RLG00000008044

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004260
Physical Location & Seq
Forward (+)
24869569 .. 24871437
1869 bp
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UTR
Exon/CDS
Intron
RLM00000008044

Sequence Viewer

Length: 375 bp
ATGGCAACAAGTGGAGTGCCAAATCTCATGGACATTGTTGGCTGGTCCATGGAGATGTTGAAGTGGATACCAAGTTGGAATGCTCCATCTCCAGGTGGCTACCATAGGCATAGAAGCAGCACAAGTAAGTGGCGTGAAGCGCTCAGCTTTTTCTATGCAAGCTCGTCCAGACTAAGAGGGGTAGGCCGAAAGGGTCCAAGAATAAGTTGGGACCAAAGGTTCGTAGTAAGAGAGTGCTTCGGAAGCTTACTATCGACGAGACTACTGAAAGACGGTGGAAATGACTTGTCTGTGATGGAAGATGCAAATCCAGCGGGGGAGAACGTGGTTTCTGAGGAGCCGACGGTGATGGAAGCTACGAGGCCTAGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.84

Weight (kDa)

9.42

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 314
AfeI AGCGCT 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 1 cut(s) 61
AjnI CCWGG 1 cut(s) 91
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 4 cut(s) 147, 162, 246, 356
AluI AGCT 4 cut(s) 147, 162, 246, 356
Alw26I GTCTC 1 cut(s) 253
Aor51HI AGCGCT 1 cut(s) 141
AoxI GGCC 2 cut(s) 184, 362
ApeKI GCWGC 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspA2I CCTAGG 1 cut(s) 365
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 3 cut(s) 45, 194, 211
AsuHPI GGTGA 1 cut(s) 358
AvaII GGWCC 3 cut(s) 45, 194, 211
AvrII CCTAGG 1 cut(s) 365
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 94, 289, 343
BciT130I CCWGG 1 cut(s) 93
BciVI GTATCC 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 143
BfuI GTATCC 1 cut(s) 60
BisI GCNGC 1 cut(s) 118
BlnI CCTAGG 1 cut(s) 365
BlpI GCTNAGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 3 cut(s) 45, 194, 211
BmgT120I GGNCC 3 cut(s) 45, 194, 211
BmiI GGNNCC 3 cut(s) 195, 212, 339
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 48, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 48, 365
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 2 cut(s) 157, 324
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 129
BshFI GGCC 2 cut(s) 186, 364
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 2 cut(s) 186, 364
Bsp1720I GCTNAGC 1 cut(s) 143
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 314
BspANI GGCC 2 cut(s) 186, 364
BspCNI CTCAG 2 cut(s) 156, 325
BspLI GGNNCC 3 cut(s) 195, 212, 339
BssECI CCNNGG 2 cut(s) 48, 365
BssT1I CCWWGG 2 cut(s) 48, 365
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 275, 346
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 3 cut(s) 143, 173, 333
BstDSI CCRYGG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 253
BstMWI GCNNNNNNNGC 3 cut(s) 139, 243, 311
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 129
BsuI GTATCC 1 cut(s) 60
BsuRI GGCC 2 cut(s) 186, 364
BtgI CCRYGG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 3 cut(s) 45, 194, 211
CviAII CATG 2 cut(s) 28, 49
DdeI CTNAG 3 cut(s) 143, 173, 333
Eco130I CCWWGG 2 cut(s) 48, 365
Eco147I AGGCCT 1 cut(s) 364
Eco47I GGWCC 3 cut(s) 45, 194, 211
Eco47III AGCGCT 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 48, 365
ErhI CCWWGG 2 cut(s) 48, 365
FaeI CATG 2 cut(s) 31, 52
FaiI YATR 5 cut(s) 29, 50, 105, 111, 156
FaqI GGGAC 1 cut(s) 224
FatI CATG 2 cut(s) 27, 48
FauI CCCGC 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 1 cut(s) 366
GlaI GCGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 2 cut(s) 186, 364
HhaI GCGC 1 cut(s) 142
Hin1II CATG 2 cut(s) 31, 52
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HindIII AAGCTT 1 cut(s) 244
HphI GGTGA 1 cut(s) 358
Hpy188I TCNGA 2 cut(s) 242, 334
Hpy188III TCNNGA 1 cut(s) 168
Hpy99I CGWCG 2 cut(s) 259, 346
HpyCH4III ACNGT 2 cut(s) 275, 346
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 2 cut(s) 158, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 243, 311
HpyF3I CTNAG 3 cut(s) 143, 173, 333
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 2 cut(s) 31, 52
HspAI GCGC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 88, 337
LpnPI CCDG 5 cut(s) 28, 78, 105, 181, 324
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 324
MboII GAAGA 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 3 cut(s) 170, 328, 354
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 139, 243, 311
NcoI CCATGG 1 cut(s) 48
NlaIII CATG 2 cut(s) 31, 52
NlaIV GGNNCC 3 cut(s) 195, 212, 339
PceI AGGCCT 1 cut(s) 364
PctI GAATGC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 3 cut(s) 195, 212, 339
PspPI GGNCC 3 cut(s) 45, 194, 211
RseI CAYNNNNRTG 1 cut(s) 53
SatI GCNGC 1 cut(s) 118
Sau96I GGNCC 3 cut(s) 45, 194, 211
ScrFI CCNGG 1 cut(s) 93
SetI ASST 7 cut(s) 97, 149, 164, 221, 248, 327, 358
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 3 cut(s) 45, 194, 211
SmiMI CAYNNNNRTG 1 cut(s) 53
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 1 cut(s) 314
SspMI CTAG 1 cut(s) 366
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 2 cut(s) 48, 365
TaaI ACNGT 2 cut(s) 275, 346
TaiI ACGT 1 cut(s) 327
TaqI TCGA 1 cut(s) 254
TseI GCWGC 1 cut(s) 117
VpaK11BI GGWCC 3 cut(s) 45, 194, 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XmaJI CCTAGG 1 cut(s) 365
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.