RLG00000023898

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
29688653 .. 29689080
428 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023898

Sequence Viewer

Length: 321 bp
ATGGCTACTGAGGCGGTACAGTTGAGTAGAGCAAAGCGACTCGCTGGGATTGATCATACTAGGCTTAGGAAAAAGTCCAAGTTGAAGGAAAATTCGTTAAGGTTCTCTTGCTTGGATATTGATAAGGGTTTTGGTTTGTCTAACACCAATGGAGTGGTGAAGGTGTCTCCATCAAAGAATAGAAGAGGAATGCCTCAAGGATCGAAGAATAAAGTCAAATGCCCAAGAGTGCATAGTAAGAGGGTGCTTTATGCGAAGGTAGCTGAGGAAAGTGAGGCTCCTCTCCTATTGGAGATGGGTCCTACCTCGACTCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.74

Weight (kDa)

10.25

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 91
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 299
BbvCI CCTCAGC 1 cut(s) 264
BccI CCATC 2 cut(s) 178, 289
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 279, 300
Bpu10I CCTNAGC 2 cut(s) 65, 264
BpuEI CTTGAG 2 cut(s) 180, 297
BseMII CTCAG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 52, 200
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 279, 300
BspPI GGATC 1 cut(s) 208
BssMI GATC 2 cut(s) 52, 200
Bst4CI ACNGT 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 178
BstDEI CTNAG 3 cut(s) 9, 65, 264
BstKTI GATC 2 cut(s) 55, 203
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 52, 200
BstMWI GCNNNNNNNGC 2 cut(s) 11, 260
BstXI CCANNNNNNTGG 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 17
CviJI RGCY 4 cut(s) 5, 64, 263, 278
CviKI_1 RGCY 4 cut(s) 5, 64, 263, 278
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 3 cut(s) 9, 65, 264
DpnI GATC 2 cut(s) 54, 202
DpnII GATC 2 cut(s) 52, 200
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 299
FaiI YATR 3 cut(s) 57, 234, 252
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FbaI TGATCA 1 cut(s) 52
FspBI CTAG 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 48
HinfI GANTC 2 cut(s) 39, 310
HphI GGTGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 79, 154, 250
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 260
HpyF3I CTNAG 3 cut(s) 9, 65, 264
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 2 cut(s) 52, 200
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 1 cut(s) 30
MaeI CTAG 1 cut(s) 60
MalI GATC 2 cut(s) 54, 202
MboI GATC 2 cut(s) 52, 200
MboII GAAGA 2 cut(s) 195, 217
MluCI AATT 1 cut(s) 91
MlyI GAGTC 2 cut(s) 33, 304
MnlI CCTC 8 cut(s) 4, 179, 204, 234, 259, 268, 291, 316
MseI TTAA 1 cut(s) 98
Mva1269I GAATGC 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 11, 260
NdeII GATC 2 cut(s) 52, 200
NlaIV GGNNCC 2 cut(s) 279, 300
PctI GAATGC 1 cut(s) 195
PleI GAGTC 2 cut(s) 33, 304
PpsI GAGTC 2 cut(s) 33, 304
PpuMI RGGWCCY 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 279, 300
PspPI GGNCC 1 cut(s) 299
PspPPI RGGWCCY 1 cut(s) 299
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 98
Sau3AI GATC 2 cut(s) 52, 200
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 2 cut(s) 33, 304
SetI ASST 5 cut(s) 104, 165, 261, 265, 308
SgeI CNNG 8 cut(s) 53, 57, 72, 91, 120, 124, 209, 237
SinI GGWCC 1 cut(s) 299
SmlI CTYRAG 2 cut(s) 195, 312
SmoI CTYRAG 2 cut(s) 195, 312
Sse9I AATT 1 cut(s) 91
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 203, 308
TasI AATT 1 cut(s) 91
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 91
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.