Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004260

Physical Location & Seq

Genomic Coordinates Forward (+)

12357715 .. 12361099

Gene Structure 3385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG098900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCCGAGGCTATGGCAGCTAGATTGGCTGCAGCACTTGCACTGACAGACGAAGCGGTGATTGAGTTTGGGGAGGCCGGAGCAACGGCTGATGCAGCGTCAGGTTTTTACTTGGCTGTTGGGAGTATGTTGGCGCCTAGGGCTGAGGATGATGCCGGATTGCCCAAAGAGTTGGCGGCGGTGTGGGGCTTGTGTGATCGCCTTTCGATCATGAAGGTTGATAGTGACCGATTCCAATTCCGGGACTGTGTGTGTGATCAGTTTCTGATTAAGAAAACTGATGGTGGTTTGATGCCAGGAATGGCGGGGATTGTATTGGGTGGCCCGGTGACACAAGAGGTGGTTAGGAAAGAGACAGCGAAGGGGGTTCTGCCGAAGACCTCTGGAGTTGCTGCGACACCAACAACTTCAGTGCTAGGGGTGACGTCAACTGATGGTATGCCTAATCTCATGGATATTGTAGGCAGGTCTTTGGAGATGTTGAAGGGCATTGCTCCATTTCCCATTCAGTCTGGTGCTCCATTGAATTTACCGGGGGTTCCCATGGCCTTACAGGTGGCACAAGTGAGTGGGGTCAAGCGTGCACCATCTGGTGTGCAAGTTCGTCCAGCTTCTGTGTTCATCACAGCCATGTCAGTGATCTGCTTCACAGCGTCAGCTTATGCCGGGTTCTCGGAGGTGAGAGGAAAGCACCTGGAGTATTCCAAGTTTTGGAAGAATAATAGCAATCAATCCATTTCTCAAAAATCAAAGCAAATTAACATATCTGGTAGAAGAGGCATGCAAATAACTTATACTCCCGCATTTCTTGCTAGTCTCACATCCTTGGTGTTCGTTCCCGGCCCGTTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

284

Amino Acids

29.8

Weight (kDa)

8.88

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004260)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007646 RLG00000008043 RLG00000008044 RLG00000019654 RLG00000023898 RLG00000033256 RLG00000033669
rosa_multiflora	Rmu_sc0001544.1_g000023 Rmu_sc0006181.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093260
rosa_samantha	Rh1BG212600 Rh2AG404300 Rh2BG397500 Rh3AG108400 Rh5AG213700 Rh5BG212800 Rh5CG236000 Rh5CG236100 Rh5DG217200 Rh5DG217300 Rh6AG116800 Rh6AG116900 Rh6AG509900 Rh6BG110900 Rh6CG108500 Rh6DG098900 Rh6DG207600 Rh6DG510800 Rh7AG206200 Rh7BG210100 Rh7CG183200 Rh7DG213400
rosa_wichuraiana	Rw5G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	428
Acc36I	ACCTGC	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	711
AciI	CCGC	5 cut(s)	56, 176, 179, 305, 801
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	393
AcyI	GRCGYC	2 cut(s)	134, 425
AfiI	CCNNNNNNNGG	2 cut(s)	241, 711
AgsI	TTSAA	2 cut(s)	484, 526
AjnI	CCWGG	2 cut(s)	295, 693
AluBI	AGCT	3 cut(s)	20, 611, 659
AluI	AGCT	3 cut(s)	20, 611, 659
Alw21I	GWGCWC	2 cut(s)	520, 586
Alw26I	GTCTC	2 cut(s)	347, 821
Alw44I	GTGCAC	1 cut(s)	582
AlwNI	CAGNNNCTG	2 cut(s)	265, 614
AoxI	GGCC	5 cut(s)	3, 75, 322, 546, 841
ApaLI	GTGCAC	1 cut(s)	582
ApeKI	GCWGC	5 cut(s)	17, 29, 32, 95, 392
ApoI	RAATTY	1 cut(s)	526
AspA2I	CCTAGG	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	323, 842
AsuC2I	CCSGG	5 cut(s)	242, 326, 534, 667, 840
AsuHPI	GGTGA	4 cut(s)	70, 340, 433, 691
AvrII	CCTAGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	2 cut(s)	520, 586
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	5 cut(s)	16, 29, 44, 107, 379
BccI	CCATC	3 cut(s)	275, 428, 595
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	2 cut(s)	297, 695
BclI	TGATCA	1 cut(s)	256
BcnI	CCSGG	5 cut(s)	242, 326, 534, 667, 840
BcoDI	GTCTC	2 cut(s)	347, 821
BfaI	CTAG	4 cut(s)	21, 138, 416, 813
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	137
BfuAI	ACCTGC	1 cut(s)	456
BisI	GCNGC	6 cut(s)	18, 30, 33, 96, 177, 393
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	6 cut(s)	19, 31, 34, 97, 178, 394
Bme1390I	CCNGG	7 cut(s)	242, 297, 326, 534, 667, 695, 840
BmgT120I	GGNCC	2 cut(s)	323, 842
BmiI	GGNNCC	2 cut(s)	135, 540
BmrFI	CCNGG	7 cut(s)	242, 297, 326, 534, 667, 695, 840
BmsI	GCATC	3 cut(s)	82, 142, 282
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	2 cut(s)	405, 716
Bpu10I	CCTNAGC	1 cut(s)	144
BpuMI	CCSGG	5 cut(s)	242, 326, 534, 667, 840
BsaHI	GRCGYC	2 cut(s)	134, 425
BsaJI	CCNNGG	5 cut(s)	6, 137, 533, 543, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	781, 811
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 711
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	297, 695
BseDI	CCNNGG	5 cut(s)	6, 137, 533, 543, 825
BseGI	GGATG	2 cut(s)	154, 821
BseLI	CCNNNNNNNGG	2 cut(s)	241, 711
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	5 cut(s)	16, 29, 44, 107, 379
BshFI	GGCC	5 cut(s)	5, 77, 324, 548, 843
BshNI	GGYRCC	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	520, 586
BsiSI	CCGG	7 cut(s)	78, 156, 241, 326, 533, 666, 840
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	241, 711
BsmAI	GTCTC	2 cut(s)	347, 821
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	5 cut(s)	5, 77, 324, 548, 843
Bsp1286I	GDGCHC	2 cut(s)	520, 586
Bsp143I	GATC	4 cut(s)	196, 207, 256, 639
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	5 cut(s)	56, 176, 179, 305, 801
BspANI	GGCC	5 cut(s)	5, 77, 324, 548, 843
BspCNI	CTCAG	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	135, 540
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	456
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	489
BssECI	CCNNGG	5 cut(s)	6, 137, 533, 543, 825
BssMI	GATC	4 cut(s)	196, 207, 256, 639
BssNI	GRCGYC	2 cut(s)	134, 425
BssT1I	CCWWGG	3 cut(s)	137, 543, 825
Bst2UI	CCWGG	2 cut(s)	297, 695
Bst4CI	ACNGT	2 cut(s)	248, 852
Bst6I	CTCTTC	1 cut(s)	769
BstACI	GRCGYC	2 cut(s)	134, 425
BstAPI	GCANNNNNTGC	2 cut(s)	38, 809
BstC8I	GCNNGC	2 cut(s)	582, 782
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	543
BstF5I	GGATG	2 cut(s)	154, 821
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	199, 210, 259, 642
BstMAI	GTCTC	2 cut(s)	347, 821
BstMBI	GATC	4 cut(s)	196, 207, 256, 639
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 26, 38, 95, 140, 809
BstNI	CCWGG	2 cut(s)	297, 695
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	7 cut(s)	240, 295, 324, 532, 665, 693, 838
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	586
BstV1I	GCAGC	5 cut(s)	16, 29, 44, 107, 379
BstV2I	GAAGAC	1 cut(s)	383
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuRI	GGCC	5 cut(s)	5, 77, 324, 548, 843
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	154, 821
BtsIMutI	CAGTG	3 cut(s)	41, 417, 642
BveI	ACCTGC	1 cut(s)	456
Cac8I	GCNNGC	2 cut(s)	582, 782
CaiI	CAGNNNCTG	2 cut(s)	265, 614
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	323, 842
CseI	GACGC	2 cut(s)	87, 642
CviAII	CATG	5 cut(s)	211, 451, 544, 631, 781
DdeI	CTNAG	1 cut(s)	144
DinI	GGCGCC	1 cut(s)	135
DpnI	GATC	4 cut(s)	198, 209, 258, 641
DpnII	GATC	4 cut(s)	196, 207, 256, 639
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	769
EarI	CTCTTC	1 cut(s)	769
Eco130I	CCWWGG	3 cut(s)	137, 543, 825
Eco57I	CTGAAG	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	295, 693
EcoT14I	CCWWGG	3 cut(s)	137, 543, 825
EgeI	GGCGCC	1 cut(s)	135
EheI	GGCGCC	1 cut(s)	135
ErhI	CCWWGG	3 cut(s)	137, 543, 825
FaeI	CATG	5 cut(s)	214, 454, 547, 634, 784
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	5 cut(s)	210, 450, 543, 630, 780
FauI	CCCGC	2 cut(s)	298, 808
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	6 cut(s)	18, 30, 33, 96, 177, 393
FokI	GGATG	2 cut(s)	161, 808
Fsp4HI	GCNGC	6 cut(s)	18, 30, 33, 96, 177, 393
FspBI	CTAG	4 cut(s)	21, 138, 416, 813
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	6 cut(s)	18, 30, 33, 96, 177, 393
GsuI	CTGGAG	2 cut(s)	405, 716
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	5 cut(s)	5, 77, 324, 548, 843
HapII	CCGG	7 cut(s)	78, 156, 241, 326, 533, 666, 840
HgaI	GACGC	2 cut(s)	87, 642
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	2 cut(s)	134, 425
Hin1II	CATG	5 cut(s)	214, 454, 547, 634, 784
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	7 cut(s)	78, 156, 241, 326, 533, 666, 840
HphI	GGTGA	4 cut(s)	70, 340, 433, 691
Hpy166II	GTNNAC	2 cut(s)	429, 584
Hpy188I	TCNGA	2 cut(s)	267, 676
Hpy188III	TCNNGA	2 cut(s)	211, 384
Hpy8I	GTNNAC	2 cut(s)	429, 584
HpyAV	CCTTC	3 cut(s)	208, 355, 478
HpyCH4III	ACNGT	2 cut(s)	248, 852
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	6 cut(s)	32, 41, 95, 584, 598, 784
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 26, 38, 95, 140, 809
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	425
Hsp92I	GRCGYC	2 cut(s)	134, 425
Hsp92II	CATG	5 cut(s)	214, 454, 547, 634, 784
HspAI	GCGC	1 cut(s)	134
KasI	GGCGCC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	196, 207, 256, 639
LmnI	GCTCC	3 cut(s)	80, 499, 523
Lsp1109I	GCAGC	5 cut(s)	16, 29, 44, 107, 379
LweI	GCATC	3 cut(s)	82, 142, 282
MaeI	CTAG	4 cut(s)	21, 138, 416, 813
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	4 cut(s)	224, 328, 421, 846
MalI	GATC	4 cut(s)	198, 209, 258, 641
MboI	GATC	4 cut(s)	196, 207, 256, 639
MboII	GAAGA	3 cut(s)	388, 727, 786
MhlI	GDGCHC	2 cut(s)	520, 586
MluCI	AATT	3 cut(s)	236, 526, 756
Mly113I	GGCGCC	1 cut(s)	134
MnlI	CCTC	7 cut(s)	67, 139, 331, 391, 670, 677, 770
MseI	TTAA	2 cut(s)	270, 759
MslI	CAYNNNNRTG	2 cut(s)	629, 635
MspI	CCGG	7 cut(s)	78, 156, 241, 326, 533, 666, 840
MspR9I	CCNGG	7 cut(s)	242, 297, 326, 534, 667, 695, 840
MvaI	CCWGG	2 cut(s)	297, 695
MwoI	GCNNNNNNNGC	6 cut(s)	17, 26, 38, 95, 140, 809
NarI	GGCGCC	1 cut(s)	134
NciI	CCSGG	5 cut(s)	242, 326, 534, 667, 840
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	4 cut(s)	196, 207, 256, 639
NlaIII	CATG	5 cut(s)	214, 454, 547, 634, 784
NlaIV	GGNNCC	2 cut(s)	135, 540
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	224, 328, 421
NspI	RCATGY	1 cut(s)	784
PaeI	GCATGC	1 cut(s)	784
PagI	TCATGA	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	231
PflMI	CCANNNNNTGG	1 cut(s)	711
PfoI	TCCNGGA	1 cut(s)	240
PkrI	GCNGC	6 cut(s)	19, 31, 34, 97, 178, 394
PluTI	GGCGCC	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	295, 693
PspGI	CCWGG	2 cut(s)	295, 693
PspN4I	GGNNCC	2 cut(s)	135, 540
PspPI	GGNCC	2 cut(s)	323, 842
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	2 cut(s)	265, 614
RseI	CAYNNNNRTG	2 cut(s)	629, 635
SaqAI	TTAA	2 cut(s)	270, 759
SatI	GCNGC	6 cut(s)	18, 30, 33, 96, 177, 393
Sau3AI	GATC	4 cut(s)	196, 207, 256, 639
Sau96I	GGNCC	2 cut(s)	323, 842
ScrFI	CCNGG	7 cut(s)	242, 297, 326, 534, 667, 695, 840
SduI	GDGCHC	2 cut(s)	520, 586
SfaNI	GCATC	3 cut(s)	82, 142, 282
SfcI	CTRYAG	1 cut(s)	30
SfoI	GGCGCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	629, 635
SphI	GCATGC	1 cut(s)	784
Sse9I	AATT	3 cut(s)	236, 526, 756
SsiI	CCGC	5 cut(s)	56, 176, 179, 305, 801
SspDI	GGCGCC	1 cut(s)	133
SspMI	CTAG	4 cut(s)	21, 138, 416, 813
StyD4I	CCNGG	7 cut(s)	240, 295, 324, 532, 665, 693, 838
StyI	CCWWGG	3 cut(s)	137, 543, 825
TaaI	ACNGT	2 cut(s)	248, 852
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	206
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	3 cut(s)	236, 526, 756
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	270, 759
Tru9I	TTAA	2 cut(s)	270, 759
TscAI	CASTG	3 cut(s)	48, 417, 642
TseFI	GTSAC	3 cut(s)	224, 328, 421
TseI	GCWGC	5 cut(s)	17, 29, 32, 95, 392
Tsp45I	GTSAC	3 cut(s)	224, 328, 421
TspDTI	ATGAA	2 cut(s)	227, 610
TspRI	CASTG	3 cut(s)	48, 417, 642
Van91I	CCANNNNNTGG	1 cut(s)	711
VneI	GTGCAC	1 cut(s)	582
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	784
XmaJI	CCTAGG	1 cut(s)	137
XspI	CTAG	4 cut(s)	21, 138, 416, 813
ZraI	GACGTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.