162
FspBI	CTAG	2 cut(s)	123, 294
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	5 cut(s)	18, 21, 75, 84, 162
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	5 cut(s)	90, 226, 284, 305, 325
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	5 cut(s)	90, 226, 284, 305, 325
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	4 cut(s)	28, 193, 232, 239
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	8 cut(s)	17, 26, 71, 80, 83, 125, 161, 299
HpySE526I	ACGT	1 cut(s)	178
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	8 cut(s)	51, 86, 103, 126, 199, 239, 297, 318
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	123, 294
MaeII	ACGT	1 cut(s)	178
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	4 cut(s)	124, 201, 235, 263
MseI	TTAA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	5 cut(s)	90, 226, 284, 305, 325
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	8 cut(s)	17, 26, 71, 80, 83, 125, 161, 299
NdeII	GATC	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	120, 173
PkrI	GCNGC	5 cut(s)	19, 22, 76, 85, 163
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Ppu21I	YACGTR	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	120, 173
PspPI	GGNCC	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	5 cut(s)	18, 21, 75, 84, 162
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	6 cut(s)	67, 124, 181, 204, 261, 274
SfcI	CTRYAG	1 cut(s)	252
SgrAI	CRCCGGYG	1 cut(s)	304
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	8 cut(s)	17, 20, 44, 74, 161, 164, 287, 328
SspMI	CTAG	2 cut(s)	123, 294
SstI	GAGCTC	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	122, 150
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	261
TasI	AATT	1 cut(s)	263
TauI	GCSGC	4 cut(s)	20, 23, 77, 164
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	1 cut(s)	83
TspRI	CASTG	1 cut(s)	240
XmaJI	CCTAGG	1 cut(s)	122
XspI	CTAG	2 cut(s)	123, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.