RLG00000033256

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004260
Physical Location & Seq
Forward (+)
25041227 .. 25041631
405 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033256

Sequence Viewer

Length: 405 bp
ATGCTCCGTCTCCCATTTAATCTGGAGTTCCACTGGATATGTCGGTGGCACCTATGGGCTATACAAGCGGCACCAATGAGTGGGGCCAAGTGTTCACCATCTACTATGCAAGCTTGTGTAGGTAAGAAGGCAAAACTGCTTAATGATTCTTCTGCCTTAATGTGCTTAGATGTGGAGGAGAGGTTTGGGTTGCCTAATGATAATGGGATAGTGAAAATATCCCTTCTGAAGACTAAGAGGGGTAGGCCTAAAGGGTCCAAGAATAAGTTGGGACCAAAATTTCGCAGTAAGAGAGTGGCCCGGAAGATGATCACCAATGCTAAGCCTACTAATGAACAAGTGGGGAATGAGTTGCCTGTGATGGAAGAAGAAACTCCTTTGGGAGATGAGGTGGATTCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.01

Weight (kDa)

9.44

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 48, 70
AccB7I CCANNNNNTGG 1 cut(s) 80
AciI CCGC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 80
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 3 cut(s) 84, 245, 297
ApoI RAATTY 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AspS9I GGNCC 4 cut(s) 84, 255, 272, 298
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 87, 304
AvaII GGWCC 2 cut(s) 255, 272
BanI GGYRCC 2 cut(s) 48, 70
BbsI GAAGAC 1 cut(s) 236
BccI CCATC 2 cut(s) 106, 355
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 14
BisI GCNGC 1 cut(s) 69
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 2 cut(s) 255, 272
BmgT120I GGNCC 4 cut(s) 84, 255, 272, 298
BmiI GGNNCC 5 cut(s) 50, 72, 85, 256, 273
BmrFI CCNGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 236
BpmI CTGGAG 1 cut(s) 44
Bpu1102I GCTNAGC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 301
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 191
BshFI GGCC 3 cut(s) 86, 247, 299
BshNI GGYRCC 2 cut(s) 48, 70
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 3 cut(s) 86, 247, 299
Bsp143I GATC 1 cut(s) 309
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 68
BspANI GGCC 3 cut(s) 86, 247, 299
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 5 cut(s) 50, 72, 85, 256, 273
BspT107I GGYRCC 2 cut(s) 48, 70
BsrI ACTGG 1 cut(s) 38
BssMI GATC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 4 cut(s) 166, 234, 321, 399
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 236
BsuRI GGCC 3 cut(s) 86, 247, 299
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 111
Cfr13I GGNCC 4 cut(s) 84, 255, 272, 298
CviJI RGCY 6 cut(s) 59, 86, 113, 247, 299, 325
CviKI_1 RGCY 6 cut(s) 59, 86, 113, 247, 299, 325
DdeI CTNAG 4 cut(s) 166, 234, 321, 399
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
Eco147I AGGCCT 1 cut(s) 247
Eco47I GGWCC 2 cut(s) 255, 272
Eco57I CTGAAG 1 cut(s) 248
Esp3I CGTCTC 1 cut(s) 14
FaiI YATR 4 cut(s) 40, 55, 62, 107
FaqI GGGAC 1 cut(s) 285
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 44
HaeIII GGCC 3 cut(s) 86, 247, 299
HapII CCGG 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 2 cut(s) 146, 395
HpaII CCGG 1 cut(s) 301
HphI GGTGA 2 cut(s) 87, 304
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 228, 400
Hpy188III TCNNGA 1 cut(s) 23
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 121, 233
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 4 cut(s) 166, 234, 321, 399
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 8, 19, 314, 369
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 5 cut(s) 141, 241, 316, 377, 380
MluCI AATT 1 cut(s) 278
MnlI CCTC 4 cut(s) 169, 174, 231, 382
MseI TTAA 3 cut(s) 18, 141, 158
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 301
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 301
NdeII GATC 1 cut(s) 309
NlaIV GGNNCC 5 cut(s) 50, 72, 85, 256, 273
PceI AGGCCT 1 cut(s) 247
PfeI GAWTC 2 cut(s) 146, 395
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 1 cut(s) 70
PspN4I GGNNCC 5 cut(s) 50, 72, 85, 256, 273
PspPI GGNCC 4 cut(s) 84, 255, 272, 298
SaqAI TTAA 3 cut(s) 18, 141, 158
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 4 cut(s) 84, 255, 272, 298
ScrFI CCNGG 1 cut(s) 301
SetI ASST 5 cut(s) 54, 115, 124, 185, 393
SinI GGWCC 2 cut(s) 255, 272
Sse9I AATT 1 cut(s) 278
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 1 cut(s) 68
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 299
TasI AATT 1 cut(s) 278
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 2 cut(s) 146, 395
Tru1I TTAA 3 cut(s) 18, 141, 158
Tru9I TTAA 3 cut(s) 18, 141, 158
TscAI CASTG 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 348
TspRI CASTG 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 255, 272
XapI RAATTY 1 cut(s) 278
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.