Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004260

Physical Location & Seq

Genomic Coordinates Forward (+)

20576074 .. 20577168

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG213400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACAGGAACTACAGGGCTGGTATTGGGGGGTCAGGTGACTCCGACAGTGACTAGGAAAGAGCCGTCTAAGGTGATCCTGTCAGAGACTCCTAGGTGCAGTGCTGGTGTTACGGTGACACCTACATCTACACCAATTATGTTAGGGCAGATGACAACAGATGGAGGGCCAAATCTCGTGGATATTGTTGGCCGATCTATGGAGATGCTGAAGGGGATACCAAGCTGGAATGCTCCATGTCCCATTCAATCTGGAGCCGCACTGACTATACCGGTGGTTCCCAAAGCTATAGAAGCATCACAAGTACGTGGTGTGAAGCGCTTAGCTTTTTCTGTGCAAGCTCGTCCAGTCAATAGCTTTCAAAGTAGTGAAGAGATTGATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.39

Weight (kDa)

8.77

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004260)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007646 RLG00000008043 RLG00000008044 RLG00000019654 RLG00000023898 RLG00000033256 RLG00000033669
rosa_multiflora	Rmu_sc0001544.1_g000023 Rmu_sc0006181.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093260
rosa_samantha	Rh1BG212600 Rh2AG404300 Rh2BG397500 Rh3AG108400 Rh5AG213700 Rh5BG212800 Rh5CG236000 Rh5CG236100 Rh5DG217200 Rh5DG217300 Rh6AG116800 Rh6AG116900 Rh6AG509900 Rh6BG110900 Rh6CG108500 Rh6DG098900 Rh6DG207600 Rh6DG510800 Rh7AG206200 Rh7BG210100 Rh7CG183200 Rh7DG213400
rosa_wichuraiana	Rw5G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	306
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgeI	ACCGGT	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	248, 362
AluBI	AGCT	5 cut(s)	225, 287, 326, 341, 357
AluI	AGCT	5 cut(s)	225, 287, 326, 341, 357
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	70
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	2 cut(s)	167, 190
AsiGI	ACCGGT	1 cut(s)	271
AspA2I	CCTAGG	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	49, 85, 127
AvrII	CCTAGG	1 cut(s)	92
BauI	CACGAG	1 cut(s)	176
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	49
BciVI	GTATCC	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	54, 93
BfmI	CTRYAG	2 cut(s)	12, 288
BfoI	RGCGCY	1 cut(s)	322
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	1 cut(s)	258
BlnI	CCTAGG	1 cut(s)	92
BlpI	GCTNAGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	256, 279
BmsI	GCATC	2 cut(s)	195, 305
BpmI	CTGGAG	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	322
BsaAI	YACGTR	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	169, 192
BshTI	ACCGGT	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	169, 192
Bsp143I	GATC	2 cut(s)	75, 194
Bsp1720I	GCTNAGC	1 cut(s)	322
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	2 cut(s)	169, 192
BspLI	GGNNCC	2 cut(s)	256, 279
BspPI	GGATC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	75, 194
BssSI	CACGAG	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	49, 115
Bst6I	CTCTTC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	69, 322
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	2 cut(s)	78, 197
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	2 cut(s)	75, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSFI	CTRYAG	2 cut(s)	12, 288
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	169, 192
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	3 cut(s)	54, 106, 260
Cac8I	GCNNGC	1 cut(s)	339
CfoI	GCGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	305
CspAI	ACCGGT	1 cut(s)	271
CspCI	CAANNNNNGTGG	2 cut(s)	159, 194
CviAII	CATG	1 cut(s)	237
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	69, 322
DpnI	GATC	2 cut(s)	77, 196
DpnII	GATC	2 cut(s)	75, 194
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	92
Eco47III	AGCGCT	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	1 cut(s)	240
FaiI	YATR	5 cut(s)	140, 200, 238, 269, 290
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	236
Fnu4HI	GCNGC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	54, 93
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	169, 192
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	40, 88
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	3 cut(s)	49, 85, 127
Hpy188I	TCNGA	2 cut(s)	45, 85
Hpy188III	TCNNGA	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	49, 115
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	2 cut(s)	99, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	69, 322
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	1 cut(s)	240
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	75, 194
LmnI	GCTCC	2 cut(s)	238, 254
LpnPI	CCDG	8 cut(s)	5, 20, 90, 92, 211, 237, 285, 360
LweI	GCATC	2 cut(s)	195, 305
MaeI	CTAG	2 cut(s)	54, 93
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	4 cut(s)	37, 49, 109, 115
MalI	GATC	2 cut(s)	77, 196
MboI	GATC	2 cut(s)	75, 194
MboII	GAAGA	1 cut(s)	383
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	2 cut(s)	34, 82
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	1 cut(s)	158
MspI	CCGG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	2 cut(s)	75, 194
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	2 cut(s)	256, 279
NmuCI	GTSAC	3 cut(s)	37, 49, 115
PctI	GAATGC	1 cut(s)	235
PinAI	ACCGGT	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	2 cut(s)	34, 82
PpsI	GAGTC	2 cut(s)	34, 82
Ppu21I	YACGTR	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	256, 279
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	75, 194
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	2 cut(s)	34, 82
SfaNI	GCATC	2 cut(s)	195, 305
SfcI	CTRYAG	2 cut(s)	12, 288
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	2 cut(s)	54, 93
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	49, 115
TaiI	ACGT	1 cut(s)	310
TasI	AATT	1 cut(s)	135
TauI	GCSGC	1 cut(s)	260
TscAI	CASTG	3 cut(s)	54, 106, 267
TseFI	GTSAC	3 cut(s)	37, 49, 115
Tsp45I	GTSAC	3 cut(s)	37, 49, 115
TspRI	CASTG	3 cut(s)	54, 106, 267
XmaJI	CCTAGG	1 cut(s)	92
XspI	CTAG	2 cut(s)	54, 93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.