Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004260

Physical Location & Seq

Genomic Coordinates Forward (+)

55029099 .. 55031187

Gene Structure 2089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCCAAGCTGGAACGTGATTGCTTCAACGACGAAGACTGTGGAAAAAATGGTGATGACCACGGTGATGGAGGTGGAGCAGATGAGTGGTGTCAAGCGTCATGTTGGGTTGGTTCCAGCTCGACCCAAAAGGAAAGCTACGCTGAAGATTGATTCGTCTTCTTTGGCTTGTTTGGATGTTAAACAAGGCTTTGACTTACCCAATCACAATGGGGTGGTGAAGATTTCTCCAGTGAAGAATAAATGGGGTAGACCTAAAGGGTCAAAAAACAAGAAAGGTCCTGGTGTGAAGAGTAAGAGAGTGGCCCGAAAATTGGTGAGCGAAGGCAATATGATGGTCGATGCTAGGCCAATGGAGGGTGAGACATCTACTTTGGTGGCTTCTGATGGGGCTTCATTGAAGGTTACTAAGGTGGAGGCTACTGAGCTGAATCTGCTTACATATGAAATAAAAACAAATTCTTCAAAGCATGTAGTTTCAAATTTTCCACATGTTACAAGCTGCATGCAAGCCAATGAGGATAGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.2

Weight (kDa)

9.93

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004260)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007646 RLG00000008043 RLG00000008044 RLG00000019654 RLG00000023898 RLG00000033256 RLG00000033669
rosa_multiflora	Rmu_sc0001544.1_g000023 Rmu_sc0006181.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093260
rosa_samantha	Rh1BG212600 Rh2AG404300 Rh2BG397500 Rh3AG108400 Rh5AG213700 Rh5BG212800 Rh5CG236000 Rh5CG236100 Rh5DG217200 Rh5DG217300 Rh6AG116800 Rh6AG116900 Rh6AG509900 Rh6BG110900 Rh6CG108500 Rh6DG098900 Rh6DG207600 Rh6DG510800 Rh7AG206200 Rh7BG210100 Rh7CG183200 Rh7DG213400
rosa_wichuraiana	Rw5G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	457, 481
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	313, 356
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	4 cut(s)	27, 400, 465, 480
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	5 cut(s)	9, 119, 137, 427, 501
AluI	AGCT	5 cut(s)	9, 119, 137, 427, 501
Alw26I	GTCTC	1 cut(s)	356
AoxI	GGCC	2 cut(s)	303, 347
ApeKI	GCWGC	1 cut(s)	501
ApoI	RAATTY	2 cut(s)	457, 481
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AspS9I	GGNCC	2 cut(s)	278, 304
AsuHPI	GGTGA	5 cut(s)	64, 76, 229, 328, 371
AvaII	GGWCC	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	41, 150
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	3 cut(s)	61, 328, 380
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	1 cut(s)	502
BlsI	GCNGC	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	278, 304
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	41, 150
BpmI	CTGGAG	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 356
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	313, 356
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	488
BshFI	GGCC	2 cut(s)	305, 349
BslI	CCNNNNNNNGG	2 cut(s)	313, 356
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	305, 349
BspANI	GGCC	2 cut(s)	305, 349
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	40, 64
Bst6I	CTCTTC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	506, 510
BstDEI	CTNAG	2 cut(s)	408, 423
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	3 cut(s)	473, 494, 508
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	488
BstV2I	GAAGAC	2 cut(s)	41, 150
BstXI	CCANNNNNNTGG	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	305, 349
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	506, 510
Cfr13I	GGNCC	2 cut(s)	278, 304
CseI	GACGC	1 cut(s)	86
CviAII	CATG	4 cut(s)	101, 470, 491, 505
DdeI	CTNAG	2 cut(s)	408, 423
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	280
FaeI	CATG	4 cut(s)	104, 473, 494, 508
FaiI	YATR	7 cut(s)	102, 332, 442, 444, 471, 492, 506
FatI	CATG	4 cut(s)	100, 469, 490, 504
FauNDI	CATATG	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	502
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	502
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	502
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	305, 349
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	104, 473, 494, 508
HinfI	GANTC	2 cut(s)	152, 430
HphI	GGTGA	5 cut(s)	64, 76, 229, 328, 371
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	385
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	317, 394
HpyCH4III	ACNGT	2 cut(s)	40, 64
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	504, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	2 cut(s)	408, 423
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	104, 473, 494, 508
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	129, 243, 267, 294
Lsp1109I	GCAGC	1 cut(s)	488
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	403, 493
MboII	GAAGA	7 cut(s)	46, 150, 157, 232, 247, 301, 453
MluCI	AATT	3 cut(s)	311, 457, 481
MnlI	CCTC	4 cut(s)	64, 349, 409, 511
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	433
NdeI	CATATG	1 cut(s)	442
NlaIII	CATG	4 cut(s)	104, 473, 494, 508
NlaIV	GGNNCC	1 cut(s)	114
NspI	RCATGY	3 cut(s)	473, 494, 508
PaeI	GCATGC	1 cut(s)	508
PciI	ACATGT	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	152, 430
PkrI	GCNGC	1 cut(s)	503
PpuMI	RGGWCCY	1 cut(s)	278
PscI	ACATGT	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	2 cut(s)	278, 304
PspPPI	RGGWCCY	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	502
Sau96I	GGNCC	2 cut(s)	278, 304
ScrFI	CCNGG	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	65
SphI	GCATGC	1 cut(s)	508
Sse9I	AATT	3 cut(s)	311, 457, 481
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	40, 64
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	121, 339
TasI	AATT	3 cut(s)	311, 457, 481
TfiI	GAWTC	2 cut(s)	152, 430
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	1 cut(s)	501
TspDTI	ATGAA	2 cut(s)	384, 459
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	2 cut(s)	457, 481
XceI	RCATGY	3 cut(s)	473, 494, 508
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.