Rroxscaffold_2G00093260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004260
Physical Location & Seq
Forward (+)
14665838 .. 14667726
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093260.1

Sequence Viewer

Length: 579 bp
ATGGTCATCACATTTGTGATCAAATTCTGGTGGAGGTGTGATGGCAGGGGTGGCAAGAAAGGTGATGGGGGTTCAGCAGCCCAGGGGGTGGGCAGGATCGAGCTGGGAAAGGTGGTGATGTCATTGACAATCCCTAGAGGAAGTGCTGCTGCTACTGCAACGCTGACATCACCTGTGCTAGGGATGACGTCAGCGGAATGGATGCCAAGTTTGGCTGAATTTGTTGGCTATTCATTGGAATTGTTGAAAGGTTGGAATGCTCCTTCTCCTACACAATCTAGGGCTCCGATGGGCTTGACGTTGGCAACTATGGCTACGCAAGTGGCACAAGCGAGTGGGGCTAAGCGTTCATCTACTGTGGTGCAAACTCGCCTAGGTAAGAAGGTAAAATTGCGTGCTGATTCTTCTGCCTTGATGTGTTTGGATGTGGAAGAGGGTTTTGGGTTACTCAATGACAATGGGATAGTGAAGATATCCCCTATAAAGACCAAGAGGGGTAGGCCCAAAGGGTCCAAAAACAAGTTGGGACCAAAAGTTCGTAGTAAGAGAGTGGCTCGGATGATGGTTATAAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

20.36

Weight (kDa)

10.76

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AatII GACGTC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 88
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 2 cut(s) 23, 218
AcyI GRCGYC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 88, 179
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AleI CACNNNNGTG 1 cut(s) 14
AloI GAACNNNNNNTCC 2 cut(s) 519, 551
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AlwI GGATC 1 cut(s) 104
AoxI GGCC 1 cut(s) 500
ApeKI GCWGC 3 cut(s) 77, 146, 149
ApoI RAATTY 2 cut(s) 23, 218
ArsI GACNNNNNNTTYG 2 cut(s) 519, 551
AspA2I CCTAGG 1 cut(s) 373
AspS9I GGNCC 3 cut(s) 501, 510, 527
AsuHPI GGTGA 3 cut(s) 74, 127, 162
AvaII GGWCC 2 cut(s) 510, 527
AvrII CCTAGG 1 cut(s) 373
BanII GRGCYC 1 cut(s) 286
BbvI GCAGC 3 cut(s) 89, 133, 136
BccI CCATC 4 cut(s) 35, 59, 283, 556
BciT130I CCWGG 1 cut(s) 83
BclI TGATCA 1 cut(s) 18
BfaI CTAG 4 cut(s) 135, 179, 279, 374
BisI GCNGC 3 cut(s) 78, 147, 150
BlnI CCTAGG 1 cut(s) 373
BlpI GCTNAGC 1 cut(s) 342
BlsI GCNGC 3 cut(s) 79, 148, 151
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 2 cut(s) 510, 527
BmgT120I GGNCC 3 cut(s) 501, 510, 527
BmiI GGNNCC 3 cut(s) 285, 511, 528
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 538, 570
Bpu1102I GCTNAGC 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 3 cut(s) 81, 82, 373
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 179
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 3 cut(s) 81, 82, 373
BseGI GGATG 4 cut(s) 189, 207, 430, 564
BseLI CCNNNNNNNGG 2 cut(s) 88, 179
BseXI GCAGC 3 cut(s) 89, 133, 136
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 502
BslFI GGGAC 1 cut(s) 540
BslI CCNNNNNNNGG 2 cut(s) 88, 179
BsmFI GGGAC 1 cut(s) 540
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 18, 96
Bsp1720I GCTNAGC 1 cut(s) 342
BspACI CCGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 502
BspLI GGNNCC 3 cut(s) 285, 511, 528
BspPI GGATC 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 81, 82, 373
BssMI GATC 2 cut(s) 18, 96
BssNI GRCGYC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 342
BstENI CCTNNNNNAGG 1 cut(s) 177
BstF5I GGATG 4 cut(s) 189, 207, 430, 564
BstKTI GATC 2 cut(s) 21, 99
BstMBI GATC 2 cut(s) 18, 96
BstMWI GCNNNNNNNGC 4 cut(s) 51, 155, 311, 338
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 3 cut(s) 89, 133, 136
BsuRI GGCC 1 cut(s) 502
BtsCI GGATG 4 cut(s) 189, 207, 430, 564
Cac8I GCNNGC 1 cut(s) 396
Cfr13I GGNCC 3 cut(s) 501, 510, 527
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 20, 98
DpnII GATC 2 cut(s) 18, 96
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 286
Eco32I GATATC 1 cut(s) 474
Eco47I GGWCC 2 cut(s) 510, 527
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 81
EcoRV GATATC 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 373
FaiI YATR 3 cut(s) 311, 482, 569
FaqI GGGAC 1 cut(s) 540
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 3 cut(s) 78, 147, 150
FokI GGATG 4 cut(s) 196, 214, 437, 571
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 78, 147, 150
FspBI CTAG 4 cut(s) 135, 179, 279, 374
GluI GCNGC 3 cut(s) 78, 147, 150
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 502
Hin1I GRCGYC 1 cut(s) 188
HinfI GANTC 1 cut(s) 401
HphI GGTGA 3 cut(s) 74, 127, 162
Hpy188I TCNGA 2 cut(s) 288, 558
HpyAV CCTTC 2 cut(s) 273, 376
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 2 cut(s) 188, 299
HpyCH4V TGCA 2 cut(s) 158, 364
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 155, 311, 338
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 2 cut(s) 188, 299
Hsp92I GRCGYC 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 2 cut(s) 18, 96
LmnI GCTCC 2 cut(s) 265, 289
LpnPI CCDG 7 cut(s) 13, 31, 68, 79, 89, 95, 186
Lsp1109I GCAGC 3 cut(s) 89, 133, 136
LweI GCATC 1 cut(s) 192
MaeI CTAG 4 cut(s) 135, 179, 279, 374
MaeII ACGT 2 cut(s) 188, 299
MaeIII GTNAC 1 cut(s) 444
MalI GATC 2 cut(s) 20, 98
MboI GATC 2 cut(s) 18, 96
MboII GAAGA 3 cut(s) 396, 443, 481
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 4 cut(s) 23, 218, 239, 389
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 4 cut(s) 27, 131, 427, 486
MseI TTAA 1 cut(s) 577
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 51, 155, 311, 338
NdeII GATC 2 cut(s) 18, 96
NlaIV GGNNCC 3 cut(s) 285, 511, 528
OliI CACNNNNGTG 1 cut(s) 14
PasI CCCWGGG 1 cut(s) 82
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 401
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 3 cut(s) 79, 148, 151
PsiI TTATAA 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 3 cut(s) 285, 511, 528
PspPI GGNCC 3 cut(s) 501, 510, 527
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 1 cut(s) 577
SatI GCNGC 3 cut(s) 78, 147, 150
Sau3AI GATC 2 cut(s) 18, 96
Sau96I GGNCC 3 cut(s) 501, 510, 527
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 286
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 2 cut(s) 510, 527
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 4 cut(s) 23, 218, 239, 389
SsiI CCGC 1 cut(s) 194
SspMI CTAG 4 cut(s) 135, 179, 279, 374
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 2 cut(s) 191, 302
TaqI TCGA 1 cut(s) 99
TasI AATT 4 cut(s) 23, 218, 239, 389
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 1 cut(s) 577
Tru9I TTAA 1 cut(s) 577
TseI GCWGC 3 cut(s) 77, 146, 149
TspDTI ATGAA 2 cut(s) 222, 339
Van91I CCANNNNNTGG 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 510, 527
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 2 cut(s) 23, 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XmaJI CCTAGG 1 cut(s) 373
XspI CTAG 4 cut(s) 135, 179, 279, 374
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.