Rh6AG509900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004260
Physical Location & Seq
Forward (+)
68131226 .. 68133369
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG509900.1

Sequence Viewer

Length: 363 bp
ATGGCAACAGATGGAGGGCCAAATCTCATGGATATTGTTGGCCGGTCCATGGAGATGCTGAAGGGGATACCAAGTTGGAATGCTCCCTGTCCCATTCAATCTGGAGCCCCACTGACTATACCAGTGGCTCCCAAAGCTATAGAAGCAGCACAAGTAAGTGGTTTGAAGCGCTCAGCTTTGTCTGTGCAAGCTCGTCCAGGTAAGAAGGCTAAACTGCGTTCTGATTCTTCTGCGTTAATGTGCTTGGATGTGGAAGAGGGTTTTAGCTTACCTAATTTTAATGGGAAAGTGAAACTCTCACCTTTGAAGACTAAAAGGGGTAGGCCTAAAGGGTCTAAGAATCAGTTAGGACCAAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.64

Weight (kDa)

10.21

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 80
AfeI AGCGCT 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 3 cut(s) 98, 166, 307
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 4 cut(s) 137, 176, 191, 267
AluI AGCT 4 cut(s) 137, 176, 191, 267
Aor51HI AGCGCT 1 cut(s) 170
AoxI GGCC 3 cut(s) 17, 40, 323
ApeKI GCWGC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 3 cut(s) 17, 45, 350
AsuHPI GGTGA 1 cut(s) 291
AvaII GGWCC 2 cut(s) 45, 350
BanII GRGCYC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 198
BciVI GTATCC 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 172
BfuI GTATCC 1 cut(s) 60
BisI GCNGC 1 cut(s) 147
BlpI GCTNAGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 2 cut(s) 45, 350
BmgT120I GGNCC 3 cut(s) 17, 45, 350
BmiI GGNNCC 2 cut(s) 106, 129
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 122
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 158
BshFI GGCC 3 cut(s) 19, 42, 325
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 3 cut(s) 19, 42, 325
Bsp1286I GDGCHC 1 cut(s) 109
Bsp1720I GCTNAGC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 48
BspANI GGCC 3 cut(s) 19, 42, 325
BspCNI CTCAG 1 cut(s) 185
BspLI GGNNCC 2 cut(s) 106, 129
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 172, 336
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 314
BsuI GTATCC 1 cut(s) 60
BsuRI GGCC 3 cut(s) 19, 42, 325
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 110, 129
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 3 cut(s) 17, 45, 350
CviAII CATG 2 cut(s) 28, 49
DdeI CTNAG 2 cut(s) 172, 336
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 45, 350
Eco47III AGCGCT 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 31, 52
FaiI YATR 4 cut(s) 29, 50, 119, 140
FaqI GGGAC 1 cut(s) 75
FatI CATG 2 cut(s) 27, 48
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 147
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 3 cut(s) 19, 42, 325
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 171
Hin1II CATG 2 cut(s) 31, 52
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 2 cut(s) 224, 340
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 291
Hpy188I TCNGA 1 cut(s) 223
Hpy188III TCNNGA 1 cut(s) 102
HpyAV CCTTC 2 cut(s) 55, 199
HpyCH4V TGCA 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
HpyF3I CTNAG 2 cut(s) 172, 336
Hsp92II CATG 2 cut(s) 31, 52
HspAI GCGC 1 cut(s) 169
LmnI GCTCC 3 cut(s) 88, 104, 133
LpnPI CCDG 6 cut(s) 56, 87, 100, 135, 183, 210
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 45
MboII GAAGA 3 cut(s) 219, 266, 319
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 1 cut(s) 274
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 2 cut(s) 8, 250
MseI TTAA 2 cut(s) 236, 279
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NcoI CCATGG 1 cut(s) 48
NlaIII CATG 2 cut(s) 31, 52
NlaIV GGNNCC 2 cut(s) 106, 129
PceI AGGCCT 1 cut(s) 325
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 2 cut(s) 224, 340
PkrI GCNGC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 106, 129
PspPI GGNCC 3 cut(s) 17, 45, 350
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 236, 279
SatI GCNGC 1 cut(s) 147
Sau96I GGNCC 3 cut(s) 17, 45, 350
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 109
SetI ASST 7 cut(s) 139, 178, 193, 202, 269, 274, 304
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 2 cut(s) 45, 350
SmiMI CAYNNNNRTG 1 cut(s) 53
Sse9I AATT 1 cut(s) 274
SseBI AGGCCT 1 cut(s) 325
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 48
TasI AATT 1 cut(s) 274
TfiI GAWTC 2 cut(s) 224, 340
Tru1I TTAA 2 cut(s) 236, 279
Tru9I TTAA 2 cut(s) 236, 279
TscAI CASTG 2 cut(s) 117, 129
TseI GCWGC 1 cut(s) 146
TspRI CASTG 2 cut(s) 117, 129
VpaK11BI GGWCC 2 cut(s) 45, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.