Rh6AG116800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004260
Physical Location & Seq
Forward (+)
17566118 .. 17567136
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG116800.1

Sequence Viewer

Length: 342 bp
ATGGCCGAGGCTATGGCGGCTAGATTGGCTACAGCACTTGCACTGACAGACGAAGCGATGGTTGAGTTTGGGGAGGCTGGAGCAACGGCTGATGCAGCGTCGGGTTTTTACTTGGCCGTTGGGAGTATGTTGGCGCCTAGGGCTGAGGATGATGCTGGATTGCCCAAAGAGCTGGCGGCGGTGTGGGGCCTGTCTTTGGAGATGTTGAAGGGCATGCCAAGATGGAATGCTCCATTTCCCATTCAGTCTGGTGCTCCATTGAATCTACCTGGGGTTCCCATGGCCTTACAGGTGGCACAAGTGAGTGGGGGCGTGCACCATCTGGTGTGCAAGTTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.64

Weight (kDa)

4.74

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AciI CCGC 3 cut(s) 17, 176, 179
AcoI YGGCCR 2 cut(s) 3, 114
AcyI GRCGYC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 208, 262
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 2 cut(s) 256, 318
Alw44I GTGCAC 1 cut(s) 314
AoxI GGCC 4 cut(s) 3, 114, 187, 282
ApaLI GTGCAC 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 95
AspA2I CCTAGG 1 cut(s) 137
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 187
AvrII CCTAGG 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 318
BanI GGYRCC 1 cut(s) 133
Bbv12I GWGCWC 2 cut(s) 256, 318
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 107
BccI CCATC 3 cut(s) 52, 216, 327
BceAI ACGGC 2 cut(s) 101, 102
BciT130I CCWGG 1 cut(s) 270
BfaI CTAG 3 cut(s) 21, 138, 340
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 3 cut(s) 18, 96, 177
BlnI CCTAGG 1 cut(s) 137
BlsI GCNGC 3 cut(s) 19, 97, 178
Bme1390I CCNGG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 3 cut(s) 135, 188, 276
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 82, 142
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 4 cut(s) 6, 137, 269, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 4 cut(s) 6, 137, 269, 279
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 1 cut(s) 107
BshFI GGCC 4 cut(s) 5, 116, 189, 284
BshNI GGYRCC 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 256, 318
BslI CCNNNNNNNGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 4 cut(s) 5, 116, 189, 284
Bsp1286I GDGCHC 2 cut(s) 256, 318
Bsp19I CCATGG 1 cut(s) 279
BspACI CCGC 3 cut(s) 17, 176, 179
BspANI GGCC 4 cut(s) 5, 116, 189, 284
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 3 cut(s) 135, 188, 276
BspT107I GGYRCC 1 cut(s) 133
BssECI CCNNGG 4 cut(s) 6, 137, 269, 279
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 2 cut(s) 137, 279
Bst2UI CCWGG 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 134
BstC8I GCNNGC 3 cut(s) 174, 215, 314
BstDEI CTNAG 1 cut(s) 144
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstMWI GCNNNNNNNGC 5 cut(s) 17, 26, 95, 140, 169
BstNI CCWGG 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuRI GGCC 4 cut(s) 5, 116, 189, 284
BtgI CCRYGG 1 cut(s) 279
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 3 cut(s) 174, 215, 314
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 1 cut(s) 87
CviAII CATG 2 cut(s) 214, 280
DdeI CTNAG 1 cut(s) 144
DinI GGCGCC 1 cut(s) 135
EaeI YGGCCR 2 cut(s) 3, 114
Eco130I CCWWGG 2 cut(s) 137, 279
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 137, 279
EgeI GGCGCC 1 cut(s) 135
EheI GGCGCC 1 cut(s) 135
ErhI CCWWGG 2 cut(s) 137, 279
FaeI CATG 2 cut(s) 217, 283
FaiI YATR 4 cut(s) 14, 128, 215, 281
FatI CATG 2 cut(s) 213, 279
Fnu4HI GCNGC 3 cut(s) 18, 96, 177
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 18, 96, 177
FspBI CTAG 3 cut(s) 21, 138, 340
GlaI GCGC 1 cut(s) 135
GluI GCNGC 3 cut(s) 18, 96, 177
GsuI CTGGAG 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 4 cut(s) 5, 116, 189, 284
HgaI GACGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 2 cut(s) 217, 283
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 202
HpyCH4V TGCA 4 cut(s) 41, 95, 316, 330
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 26, 95, 140, 169
HpyF3I CTNAG 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 2 cut(s) 217, 283
HspAI GCGC 1 cut(s) 134
KasI GGCGCC 1 cut(s) 133
LmnI GCTCC 3 cut(s) 80, 235, 259
LpnPI CCDG 9 cut(s) 63, 141, 158, 203, 234, 255, 275, 282, 308
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 2 cut(s) 82, 142
MaeI CTAG 3 cut(s) 21, 138, 340
MhlI GDGCHC 2 cut(s) 256, 318
Mly113I GGCGCC 1 cut(s) 134
MnlI CCTC 2 cut(s) 67, 139
MspR9I CCNGG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 5 cut(s) 17, 26, 95, 140, 169
NarI GGCGCC 1 cut(s) 134
NcoI CCATGG 1 cut(s) 279
NlaIII CATG 2 cut(s) 217, 283
NlaIV GGNNCC 3 cut(s) 135, 188, 276
NmeAIII GCCGAG 1 cut(s) 31
NspI RCATGY 1 cut(s) 217
PaeI GCATGC 1 cut(s) 217
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 3 cut(s) 19, 97, 178
PluTI GGCGCC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 3 cut(s) 135, 188, 276
PspPI GGNCC 1 cut(s) 187
SatI GCNGC 3 cut(s) 18, 96, 177
Sau96I GGNCC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 2 cut(s) 256, 318
SetI ASST 3 cut(s) 174, 271, 294
SfaNI GCATC 2 cut(s) 82, 142
SfcI CTRYAG 1 cut(s) 30
SfoI GGCGCC 1 cut(s) 135
SphI GCATGC 1 cut(s) 217
SsiI CCGC 3 cut(s) 17, 176, 179
SspDI GGCGCC 1 cut(s) 133
SspMI CTAG 3 cut(s) 21, 138, 340
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 2 cut(s) 137, 279
TauI GCSGC 2 cut(s) 20, 179
TfiI GAWTC 1 cut(s) 262
TscAI CASTG 1 cut(s) 48
TseI GCWGC 1 cut(s) 95
TspRI CASTG 1 cut(s) 48
VneI GTGCAC 1 cut(s) 314
XceI RCATGY 1 cut(s) 217
XmaJI CCTAGG 1 cut(s) 137
XspI CTAG 3 cut(s) 21, 138, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.