Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006181.1

Orthogroup ID

OG0004260

Physical Location & Seq

Genomic Coordinates Forward (+)

40113 .. 41504

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006181.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atggccgcggctatggcggctcgactggcggcagcacttgcgctgacgaacgaagcggtggttgagtttggggaggctggagcagcggctgttgcagcgtcgggtttttatttggttgggcatatgttggcgcctagggtggaggatgatgcaggattgcctaaagtgatggcggcggtgtggggcctgcgtgatctcctctcgatcatgaaggttgatggtgaccagttccaattctggttttcggtgaaagaggtgggtcaaagtgttcttcatggtggcctgtggaatttcaagaacagtatgcttctgttggaggagtatgacgaactcggtgagccggagatggttccattgaactcactggaggagtgggtcactatgcagcgtctgccaccacgtctgccgactgacgaatctctgatgctgattagttcatcgatgggtaggttcctgagggcagagaagttttctttgcagcggggagcgccagagcaacgattccaggtccttctggatgttcgtcgacatctgtgggtgaagtggacctatagttttacggagacagccaaggcggaggtggagctgcattatgaaaaggatggtgctccatttccgctggttcccatggccttacaggcgggacatgtgagtggggttaagcgttcaccatctgggatgcaagttcgtccaggtaagaaggctaaattgcgtgctgattcctccgcccttgtgtgcatggatgtggaagaggaacaggctgtagcacaggtggttgagctacctgcaatggaagaagcaatttctgtgggaggtgaggtggtcattgaggaggtcagtgtgagtcctctcctgcaggaaatggctccgggtttagctcaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283

Protein Analysis

295

Amino Acids

32.29

Weight (kDa)

4.86

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004260)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007646 RLG00000008043 RLG00000008044 RLG00000019654 RLG00000023898 RLG00000033256 RLG00000033669
rosa_multiflora	Rmu_sc0001544.1_g000023 Rmu_sc0006181.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093260
rosa_samantha	Rh1BG212600 Rh2AG404300 Rh2BG397500 Rh3AG108400 Rh5AG213700 Rh5BG212800 Rh5CG236000 Rh5CG236100 Rh5DG217200 Rh5DG217300 Rh6AG116800 Rh6AG116900 Rh6AG509900 Rh6BG110900 Rh6CG108500 Rh6DG098900 Rh6DG207600 Rh6DG510800 Rh7AG206200 Rh7BG210100 Rh7CG183200 Rh7DG213400
rosa_wichuraiana	Rw5G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	793
AccB1I	GGYRCC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	526
AccII	CGCG	1 cut(s)	8
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	289
AcyI	GRCGYC	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	646
AgsI	TTSAA	2 cut(s)	295, 358
AjiI	CACGTC	1 cut(s)	401
AjnI	CCWGG	2 cut(s)	504, 691
AluBI	AGCT	3 cut(s)	586, 781, 878
AluI	AGCT	3 cut(s)	586, 781, 878
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	1 cut(s)	557
AlwNI	CAGNNNCTG	2 cut(s)	89, 391
AoxI	GGCC	4 cut(s)	3, 184, 280, 630
ApeKI	GCWGC	6 cut(s)	32, 83, 95, 385, 478, 586
ApoI	RAATTY	1 cut(s)	289
AspA2I	CCTAGG	1 cut(s)	134
AspLEI	GCGC	3 cut(s)	43, 133, 490
AspS9I	GGNCC	3 cut(s)	184, 508, 546
AsuC2I	CCSGG	1 cut(s)	870
AsuHPI	GGTGA	6 cut(s)	233, 259, 347, 550, 660, 827
AvaII	GGWCC	2 cut(s)	508, 546
AvrII	CCTAGG	1 cut(s)	134
AxyI	CCTNAGG	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	6 cut(s)	44, 95, 107, 397, 490, 573
BccI	CCATC	6 cut(s)	163, 212, 340, 436, 596, 679
BciT130I	CCWGG	2 cut(s)	506, 693
BcnI	CCSGG	1 cut(s)	870
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	3 cut(s)	550, 762, 854
BfoI	RGCGCY	2 cut(s)	134, 491
BfuAI	ACCTGC	1 cut(s)	793
BglI	GCCNNNNNGGC	1 cut(s)	638
BlnI	CCTAGG	1 cut(s)	134
Bme1390I	CCNGG	3 cut(s)	506, 693, 870
Bme18I	GGWCC	2 cut(s)	508, 546
BmgBI	CACGTC	1 cut(s)	401
BmgT120I	GGNCC	3 cut(s)	184, 508, 546
BmiI	GGNNCC	6 cut(s)	132, 185, 351, 452, 624, 867
BmrFI	CCNGG	3 cut(s)	506, 693, 870
BmsI	GCATC	3 cut(s)	139, 414, 669
BpmI	CTGGAG	2 cut(s)	99, 386
BpuEI	CTTGAG	1 cut(s)	864
BpuMI	CCSGG	1 cut(s)	870
Bsa29I	ATCGAT	1 cut(s)	440
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	4 cut(s)	6, 134, 570, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	804, 834
Bse1I	ACTGG	3 cut(s)	30, 226, 369
Bse21I	CCTNAGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	795
BseBI	CCWGG	2 cut(s)	506, 693
BseCI	ATCGAT	1 cut(s)	440
BseDI	CCNNGG	4 cut(s)	6, 134, 570, 627
BseGI	GGATG	5 cut(s)	151, 523, 607, 684, 748
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	3 cut(s)	30, 226, 369
BseRI	GAGGAG	4 cut(s)	188, 332, 383, 845
BseXI	GCAGC	6 cut(s)	44, 95, 107, 397, 490, 573
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	4 cut(s)	5, 186, 282, 632
BshNI	GGYRCC	1 cut(s)	130
BshVI	ATCGAT	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	610
BsiSI	CCGG	2 cut(s)	341, 869
BslFI	GGGAC	1 cut(s)	657
BsmAI	GTCTC	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	657
BsnI	GGCC	4 cut(s)	5, 186, 282, 632
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	2 cut(s)	193, 204
Bsp19I	CCATGG	1 cut(s)	627
BspANI	GGCC	4 cut(s)	5, 186, 282, 632
BspCNI	CTCAG	1 cut(s)	447
BspDI	ATCGAT	1 cut(s)	440
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	6 cut(s)	132, 185, 351, 452, 624, 867
BspMAI	CTGCAG	1 cut(s)	858
BspMI	ACCTGC	1 cut(s)	793
BspT107I	GGYRCC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	795
BsrI	ACTGG	3 cut(s)	30, 226, 369
BssECI	CCNNGG	4 cut(s)	6, 134, 570, 627
BssMI	GATC	2 cut(s)	193, 204
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	3 cut(s)	134, 570, 627
Bst2UI	CCWGG	2 cut(s)	506, 693
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	744
BstACI	GRCGYC	1 cut(s)	131
BstAPI	GCANNNNNTGC	2 cut(s)	38, 391
BstC8I	GCNNGC	2 cut(s)	188, 714
BstDEI	CTNAG	1 cut(s)	455
BstDSI	CCRYGG	2 cut(s)	6, 627
BstEII	GGTNACC	1 cut(s)	221
BstF5I	GGATG	5 cut(s)	151, 523, 607, 684, 748
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	2 cut(s)	134, 491
BstHHI	GCGC	3 cut(s)	43, 133, 490
BstKTI	GATC	2 cut(s)	196, 207
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	2 cut(s)	193, 204
BstNI	CCWGG	2 cut(s)	506, 693
BstNSI	RCATGY	1 cut(s)	650
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	3 cut(s)	504, 691, 868
BstSFI	CTRYAG	3 cut(s)	550, 762, 854
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	6 cut(s)	44, 95, 107, 397, 490, 573
Bsu15I	ATCGAT	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	455
BsuRI	GGCC	4 cut(s)	5, 186, 282, 632
BsuTUI	ATCGAT	1 cut(s)	440
BtgI	CCRYGG	2 cut(s)	6, 627
BtrI	CACGTC	1 cut(s)	401
BtsCI	GGATG	5 cut(s)	151, 523, 607, 684, 748
BtsIMutI	CAGTG	2 cut(s)	362, 844
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	2 cut(s)	188, 714
CaiI	CAGNNNCTG	2 cut(s)	89, 391
CciI	TCATGA	1 cut(s)	207
CfoI	GCGC	3 cut(s)	43, 133, 490
Cfr13I	GGNCC	3 cut(s)	184, 508, 546
Cfr42I	CCGCGG	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	440
CseI	GACGC	2 cut(s)	87, 377
CspCI	CAANNNNNGTGG	2 cut(s)	789, 824
CviAII	CATG	5 cut(s)	208, 275, 628, 647, 739
DdeI	CTNAG	1 cut(s)	455
DinI	GGCGCC	1 cut(s)	132
DpnI	GATC	2 cut(s)	195, 206
DpnII	GATC	2 cut(s)	193, 204
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
EciI	GGCGGA	2 cut(s)	590, 715
Eco130I	CCWWGG	3 cut(s)	134, 570, 627
Eco47I	GGWCC	2 cut(s)	508, 546
Eco81I	CCTNAGG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	221
EcoO109I	RGGNCCY	2 cut(s)	184, 508
EcoO65I	GGTNACC	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	504, 691
EcoT14I	CCWWGG	3 cut(s)	134, 570, 627
EgeI	GGCGCC	1 cut(s)	132
EheI	GGCGCC	1 cut(s)	132
ErhI	CCWWGG	3 cut(s)	134, 570, 627
FaeI	CATG	5 cut(s)	211, 278, 631, 650, 742
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	5 cut(s)	207, 274, 627, 646, 738
FauI	CCCGC	2 cut(s)	474, 634
FauNDI	CATATG	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	526
FokI	GGATG	5 cut(s)	158, 530, 614, 691, 755
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	3 cut(s)	42, 132, 489
GsuI	CTGGAG	2 cut(s)	99, 386
HaeII	RGCGCY	2 cut(s)	134, 491
HaeIII	GGCC	4 cut(s)	5, 186, 282, 632
HapII	CCGG	2 cut(s)	341, 869
HgaI	GACGC	2 cut(s)	87, 377
HhaI	GCGC	3 cut(s)	43, 133, 490
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	5 cut(s)	211, 278, 631, 650, 742
Hin6I	GCGC	3 cut(s)	41, 131, 488
HinP1I	GCGC	3 cut(s)	41, 131, 488
HincII	GTYRAC	1 cut(s)	527
HindII	GTYRAC	1 cut(s)	527
HinfI	GANTC	4 cut(s)	416, 501, 719, 844
HpaII	CCGG	2 cut(s)	341, 869
HphI	GGTGA	6 cut(s)	233, 259, 347, 550, 660, 827
Hpy166II	GTNNAC	3 cut(s)	527, 546, 668
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	6 cut(s)	202, 208, 295, 454, 515, 881
Hpy8I	GTNNAC	3 cut(s)	527, 546, 668
Hpy99I	CGWCG	2 cut(s)	103, 528
HpyAV	CCTTC	3 cut(s)	205, 521, 694
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	9 cut(s)	95, 152, 385, 478, 589, 682, 738, 788, 856
HpyF3I	CTNAG	1 cut(s)	455
HpySE526I	ACGT	1 cut(s)	400
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	5 cut(s)	211, 278, 631, 650, 742
HspAI	GCGC	3 cut(s)	41, 131, 488
KasI	GGCGCC	1 cut(s)	130
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	193, 204
LmnI	GCTCC	5 cut(s)	80, 485, 583, 613, 871
Lsp1109I	GCAGC	6 cut(s)	44, 95, 107, 397, 490, 573
LweI	GCATC	3 cut(s)	139, 414, 669
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	2 cut(s)	221, 376
MalI	GATC	2 cut(s)	195, 206
MboI	GATC	2 cut(s)	193, 204
MboII	GAAGA	3 cut(s)	263, 761, 806
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	4 cut(s)	233, 289, 707, 801
Mly113I	GGCGCC	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	853
MmeI	TCCRAC	1 cut(s)	294
MseI	TTAA	1 cut(s)	660
MslI	CAYNNNNRTG	2 cut(s)	651, 743
MspA1I	CMGCKG	4 cut(s)	8, 86, 481, 619
MspI	CCGG	2 cut(s)	341, 869
MspR9I	CCNGG	3 cut(s)	506, 693, 870
MvaI	CCWGG	2 cut(s)	506, 693
MvnI	CGCG	1 cut(s)	8
NarI	GGCGCC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	870
NcoI	CCATGG	1 cut(s)	627
NdeI	CATATG	1 cut(s)	123
NdeII	GATC	2 cut(s)	193, 204
NlaIII	CATG	5 cut(s)	211, 278, 631, 650, 742
NlaIV	GGNNCC	6 cut(s)	132, 185, 351, 452, 624, 867
NmuCI	GTSAC	2 cut(s)	221, 376
NspI	RCATGY	1 cut(s)	650
PagI	TCATGA	1 cut(s)	207
PciI	ACATGT	1 cut(s)	646
PfeI	GAWTC	3 cut(s)	416, 501, 719
PleI	GAGTC	1 cut(s)	852
PluTI	GGCGCC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	852
PpuMI	RGGWCCY	1 cut(s)	508
PscI	ACATGT	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	508
Psp6I	CCWGG	2 cut(s)	504, 691
PspEI	GGTNACC	1 cut(s)	221
PspGI	CCWGG	2 cut(s)	504, 691
PspN4I	GGNNCC	6 cut(s)	132, 185, 351, 452, 624, 867
PspPI	GGNCC	3 cut(s)	184, 508, 546
PspPPI	RGGWCCY	1 cut(s)	508
PstI	CTGCAG	1 cut(s)	858
PstNI	CAGNNNCTG	2 cut(s)	89, 391
RseI	CAYNNNNRTG	2 cut(s)	651, 743
SacII	CCGCGG	1 cut(s)	9
SalI	GTCGAC	1 cut(s)	525
SaqAI	TTAA	1 cut(s)	660
Sau3AI	GATC	2 cut(s)	193, 204
Sau96I	GGNCC	3 cut(s)	184, 508, 546
SbfI	CCTGCAGG	1 cut(s)	858
SchI	GAGTC	1 cut(s)	853
ScrFI	CCNGG	3 cut(s)	506, 693, 870
SdaI	CCTGCAGG	1 cut(s)	858
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	3 cut(s)	139, 414, 669
SfcI	CTRYAG	3 cut(s)	550, 762, 854
SfoI	GGCGCC	1 cut(s)	132
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
SinI	GGWCC	2 cut(s)	508, 546
SmiMI	CAYNNNNRTG	2 cut(s)	651, 743
SmlI	CTYRAG	1 cut(s)	879
SmoI	CTYRAG	1 cut(s)	879
Sse8387I	CCTGCAGG	1 cut(s)	858
Sse9I	AATT	4 cut(s)	233, 289, 707, 801
SspDI	GGCGCC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	504, 691, 868
StyI	CCWWGG	3 cut(s)	134, 570, 627
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	4 cut(s)	22, 203, 440, 526
TasI	AATT	4 cut(s)	233, 289, 707, 801
TauI	GCSGC	6 cut(s)	8, 11, 20, 32, 89, 176
TfiI	GAWTC	3 cut(s)	416, 501, 719
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TscAI	CASTG	2 cut(s)	369, 844
TseFI	GTSAC	2 cut(s)	221, 376
TseI	GCWGC	6 cut(s)	32, 83, 95, 385, 478, 586
Tsp45I	GTSAC	2 cut(s)	221, 376
TspDTI	ATGAA	4 cut(s)	224, 263, 426, 609
TspGWI	ACGGA	1 cut(s)	575
TspRI	CASTG	2 cut(s)	369, 844
VpaK11BI	GGWCC	2 cut(s)	508, 546
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmaJI	CCTAGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	526
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.