Rh7AG206200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004260
Physical Location & Seq
Forward (+)
18867290 .. 18867967
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG206200.1

Sequence Viewer

Length: 678 bp
ATGACAGGAACTACAGGGCTGGTATTGGGGGGTCAGGTGACTCCGACAGTGACTAGGAAAGAGCCGTCTAAGGTGATCCTGTCAGAGACTCCTAGGTGCAGTGCTGGTGTTACGGTGACACCTACATCTACACCAATTATGTTAGGGCAGATGACAACAGATGGAGGGCCAAATCTCGTGGATATTGTTGGCCGATCTATGGAGATGCTGAAGGGGATACCAAGCTGGAATGCTCCATGTCCCATTCAATCTGGAGCCGCACTGACTATACCGGTGGTTCCCAAAGCTATAGAAGCATCACAAGTACGTGGTGTGAAGCGCTTAGCTTTTTCTGTGCAAGCTCGTCCAGGTAAGAAGGCTAAACTGCGTTATGATTCTTCTGCGATAATGTGCTTGGATGTGGAGGAGGGTTTTGGCTTACCTAATGATAATGGGAAAGTGAAACTCTCACCTTTGAAGACTAAGAGGGGTAGGCCTAAAGGGTCCAAGAATCAGTTAGGACCAAAGGTTTGTAGTAAGAGAGTGGTTCGAAAGATTACTATTGTTGAGACTGCTGATGGACAGGTGGGCAATGACTTGTCTGTGATGGGCAAAGAAACCCCATCGGGGGAGAAAGTGGTTTCTGAGGAGGTATATGTGAGTCCTCTCCTGATGGGGATGGCTTCGGGTACAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

23.59

Weight (kDa)

9.75

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 258
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 230
AfaI GTAC 2 cut(s) 306, 670
AfeI AGCGCT 1 cut(s) 320
AfiI CCNNNNNNNGG 3 cut(s) 199, 606, 607
AgeI ACCGGT 1 cut(s) 271
AgsI TTSAA 2 cut(s) 248, 457
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 5 cut(s) 225, 287, 326, 341, 674
AluI AGCT 5 cut(s) 225, 287, 326, 341, 674
Alw26I GTCTC 2 cut(s) 80, 542
AlwI GGATC 1 cut(s) 70
Aor51HI AGCGCT 1 cut(s) 320
AoxI GGCC 3 cut(s) 167, 190, 473
ArsI GACNNNNNNTTYG 2 cut(s) 492, 524
AsiGI ACCGGT 1 cut(s) 271
AspA2I CCTAGG 1 cut(s) 92
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 3 cut(s) 167, 483, 500
AsuHPI GGTGA 4 cut(s) 49, 85, 127, 441
AsuII TTCGAA 1 cut(s) 529
AvaII GGWCC 2 cut(s) 483, 500
AvrII CCTAGG 1 cut(s) 92
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 464
BccI CCATC 6 cut(s) 155, 551, 580, 610, 646, 652
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 348
BciVI GTATCC 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 80, 542
BfaI CTAG 2 cut(s) 54, 93
BfmI CTRYAG 2 cut(s) 12, 288
BfoI RGCGCY 1 cut(s) 322
BfuI GTATCC 1 cut(s) 210
BisI GCNGC 1 cut(s) 258
BlnI CCTAGG 1 cut(s) 92
BlpI GCTNAGC 1 cut(s) 322
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 2 cut(s) 483, 500
BmgT120I GGNCC 3 cut(s) 167, 483, 500
BmiI GGNNCC 3 cut(s) 256, 279, 484
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 195, 305
BpiI GAAGAC 1 cut(s) 464
BpmI CTGGAG 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 322
Bpu14I TTCGAA 1 cut(s) 529
BsaAI YACGTR 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 606, 607
Bse118I RCCGGY 1 cut(s) 271
Bse3DI GCAATG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 403, 663
BseLI CCNNNNNNNGG 3 cut(s) 199, 606, 607
BseMI GCAATG 1 cut(s) 577
BseMII CTCAG 1 cut(s) 615
BseRI GAGGAG 2 cut(s) 419, 641
BsgI GTGCAG 1 cut(s) 118
BshFI GGCC 3 cut(s) 169, 192, 475
BshTI ACCGGT 1 cut(s) 271
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 3 cut(s) 199, 606, 607
BsmAI GTCTC 2 cut(s) 80, 542
BsmFI GGGAC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 3 cut(s) 169, 192, 475
Bsp119I TTCGAA 1 cut(s) 529
Bsp143I GATC 2 cut(s) 75, 194
Bsp1720I GCTNAGC 1 cut(s) 322
BspACI CCGC 1 cut(s) 258
BspANI GGCC 3 cut(s) 169, 192, 475
BspCNI CTCAG 1 cut(s) 616
BspLI GGNNCC 3 cut(s) 256, 279, 484
BspPI GGATC 1 cut(s) 70
BspT104I TTCGAA 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 577
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 2 cut(s) 75, 194
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 92
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 49, 115
BstBAI YACGTR 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 4 cut(s) 69, 322, 462, 624
BstF5I GGATG 2 cut(s) 403, 663
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 2 cut(s) 78, 197
BstMAI GTCTC 2 cut(s) 80, 542
BstMBI GATC 2 cut(s) 75, 194
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 2 cut(s) 12, 288
BstV2I GAAGAC 1 cut(s) 464
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 3 cut(s) 169, 192, 475
BtsCI GGATG 2 cut(s) 403, 663
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 3 cut(s) 54, 106, 260
Cac8I GCNNGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 3 cut(s) 167, 483, 500
Csp6I GTAC 2 cut(s) 305, 669
CspAI ACCGGT 1 cut(s) 271
CspCI CAANNNNNGTGG 2 cut(s) 159, 194
CviAII CATG 1 cut(s) 237
CviQI GTAC 2 cut(s) 305, 669
DdeI CTNAG 4 cut(s) 69, 322, 462, 624
DpnI GATC 2 cut(s) 77, 196
DpnII GATC 2 cut(s) 75, 194
EaeI YGGCCR 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 92
Eco147I AGGCCT 1 cut(s) 475
Eco47I GGWCC 2 cut(s) 483, 500
Eco47III AGCGCT 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 1 cut(s) 240
FaiI YATR 8 cut(s) 140, 200, 238, 269, 290, 372, 634, 636
FaqI GGGAC 1 cut(s) 225
FatI CATG 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 2 cut(s) 410, 670
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 2 cut(s) 54, 93
GlaI GCGC 1 cut(s) 320
GluI GCNGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 273
HaeII RGCGCY 1 cut(s) 322
HaeIII GGCC 3 cut(s) 169, 192, 475
HapII CCGG 1 cut(s) 272
HhaI GCGC 1 cut(s) 321
Hin1II CATG 1 cut(s) 240
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HinfI GANTC 5 cut(s) 40, 88, 374, 490, 640
HpaII CCGG 1 cut(s) 272
HphI GGTGA 4 cut(s) 49, 85, 127, 441
Hpy188I TCNGA 3 cut(s) 45, 85, 625
Hpy188III TCNNGA 2 cut(s) 252, 649
HpyAV CCTTC 2 cut(s) 205, 349
HpyCH4III ACNGT 2 cut(s) 49, 115
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 99, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 4 cut(s) 69, 322, 462, 624
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 1 cut(s) 240
HspAI GCGC 1 cut(s) 319
Kzo9I GATC 2 cut(s) 75, 194
LmnI GCTCC 2 cut(s) 238, 254
LweI GCATC 2 cut(s) 195, 305
MaeI CTAG 2 cut(s) 54, 93
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 4 cut(s) 37, 49, 109, 115
MalI GATC 2 cut(s) 77, 196
MboI GATC 2 cut(s) 75, 194
MboII GAAGA 2 cut(s) 369, 469
MluCI AATT 1 cut(s) 135
MlyI GAGTC 3 cut(s) 34, 82, 649
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 7 cut(s) 158, 397, 400, 459, 619, 622, 654
MseI TTAA 1 cut(s) 676
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 2 cut(s) 75, 194
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 3 cut(s) 256, 279, 484
NmuCI GTSAC 3 cut(s) 37, 49, 115
NspV TTCGAA 1 cut(s) 529
PceI AGGCCT 1 cut(s) 475
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 374, 490
PinAI ACCGGT 1 cut(s) 271
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 3 cut(s) 34, 82, 648
PpsI GAGTC 3 cut(s) 34, 82, 648
Ppu21I YACGTR 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 3 cut(s) 256, 279, 484
PspPI GGNCC 3 cut(s) 167, 483, 500
RsaI GTAC 2 cut(s) 306, 670
RsaNI GTAC 2 cut(s) 305, 669
SaqAI TTAA 1 cut(s) 676
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 75, 194
Sau96I GGNCC 3 cut(s) 167, 483, 500
SchI GAGTC 3 cut(s) 34, 82, 649
ScrFI CCNGG 1 cut(s) 348
SfaNI GCATC 2 cut(s) 195, 305
SfcI CTRYAG 2 cut(s) 12, 288
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 2 cut(s) 483, 500
Sse9I AATT 1 cut(s) 135
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 1 cut(s) 258
SspMI CTAG 2 cut(s) 54, 93
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 49, 115
TaiI ACGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 529
TasI AATT 1 cut(s) 135
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 2 cut(s) 374, 490
Tru1I TTAA 1 cut(s) 676
Tru9I TTAA 1 cut(s) 676
TscAI CASTG 3 cut(s) 54, 106, 267
TseFI GTSAC 3 cut(s) 37, 49, 115
Tsp45I GTSAC 3 cut(s) 37, 49, 115
TspRI CASTG 3 cut(s) 54, 106, 267
VpaK11BI GGWCC 2 cut(s) 483, 500
XmaJI CCTAGG 1 cut(s) 92
XspI CTAG 2 cut(s) 54, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.