Rh6DG207600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004260
Physical Location & Seq
Forward (+)
36881625 .. 36882194
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG207600.1

Sequence Viewer

Length: 570 bp
ATGAAAAGCGGGGGTGTGATGACAGGAACTACAGGGCTGGTATTGGGGGGTCAGGTGACTCCGGCGGTAGCTAGGAAAGAGCCGTCTAAGGTGATCCTATCAGAGACTCCTAGGTGCAGCGCTGGTGTTACGGTGACACCTACATCTACACTAATTCTGTTAGGGCAGATGGCAACAGATGGAGGGCCAAATTTCATGGATATTGTTGGTCGGTCCATGGAGATGCTGAAGGGGATACCAAGCTGGAATGCTCCATGTCCCATTCAATCTGGAGCCCCACTGACTATACCGGTGGCTCCCAAAGCTATAGAAGCAGCACAAGAAAGTGGTGTGAAGCGCTCAGCTTTTTCTGTGCAAGCTCGTCCAGGTAAGAAGGCTAAACTGCGTTCTGATTCTTCTGCGTTAATGTGCTTGGATGTGGAGGAGGGTTTTGGCTTACCTAATGATAATGGGAAAGTGAAACTCTCACCTTTGAAGACTAAGAGGGGTAGGCCTAAAGGGTCCAAGAATCAGTTAGGACCAAAGGTTCGTAGTAAGAGAGTGGTTCGGAAGATTAATTACTATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

19.89

Weight (kDa)

10.18

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 65
AclWI GGATC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 248
AfeI AGCGCT 2 cut(s) 121, 338
AgeI ACCGGT 1 cut(s) 289
AgsI TTSAA 2 cut(s) 266, 475
AjnI CCWGG 1 cut(s) 364
AloI GAACNNNNNNTCC 2 cut(s) 510, 542
AluBI AGCT 5 cut(s) 71, 243, 305, 344, 359
AluI AGCT 5 cut(s) 71, 243, 305, 344, 359
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 88
Aor51HI AGCGCT 2 cut(s) 121, 338
AoxI GGCC 2 cut(s) 185, 491
ApeKI GCWGC 2 cut(s) 117, 314
ApoI RAATTY 1 cut(s) 190
ArsI GACNNNNNNTTYG 2 cut(s) 510, 542
AseI ATTAAT 1 cut(s) 555
AsiGI ACCGGT 1 cut(s) 289
AspA2I CCTAGG 1 cut(s) 110
AspLEI GCGC 2 cut(s) 122, 339
AspS9I GGNCC 4 cut(s) 185, 213, 501, 518
AsuHPI GGTGA 4 cut(s) 67, 103, 145, 459
AvaII GGWCC 3 cut(s) 213, 501, 518
AvrII CCTAGG 1 cut(s) 110
BanII GRGCYC 1 cut(s) 277
BarI GAAGNNNNNNTAC 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 482
BbvI GCAGC 2 cut(s) 129, 326
BccI CCATC 2 cut(s) 163, 173
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 366
BciVI GTATCC 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 2 cut(s) 72, 111
BfmI CTRYAG 2 cut(s) 30, 306
BfoI RGCGCY 2 cut(s) 123, 340
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 2 cut(s) 118, 315
BlnI CCTAGG 1 cut(s) 110
BlpI GCTNAGC 1 cut(s) 340
BlsI GCNGC 2 cut(s) 119, 316
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 3 cut(s) 213, 501, 518
BmgT120I GGNCC 4 cut(s) 185, 213, 501, 518
BmiI GGNNCC 3 cut(s) 274, 297, 502
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 110, 216
BsaWI WCCGGW 1 cut(s) 289
Bse118I RCCGGY 1 cut(s) 289
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 110, 216
BseGI GGATG 1 cut(s) 421
BseMII CTCAG 1 cut(s) 354
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 2 cut(s) 129, 326
BsgI GTGCAG 1 cut(s) 136
BshFI GGCC 2 cut(s) 187, 493
BshTI ACCGGT 1 cut(s) 289
BsiSI CCGG 2 cut(s) 62, 290
BslFI GGGAC 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 2 cut(s) 187, 493
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 93
Bsp1720I GCTNAGC 1 cut(s) 340
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 2 cut(s) 9, 65
BspANI GGCC 2 cut(s) 187, 493
BspCNI CTCAG 1 cut(s) 353
BspLI GGNNCC 3 cut(s) 274, 297, 502
BspPI GGATC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 110, 216
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 2 cut(s) 110, 216
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 3 cut(s) 87, 340, 480
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 421
BstH2I RGCGCY 2 cut(s) 123, 340
BstHHI GCGC 2 cut(s) 122, 339
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 302, 311
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 2 cut(s) 30, 306
BstV1I GCAGC 2 cut(s) 129, 326
BstV2I GAAGAC 1 cut(s) 482
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 187, 493
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 357
CfoI GCGC 2 cut(s) 122, 339
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 4 cut(s) 185, 213, 501, 518
CspAI ACCGGT 1 cut(s) 289
CviAII CATG 3 cut(s) 196, 217, 255
DdeI CTNAG 3 cut(s) 87, 340, 480
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 110, 216
Eco147I AGGCCT 1 cut(s) 493
Eco24I GRGCYC 1 cut(s) 277
Eco47I GGWCC 3 cut(s) 213, 501, 518
Eco47III AGCGCT 2 cut(s) 121, 338
Eco57I CTGAAG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 364
EcoT14I CCWWGG 2 cut(s) 110, 216
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 2 cut(s) 110, 216
FaeI CATG 3 cut(s) 199, 220, 258
FaiI YATR 5 cut(s) 197, 218, 256, 287, 308
FaqI GGGAC 1 cut(s) 243
FatI CATG 3 cut(s) 195, 216, 254
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 2 cut(s) 118, 315
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 118, 315
FspBI CTAG 2 cut(s) 72, 111
GlaI GCGC 2 cut(s) 121, 338
GluI GCNGC 2 cut(s) 118, 315
GsuI CTGGAG 1 cut(s) 291
HaeII RGCGCY 2 cut(s) 123, 340
HaeIII GGCC 2 cut(s) 187, 493
HapII CCGG 2 cut(s) 62, 290
HhaI GCGC 2 cut(s) 122, 339
Hin1II CATG 3 cut(s) 199, 220, 258
Hin6I GCGC 2 cut(s) 120, 337
HinP1I GCGC 2 cut(s) 120, 337
HinfI GANTC 4 cut(s) 58, 106, 392, 508
HpaII CCGG 2 cut(s) 62, 290
HphI GGTGA 4 cut(s) 67, 103, 145, 459
Hpy188I TCNGA 3 cut(s) 103, 391, 549
Hpy188III TCNNGA 1 cut(s) 270
HpyAV CCTTC 2 cut(s) 223, 367
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 117, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 311
HpyF3I CTNAG 3 cut(s) 87, 340, 480
Hsp92II CATG 3 cut(s) 199, 220, 258
HspAI GCGC 2 cut(s) 120, 337
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 3 cut(s) 256, 272, 301
Lsp1109I GCAGC 2 cut(s) 129, 326
LweI GCATC 1 cut(s) 213
MaeI CTAG 2 cut(s) 72, 111
MaeIII GTNAC 3 cut(s) 55, 127, 133
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 3 cut(s) 387, 487, 562
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 3 cut(s) 153, 190, 556
MlyI GAGTC 2 cut(s) 52, 100
MnlI CCTC 4 cut(s) 176, 415, 418, 477
MseI TTAA 2 cut(s) 404, 555
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 2 cut(s) 62, 290
MspR9I CCNGG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 302, 311
NcoI CCATGG 1 cut(s) 216
NdeII GATC 1 cut(s) 93
NlaIII CATG 3 cut(s) 199, 220, 258
NlaIV GGNNCC 3 cut(s) 274, 297, 502
NmuCI GTSAC 2 cut(s) 55, 133
PceI AGGCCT 1 cut(s) 493
PctI GAATGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 392, 508
PinAI ACCGGT 1 cut(s) 289
PkrI GCNGC 2 cut(s) 119, 316
PleI GAGTC 2 cut(s) 52, 100
PpsI GAGTC 2 cut(s) 52, 100
PshBI ATTAAT 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 3 cut(s) 274, 297, 502
PspPI GGNCC 4 cut(s) 185, 213, 501, 518
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 2 cut(s) 404, 555
SatI GCNGC 2 cut(s) 118, 315
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 4 cut(s) 185, 213, 501, 518
SchI GAGTC 2 cut(s) 52, 100
ScrFI CCNGG 1 cut(s) 366
SduI GDGCHC 1 cut(s) 277
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 2 cut(s) 30, 306
SinI GGWCC 3 cut(s) 213, 501, 518
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 3 cut(s) 153, 190, 556
SseBI AGGCCT 1 cut(s) 493
SsiI CCGC 2 cut(s) 9, 65
SspMI CTAG 2 cut(s) 72, 111
StuI AGGCCT 1 cut(s) 493
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 2 cut(s) 110, 216
TaaI ACNGT 1 cut(s) 133
TaqII GACCGA 1 cut(s) 201
TasI AATT 3 cut(s) 153, 190, 556
TfiI GAWTC 2 cut(s) 392, 508
Tru1I TTAA 2 cut(s) 404, 555
Tru9I TTAA 2 cut(s) 404, 555
TscAI CASTG 1 cut(s) 285
TseFI GTSAC 2 cut(s) 55, 133
TseI GCWGC 2 cut(s) 117, 314
Tsp45I GTSAC 2 cut(s) 55, 133
TspDTI ATGAA 2 cut(s) 17, 184
TspRI CASTG 1 cut(s) 285
VpaK11BI GGWCC 3 cut(s) 213, 501, 518
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 1 cut(s) 190
XmaJI CCTAGG 1 cut(s) 110
XspI CTAG 2 cut(s) 72, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.