Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004260

Physical Location & Seq

Genomic Coordinates Forward (+)

25495977 .. 25498281

Gene Structure 2305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTTCCATTGAATTCCTTGAAGGCGTGGGTTACTGTGCGGTGTCTGCCACCATGTCTGAGTACTGAAGAATCATTTATGCTGATTGGATCGTCGATGGGACGATTTTTGCGAGCAGACAAGTTTCCTGTGCAACGGCGATCACCAGAACAACGTTTCTTGGTCCTCCTGGACGTTCGCTGGTGGCTGTGGGGGCAGCGAACCTTCAACTTTACGAAGATGGCCAAGGCGGAGGTGGAATTGCACTACGAAAAGTTTCTGCTCAAGAAATTTGGTGTTGGGGTGATGGCAGGAATGCTGGGGATGGAGATGGGGGGTCCAGTAGCTCAGGTGGTTCTGCCAGAGACCCCTAGAGGTAGTTCTGGTGCTGCTGCGACACTAACACCACTAGTGATAGGGCTGACATCAACTGACGTCTTTGGAGATGTTGAAGGGTATACCAAGCTGGAATGCTCCTTCTCCCATTTAATCTGGAGTTCCACTAGATCTGCCGGTGGCACCTATGGCCATACAAGCGGCACAAGTGAGTGGGGCCAAGCGTTCACCATCTGTTGTGCAAGCTTGTCCAGGGGTAAGAAGGCAAAACTACTTAATGATTCTTCTGCCTTAATGTGCTTGGATGTGGAAGAGGGGTTTGGGTTACCTAATGATAATGGGATAGTGAAAATATCCCCTTTGAAGACTAAGGGGGGTATGCCTAAAGGGTCCAAGGATAAGTTGGGACCAAAAGTTCGCAGTAAGAGAGTGGCCCGGAAGATGATCACCAATGCTGAGCCTACTGATGAACAGGTGGGGAATGAATTGCCTGTGATGGAAAAAGAAACTCCTTTGGGAGATGAGGTGGAGTCTGAGGAGTTGATGCCTTGGCCGCTGCAACCAATGCCTCCTCACCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

32.81

Weight (kDa)

8.47

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004260)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007646 RLG00000008043 RLG00000008044 RLG00000019654 RLG00000023898 RLG00000033256 RLG00000033669
rosa_multiflora	Rmu_sc0001544.1_g000023 Rmu_sc0006181.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093260
rosa_samantha	Rh1BG212600 Rh2AG404300 Rh2BG397500 Rh3AG108400 Rh5AG213700 Rh5BG212800 Rh5CG236000 Rh5CG236100 Rh5DG217200 Rh5DG217300 Rh6AG116800 Rh6AG116900 Rh6AG509900 Rh6BG110900 Rh6CG108500 Rh6DG098900 Rh6DG207600 Rh6DG510800 Rh7AG206200 Rh7BG210100 Rh7CG183200 Rh7DG213400
rosa_wichuraiana	Rw5G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	437
AciI	CCGC	4 cut(s)	40, 230, 516, 869
AclI	AACGTT	1 cut(s)	154
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	3 cut(s)	222, 505, 866
AcsI	RAATTY	2 cut(s)	13, 269
AcuI	CTGAAG	1 cut(s)	87
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	1 cut(s)	64
AgsI	TTSAA	5 cut(s)	13, 22, 208, 431, 679
AhlI	ACTAGT	1 cut(s)	388
AjnI	CCWGG	2 cut(s)	168, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AloI	GAACNNNNNNTCC	2 cut(s)	714, 746
AluBI	AGCT	3 cut(s)	326, 445, 561
AluI	AGCT	3 cut(s)	326, 445, 561
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	5 cut(s)	222, 505, 532, 747, 866
ApeKI	GCWGC	4 cut(s)	196, 368, 371, 871
ApoI	RAATTY	2 cut(s)	13, 269
ArsI	GACNNNNNNTTYG	2 cut(s)	714, 746
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	6 cut(s)	163, 317, 532, 705, 722, 748
AsuC2I	CCSGG	1 cut(s)	751
AsuHPI	GGTGA	5 cut(s)	135, 295, 535, 754, 881
AvaII	GGWCC	4 cut(s)	163, 317, 705, 722
BalI	TGGCCA	2 cut(s)	224, 507
BanI	GGYRCC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	686
BbvI	GCAGC	4 cut(s)	208, 355, 358, 858
BccI	CCATC	7 cut(s)	91, 214, 280, 298, 304, 554, 805
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	2 cut(s)	170, 568
BclI	TGATCA	1 cut(s)	759
BcnI	CCSGG	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	338
BcuI	ACTAGT	1 cut(s)	388
BfaI	CTAG	3 cut(s)	351, 389, 483
BglII	AGATCT	1 cut(s)	485
BisI	GCNGC	6 cut(s)	197, 369, 372, 517, 869, 872
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	6 cut(s)	198, 370, 373, 518, 870, 873
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	3 cut(s)	170, 568, 751
Bme18I	GGWCC	4 cut(s)	163, 317, 705, 722
BmgT120I	GGNCC	6 cut(s)	163, 317, 532, 705, 722, 748
BmiI	GGNNCC	6 cut(s)	6, 318, 499, 533, 706, 723
BmrFI	CCNGG	3 cut(s)	170, 568, 751
BmsI	GCATC	1 cut(s)	849
BpiI	GAAGAC	1 cut(s)	686
BpmI	CTGGAG	1 cut(s)	493
Bpu10I	CCTNAGC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	751
BsaHI	GRCGYC	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	4 cut(s)	225, 567, 708, 863
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	320
BseBI	CCWGG	2 cut(s)	170, 568
BseDI	CCNNGG	4 cut(s)	225, 567, 708, 863
BseGI	GGATG	2 cut(s)	309, 625
BseMII	CTCAG	4 cut(s)	50, 341, 762, 840
BseNI	ACTGG	1 cut(s)	320
BseRI	GAGGAG	2 cut(s)	866, 876
BseXI	GCAGC	4 cut(s)	208, 355, 358, 858
BseYI	CCCAGC	1 cut(s)	298
BshFI	GGCC	5 cut(s)	224, 507, 534, 749, 868
BshNI	GGYRCC	1 cut(s)	497
BsiSI	CCGG	2 cut(s)	492, 751
BslFI	GGGAC	2 cut(s)	114, 735
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	114, 735
BsmI	GAATGC	2 cut(s)	300, 455
BsnI	GGCC	5 cut(s)	224, 507, 534, 749, 868
Bso31I	GGTCTC	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	89, 140, 485, 759
Bsp1720I	GCTNAGC	1 cut(s)	771
BspACI	CCGC	4 cut(s)	40, 230, 516, 869
BspANI	GGCC	5 cut(s)	224, 507, 534, 749, 868
BspCNI	CTCAG	4 cut(s)	51, 340, 763, 841
BspLI	GGNNCC	6 cut(s)	6, 318, 499, 533, 706, 723
BspPI	GGATC	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	4 cut(s)	225, 567, 708, 863
BssMI	GATC	4 cut(s)	89, 140, 485, 759
BssNAI	GTATAC	1 cut(s)	438
BssNI	GRCGYC	1 cut(s)	414
BssT1I	CCWWGG	3 cut(s)	225, 708, 863
Bst1107I	GTATAC	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	170, 568
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	414
BstAPI	GCANNNNNTGC	1 cut(s)	880
BstC8I	GCNNGC	2 cut(s)	114, 559
BstDEI	CTNAG	5 cut(s)	59, 327, 684, 771, 849
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	309, 625
BstKTI	GATC	4 cut(s)	92, 143, 488, 762
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	4 cut(s)	89, 140, 485, 759
BstMWI	GCNNNNNNNGC	6 cut(s)	46, 193, 504, 513, 868, 880
BstNI	CCWGG	2 cut(s)	170, 568
BstPI	GGTNACC	1 cut(s)	639
BstSCI	CCNGG	3 cut(s)	168, 566, 749
BstV1I	GCAGC	4 cut(s)	208, 355, 358, 858
BstV2I	GAAGAC	1 cut(s)	686
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BstZ17I	GTATAC	1 cut(s)	438
BsuRI	GGCC	5 cut(s)	224, 507, 534, 749, 868
BtsCI	GGATG	2 cut(s)	309, 625
Cac8I	GCNNGC	2 cut(s)	114, 559
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	6 cut(s)	163, 317, 532, 705, 722, 748
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	2 cut(s)	54, 897
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	5 cut(s)	59, 327, 684, 771, 849
DpnI	GATC	4 cut(s)	91, 142, 487, 761
DpnII	GATC	4 cut(s)	89, 140, 485, 759
EaeI	YGGCCR	3 cut(s)	222, 505, 866
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
EciI	GGCGGA	1 cut(s)	245
Eco130I	CCWWGG	3 cut(s)	225, 708, 863
Eco31I	GGTCTC	1 cut(s)	338
Eco47I	GGWCC	4 cut(s)	163, 317, 705, 722
Eco57I	CTGAAG	1 cut(s)	87
Eco91I	GGTNACC	1 cut(s)	639
EcoO65I	GGTNACC	1 cut(s)	639
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	168, 566
EcoT14I	CCWWGG	3 cut(s)	225, 708, 863
ErhI	CCWWGG	3 cut(s)	225, 708, 863
FaeI	CATG	2 cut(s)	57, 900
FaiI	YATR	7 cut(s)	55, 80, 438, 504, 510, 695, 898
FaqI	GGGAC	2 cut(s)	114, 735
FatI	CATG	2 cut(s)	53, 896
FbaI	TGATCA	1 cut(s)	759
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	6 cut(s)	197, 369, 372, 517, 869, 872
FokI	GGATG	2 cut(s)	316, 632
Fsp4HI	GCNGC	6 cut(s)	197, 369, 372, 517, 869, 872
FspBI	CTAG	3 cut(s)	351, 389, 483
GluI	GCNGC	6 cut(s)	197, 369, 372, 517, 869, 872
GsaI	CCCAGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	5 cut(s)	224, 507, 534, 749, 868
HapII	CCGG	2 cut(s)	492, 751
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	2 cut(s)	57, 900
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	3 cut(s)	71, 596, 845
HpaII	CCGG	2 cut(s)	492, 751
HphI	GGTGA	5 cut(s)	135, 295, 535, 754, 881
Hpy166II	GTNNAC	2 cut(s)	438, 543
Hpy188I	TCNGA	2 cut(s)	60, 850
Hpy188III	TCNNGA	2 cut(s)	265, 472
Hpy8I	GTNNAC	2 cut(s)	438, 543
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	5 cut(s)	16, 214, 425, 466, 571
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	3 cut(s)	154, 174, 414
HpyCH4V	TGCA	4 cut(s)	133, 244, 557, 874
HpyF10VI	GCNNNNNNNGC	6 cut(s)	46, 193, 504, 513, 868, 880
HpyF3I	CTNAG	5 cut(s)	59, 327, 684, 771, 849
HpySE526I	ACGT	3 cut(s)	154, 174, 414
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	2 cut(s)	57, 900
Ksp22I	TGATCA	1 cut(s)	759
Kzo9I	GATC	4 cut(s)	89, 140, 485, 759
LmnI	GCTCC	1 cut(s)	458
Lsp1109I	GCAGC	4 cut(s)	208, 355, 358, 858
LweI	GCATC	1 cut(s)	849
MaeI	CTAG	3 cut(s)	351, 389, 483
MaeII	ACGT	3 cut(s)	154, 174, 414
MaeIII	GTNAC	2 cut(s)	31, 639
MalI	GATC	4 cut(s)	91, 142, 487, 761
MboI	GATC	4 cut(s)	89, 140, 485, 759
MboII	GAAGA	6 cut(s)	80, 229, 591, 638, 691, 766
MflI	RGATCY	1 cut(s)	485
MlsI	TGGCCA	2 cut(s)	224, 507
MluCI	AATT	4 cut(s)	13, 239, 269, 800
MluNI	TGGCCA	2 cut(s)	224, 507
MlyI	GAGTC	1 cut(s)	854
MnlI	CCTC	8 cut(s)	176, 226, 347, 622, 832, 844, 894, 897
Mox20I	TGGCCA	2 cut(s)	224, 507
MroXI	GAANNNNTTC	1 cut(s)	255
MscI	TGGCCA	2 cut(s)	224, 507
MseI	TTAA	3 cut(s)	467, 591, 608
Msp20I	TGGCCA	2 cut(s)	224, 507
MspA1I	CMGCKG	1 cut(s)	871
MspI	CCGG	2 cut(s)	492, 751
MspR9I	CCNGG	3 cut(s)	170, 568, 751
Mva1269I	GAATGC	2 cut(s)	300, 455
MvaI	CCWGG	2 cut(s)	170, 568
MwoI	GCNNNNNNNGC	6 cut(s)	46, 193, 504, 513, 868, 880
NciI	CCSGG	1 cut(s)	751
NdeII	GATC	4 cut(s)	89, 140, 485, 759
NlaIII	CATG	2 cut(s)	57, 900
NlaIV	GGNNCC	6 cut(s)	6, 318, 499, 533, 706, 723
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PctI	GAATGC	2 cut(s)	300, 455
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	71, 596
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	6 cut(s)	198, 370, 373, 518, 870, 873
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
Psp1406I	AACGTT	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	168, 566
PspEI	GGTNACC	1 cut(s)	639
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	2 cut(s)	168, 566
PspN4I	GGNNCC	6 cut(s)	6, 318, 499, 533, 706, 723
PspPI	GGNCC	6 cut(s)	163, 317, 532, 705, 722, 748
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	467, 591, 608
SatI	GCNGC	6 cut(s)	197, 369, 372, 517, 869, 872
Sau3AI	GATC	4 cut(s)	89, 140, 485, 759
Sau96I	GGNCC	6 cut(s)	163, 317, 532, 705, 722, 748
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	3 cut(s)	170, 568, 751
SfaNI	GCATC	1 cut(s)	849
SinI	GGWCC	4 cut(s)	163, 317, 705, 722
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	388
Sse9I	AATT	4 cut(s)	13, 239, 269, 800
SsiI	CCGC	4 cut(s)	40, 230, 516, 869
SspMI	CTAG	3 cut(s)	351, 389, 483
StyD4I	CCNGG	3 cut(s)	168, 566, 749
StyI	CCWWGG	3 cut(s)	225, 708, 863
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	3 cut(s)	157, 177, 417
TaqI	TCGA	1 cut(s)	95
TasI	AATT	4 cut(s)	13, 239, 269, 800
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	2 cut(s)	519, 871
TfiI	GAWTC	2 cut(s)	71, 596
Tru1I	TTAA	3 cut(s)	467, 591, 608
Tru9I	TTAA	3 cut(s)	467, 591, 608
TseI	GCWGC	4 cut(s)	196, 368, 371, 871
TspDTI	ATGAA	2 cut(s)	798, 813
VpaK11BI	GGWCC	4 cut(s)	163, 317, 705, 722
XapI	RAATTY	2 cut(s)	13, 269
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 715
XmiI	GTMKAC	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	3 cut(s)	351, 389, 483
ZraI	GACGTC	1 cut(s)	415
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.