Rh5CG236000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004260
Physical Location & Seq
Forward (+)
24570827 .. 24571169
343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG236000.1

Sequence Viewer

Length: 252 bp
ATGGCCAAGGCGGAGGTGGAATTGCACTATGAAAAGTTTCTGCTTAAGAAATCTGGTGTTAAGGTGATGGCAAGAATGCCGGGGATGGTGATGGAGGGTCCAGTAGCTCAGGGGGAGGCCAGGAAGGAGCTGAGGAAGGTGGTTCTGCCAAAGACCCCTAGAGGTAGTTCTGGTGCTGCTGCGACACTAACACCACCAGAGATAGGGCTGACATCAGCTGACGTCTTTGGAGATGTTGAAGGGTATACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.86

Weight (kDa)

9.05

Isoelectric Point (pI)

28.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 225
AccI GTMKAC 1 cut(s) 245
AciI CCGC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 203
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 3 cut(s) 107, 130, 218
AluI AGCT 3 cut(s) 107, 130, 218
AoxI GGCC 2 cut(s) 3, 117
ApeKI GCWGC 2 cut(s) 176, 179
Asp700I GAANNNNTTC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 76, 100
AvaII GGWCC 1 cut(s) 98
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 163, 166
BccI CCATC 3 cut(s) 61, 79, 85
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 1 cut(s) 81
BfaI CTAG 2 cut(s) 159, 250
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 2 cut(s) 177, 180
BlsI GCNGC 2 cut(s) 178, 181
Bme1390I CCNGG 2 cut(s) 81, 121
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 2 cut(s) 81, 121
Bpu10I CCTNAGC 2 cut(s) 108, 131
BpuMI CCSGG 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 6, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 6, 80
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 122, 122
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 163, 166
BshFI GGCC 2 cut(s) 5, 119
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 203
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 2 cut(s) 5, 119
BspACI CCGC 1 cut(s) 11
BspANI GGCC 2 cut(s) 5, 119
BspCNI CTCAG 2 cut(s) 121, 123
BspLI GGNNCC 1 cut(s) 99
BspTI CTTAAG 1 cut(s) 44
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 6, 80
BssNAI GTATAC 1 cut(s) 246
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 222
BstAFI CTTAAG 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 108, 131
BstF5I GGATG 1 cut(s) 90
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 79, 119
BstV1I GCAGC 2 cut(s) 163, 166
BstZ17I GTATAC 1 cut(s) 246
BsuRI GGCC 2 cut(s) 5, 119
BtsCI GGATG 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 98
CviJI RGCY 6 cut(s) 5, 107, 119, 130, 208, 218
CviKI_1 RGCY 6 cut(s) 5, 107, 119, 130, 208, 218
DdeI CTNAG 2 cut(s) 108, 131
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaiI YATR 2 cut(s) 30, 246
FblI GTMKAC 1 cut(s) 245
Fnu4HI GCNGC 2 cut(s) 177, 180
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 2 cut(s) 177, 180
FspBI CTAG 2 cut(s) 159, 250
GluI GCNGC 2 cut(s) 177, 180
HaeIII GGCC 2 cut(s) 5, 119
HapII CCGG 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 222
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 76, 100
Hpy166II GTNNAC 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 3 cut(s) 118, 130, 233
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 108, 131
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 8 cut(s) 39, 93, 95, 106, 114, 133, 156, 210
Lsp1109I GCAGC 2 cut(s) 163, 166
MaeI CTAG 2 cut(s) 159, 250
MaeII ACGT 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 7, 88, 109, 126, 155
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 36
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 45, 60
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 218
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 81, 121
Mva1269I GAATGC 1 cut(s) 81
MvaI CCWGG 1 cut(s) 121
NciI CCSGG 1 cut(s) 81
NlaIV GGNNCC 1 cut(s) 99
PctI GAATGC 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 36
PkrI GCNGC 2 cut(s) 178, 181
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 218
SaqAI TTAA 2 cut(s) 45, 60
SatI GCNGC 2 cut(s) 177, 180
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 81, 121
SetI ASST 9 cut(s) 18, 66, 109, 132, 141, 166, 220, 225, 251
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 20
SsiI CCGC 1 cut(s) 11
SspMI CTAG 2 cut(s) 159, 250
StyD4I CCNGG 2 cut(s) 79, 119
StyI CCWWGG 1 cut(s) 6
TaiI ACGT 1 cut(s) 225
TasI AATT 1 cut(s) 20
Tru1I TTAA 2 cut(s) 45, 60
Tru9I TTAA 2 cut(s) 45, 60
TseI GCWGC 2 cut(s) 176, 179
TspDTI ATGAA 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 2 cut(s) 159, 250
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.