Rh2AG404300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004260
Physical Location & Seq
Reverse (-)
60216971 .. 60217438
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG404300.1

Sequence Viewer

Length: 468 bp
ATGGAGTTGCTGAAGAATGTGCCAAGTTGGAATGCACCTACTCCTGTGCAAACTGGTGCTCCGGTGATTGATTCCGCAGTGGTGGCTATGGTTATGGAAGTGGAGCAGTTGAGTAGAGTTAAGCGCTCACCTAATGTGATGCAGATTCATCCGGAGAAAAGGTCAAAGTTGCGGGCTGATTCTGCTGGTTTGACGTGCTTTTATGTTGATGAGGGGTTTAAGCTACCCAATGACAATGGTGTGGTGAAAGCATCTCCCTTGAAGACAATGAGAAGCAGACCAAAAGGGTCCAAAAATAAATTGGGACCGACAGTTCGTAGCAAGGGAGTGGCTAGGAAGTTGGGGAAGGGTGCTAAAGAAGAGAATGGGGAGCTTGTGATGGAAGAGTCCAATGAAACTCCAATATTGGAGAGAGATAAGCTAGGTGAGAGCCCTCTTGTCTTGGAGATGGCTCCTGCTCCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.86

Weight (kDa)

9.41

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 2 cut(s) 75, 172
AcuI CTGAAG 1 cut(s) 32
AfeI AGCGCT 1 cut(s) 125
AgsI TTSAA 1 cut(s) 262
AjiI CACGTC 1 cut(s) 195
AloI GAACNNNNNNTCC 2 cut(s) 297, 329
AluBI AGCT 3 cut(s) 223, 373, 421
AluI AGCT 3 cut(s) 223, 373, 421
Alw21I GWGCWC 1 cut(s) 61
Aor13HI TCCGGA 1 cut(s) 151
Aor51HI AGCGCT 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 288, 305
AsuHPI GGTGA 4 cut(s) 76, 120, 256, 437
AvaII GGWCC 2 cut(s) 288, 305
BanII GRGCYC 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 61
BccI CCATC 2 cut(s) 373, 442
BfaI CTAG 2 cut(s) 333, 422
BfoI RGCGCY 1 cut(s) 127
Bme18I GGWCC 2 cut(s) 288, 305
BmgBI CACGTC 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 288, 305
BmiI GGNNCC 3 cut(s) 289, 306, 453
BmsI GCATC 2 cut(s) 129, 260
BpiI GAAGAC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 444
BsaWI WCCGGW 2 cut(s) 61, 151
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 146, 176
Bse1I ACTGG 2 cut(s) 58, 461
BseAI TCCGGA 1 cut(s) 151
BseGI GGATG 1 cut(s) 148
BseNI ACTGG 2 cut(s) 58, 461
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 2 cut(s) 62, 152
BslFI GGGAC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 318
BsmI GAATGC 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 61, 434
Bsp13I TCCGGA 1 cut(s) 151
BspACI CCGC 2 cut(s) 75, 172
BspEI TCCGGA 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 289, 306, 453
BsrI ACTGG 2 cut(s) 58, 461
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 2 cut(s) 354, 378
BstC8I GCNNGC 1 cut(s) 174
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 83, 182
BstV2I GAAGAC 1 cut(s) 269
BtrI CACGTC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 174
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 288, 305
CviJI RGCY 8 cut(s) 86, 176, 223, 332, 373, 421, 432, 452
CviKI_1 RGCY 8 cut(s) 86, 176, 223, 332, 373, 421, 432, 452
Eam1104I CTCTTC 2 cut(s) 354, 378
EarI CTCTTC 2 cut(s) 354, 378
Eco24I GRGCYC 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 288, 305
Eco47III AGCGCT 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 434
FaiI YATR 3 cut(s) 89, 95, 204
FaqI GGGAC 1 cut(s) 318
FauI CCCGC 1 cut(s) 165
FokI GGATG 1 cut(s) 135
FriOI GRGCYC 1 cut(s) 434
FspBI CTAG 2 cut(s) 333, 422
GlaI GCGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 127
HapII CCGG 2 cut(s) 62, 152
HhaI GCGC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 4 cut(s) 71, 145, 179, 386
HpaII CCGG 2 cut(s) 62, 152
HphI GGTGA 4 cut(s) 76, 120, 256, 437
Hpy188III TCNNGA 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 35, 49, 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 182
HpySE526I ACGT 1 cut(s) 194
HspAI GCGC 1 cut(s) 124
Kpn2I TCCGGA 1 cut(s) 151
LmnI GCTCC 5 cut(s) 64, 103, 370, 457, 463
LpnPI CCDG 5 cut(s) 39, 57, 75, 165, 171
LweI GCATC 2 cut(s) 129, 260
MaeI CTAG 2 cut(s) 333, 422
MaeII ACGT 1 cut(s) 194
MboII GAAGA 4 cut(s) 25, 274, 371, 395
MhlI GDGCHC 2 cut(s) 61, 434
MluCI AATT 1 cut(s) 299
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 8
MnlI CCTC 2 cut(s) 205, 444
MroI TCCGGA 1 cut(s) 151
MseI TTAA 3 cut(s) 120, 219, 466
MspI CCGG 2 cut(s) 62, 152
Mva1269I GAATGC 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 83, 182
NlaIV GGNNCC 3 cut(s) 289, 306, 453
PctI GAATGC 1 cut(s) 37
PfeI GAWTC 3 cut(s) 71, 145, 179
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PspN4I GGNNCC 3 cut(s) 289, 306, 453
PspPI GGNCC 2 cut(s) 288, 305
SaqAI TTAA 3 cut(s) 120, 219, 466
Sau96I GGNCC 2 cut(s) 288, 305
SchI GAGTC 1 cut(s) 395
SduI GDGCHC 2 cut(s) 61, 434
SetI ASST 8 cut(s) 40, 133, 164, 197, 225, 375, 423, 427
SfaNI GCATC 2 cut(s) 129, 260
SinI GGWCC 2 cut(s) 288, 305
Sse9I AATT 1 cut(s) 299
SsiI CCGC 2 cut(s) 75, 172
SspI AATATT 1 cut(s) 405
SspMI CTAG 2 cut(s) 333, 422
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 197
TaqII GACCGA 1 cut(s) 322
TasI AATT 1 cut(s) 299
TfiI GAWTC 3 cut(s) 71, 145, 179
Tru1I TTAA 3 cut(s) 120, 219, 466
Tru9I TTAA 3 cut(s) 120, 219, 466
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 137, 408
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 2 cut(s) 288, 305
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 2 cut(s) 333, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.