Rh3AG108400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
9151555 .. 9151851
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG108400.1

Sequence Viewer

Length: 297 bp
ATGTGCTTGGATGTGGAGGAGGGTTTTGGCTTACCTAATGATAATGGGAAAGTGAAACTCTCACCTTTGAAGACTAAGAGGGGTAGGCCTATAGGGTCCAAGAATCAGTTAGGACCAAATGTTCATAGTAAGAGAGTGGTTCGGAATATTACTATTGCTGAGACTGTTGAAGGACAGGTGGGCAATGACTTGTCTGTGGTTGGCGAAGAAACTCCATCGGGGGAGAAAGTGGTTTCTGAGGAGGTATATGTGAGTCCTCTCCTGATGGGGATGGCTTCGGGTACAGCTCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.4

Weight (kDa)

6.57

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 283
AgsI TTSAA 2 cut(s) 70, 170
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 155
AoxI GGCC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 96, 113
AsuHPI GGTGA 1 cut(s) 54
AvaII GGWCC 2 cut(s) 96, 113
BbsI GAAGAC 1 cut(s) 77
BccI CCATC 3 cut(s) 223, 259, 265
BcoDI GTCTC 1 cut(s) 155
BfmI CTRYAG 1 cut(s) 90
Bme18I GGWCC 2 cut(s) 96, 113
BmgT120I GGNCC 2 cut(s) 96, 113
BmiI GGNNCC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 190
BseGI GGATG 2 cut(s) 16, 276
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 150, 228
BseRI GAGGAG 2 cut(s) 32, 254
BshFI GGCC 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 88
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 2 cut(s) 151, 229
BspLI GGNNCC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 166
BstDEI CTNAG 3 cut(s) 75, 159, 237
BstF5I GGATG 2 cut(s) 16, 276
BstMAI GTCTC 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 16, 276
Cfr13I GGNCC 2 cut(s) 96, 113
Csp6I GTAC 1 cut(s) 282
CviJI RGCY 4 cut(s) 30, 88, 275, 287
CviKI_1 RGCY 4 cut(s) 30, 88, 275, 287
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 3 cut(s) 75, 159, 237
Eco147I AGGCCT 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 96, 113
FaiI YATR 4 cut(s) 92, 126, 247, 249
FokI GGATG 2 cut(s) 23, 283
HaeIII GGCC 1 cut(s) 88
HinfI GANTC 2 cut(s) 103, 253
HphI GGTGA 1 cut(s) 54
Hpy188I TCNGA 2 cut(s) 144, 238
Hpy188III TCNNGA 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 166
HpyF3I CTNAG 3 cut(s) 75, 159, 237
LpnPI CCDG 2 cut(s) 161, 275
MboII GAAGA 2 cut(s) 82, 218
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 6 cut(s) 10, 13, 72, 232, 235, 267
NlaIV GGNNCC 1 cut(s) 97
PceI AGGCCT 1 cut(s) 88
PfeI GAWTC 1 cut(s) 103
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 96, 113
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
Sau96I GGNCC 2 cut(s) 96, 113
SchI GAGTC 1 cut(s) 262
SetI ASST 5 cut(s) 37, 67, 180, 246, 289
SfcI CTRYAG 1 cut(s) 90
SgeI CNNG 7 cut(s) 19, 112, 188, 202, 231, 274, 291
SinI GGWCC 2 cut(s) 96, 113
SseBI AGGCCT 1 cut(s) 88
SspI AATATT 1 cut(s) 148
StuI AGGCCT 1 cut(s) 88
TaaI ACNGT 1 cut(s) 166
TfiI GAWTC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 96, 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.