Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004260

Physical Location & Seq

Genomic Coordinates Forward (+)

12439617 .. 12442300

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG108500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCGGGGATTGTATTGGGTGGCCCGGTGACACAAGAGGTGGTTAGGAAAGAGACAGCGAAGGGGGTTCTGCCGAAGACCTCTGGAGTTGCTGCGACACCAACAACTTCAGTGCTAGGGGTGACGTCAACTGATGCTTCTGTGTTCATCACAGCCATGTCAGTGATCTGCTTCACAGCGTCAGCTTATGCCGGGTTCTCGGAGGTGAGAGGAAAGCACCTGGAGTATTCCAAGTTTTGGAAGAATAATAGCAATCAATCCATTTCTCAAAAATCAAAGCAAATTAACATATCTGGTAGAAGAGGCATGCAAATAACTTATACTCCCGCATTTCTTGCTAGTCTCACATCCTTGGTGTTCGTTCCCGGCCCGTTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006702 GO:0007154 GO:0007267 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008202 GO:0008207 GO:0008209 GO:0008406 GO:0008584 GO:0008610 GO:0009058 GO:0009917 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0016627 GO:0017144 GO:0022414 GO:0023052 GO:0030283 GO:0030539 GO:0030540 GO:0031984 GO:0032501 GO:0032502 GO:0033764 GO:0033765 GO:0034754 GO:0042175 GO:0042180 GO:0042181 GO:0042445 GO:0042446 GO:0042448 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045137 GO:0046546 GO:0046660 GO:0046661 GO:0048513 GO:0048608 GO:0048731 GO:0048806 GO:0048856 GO:0055114 GO:0061370 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01110 ko01212 map00062 map00140 map01040 map01110 map01212

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

126

Amino Acids

13.34

Weight (kDa)

10.08

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004260)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007646 RLG00000008043 RLG00000008044 RLG00000019654 RLG00000023898 RLG00000033256 RLG00000033669
rosa_multiflora	Rmu_sc0001544.1_g000023 Rmu_sc0006181.1_g000012
rosa_roxburghii	Rroxscaffold_2G00093260
rosa_samantha	Rh1BG212600 Rh2AG404300 Rh2BG397500 Rh3AG108400 Rh5AG213700 Rh5BG212800 Rh5CG236000 Rh5CG236100 Rh5DG217200 Rh5DG217300 Rh6AG116800 Rh6AG116900 Rh6AG509900 Rh6BG110900 Rh6CG108500 Rh6DG098900 Rh6DG207600 Rh6DG510800 Rh7AG206200 Rh7BG210100 Rh7CG183200 Rh7DG213400
rosa_wichuraiana	Rw5G019530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	237
AciI	CCGC	2 cut(s)	5, 327
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	237
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	47, 347
AoxI	GGCC	2 cut(s)	22, 367
ApeKI	GCWGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	23, 368
AsuC2I	CCSGG	3 cut(s)	26, 193, 366
AsuHPI	GGTGA	3 cut(s)	40, 133, 217
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	3 cut(s)	26, 193, 366
BcoDI	GTCTC	2 cut(s)	47, 347
BfaI	CTAG	2 cut(s)	116, 339
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	4 cut(s)	26, 193, 221, 366
BmgT120I	GGNCC	2 cut(s)	23, 368
BmrFI	CCNGG	4 cut(s)	26, 193, 221, 366
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	2 cut(s)	105, 242
BpuMI	CCSGG	3 cut(s)	26, 193, 366
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	24, 369
BsiSI	CCGG	3 cut(s)	26, 192, 366
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	47, 347
BsnI	GGCC	2 cut(s)	24, 369
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	2 cut(s)	5, 327
BspANI	GGCC	2 cut(s)	24, 369
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	378
Bst6I	CTCTTC	1 cut(s)	295
BstACI	GRCGYC	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	347
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	2 cut(s)	47, 347
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	4 cut(s)	24, 191, 219, 364
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	83
BsuRI	GGCC	2 cut(s)	24, 369
BtsCI	GGATG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	117, 168
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	23, 368
CseI	GACGC	1 cut(s)	168
CviAII	CATG	2 cut(s)	157, 307
CviJI	RGCY	4 cut(s)	24, 155, 185, 369
CviKI_1	RGCY	4 cut(s)	24, 155, 185, 369
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	2 cut(s)	160, 310
FaiI	YATR	5 cut(s)	158, 189, 290, 308, 321
FatI	CATG	2 cut(s)	156, 306
FauI	CCCGC	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	116, 339
GluI	GCNGC	1 cut(s)	93
GsuI	CTGGAG	2 cut(s)	105, 242
HaeIII	GGCC	2 cut(s)	24, 369
HapII	CCGG	3 cut(s)	26, 192, 366
HgaI	GACGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	160, 310
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HpaII	CCGG	3 cut(s)	26, 192, 366
HphI	GGTGA	3 cut(s)	40, 133, 217
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	84
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	160, 310
Kzo9I	GATC	1 cut(s)	165
LpnPI	CCDG	6 cut(s)	39, 69, 205, 206, 233, 279
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	116, 339
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	3 cut(s)	28, 121, 372
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	3 cut(s)	88, 253, 312
MluCI	AATT	1 cut(s)	282
MnlI	CCTC	5 cut(s)	31, 91, 196, 203, 296
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	155, 161
MspI	CCGG	3 cut(s)	26, 192, 366
MspR9I	CCNGG	4 cut(s)	26, 193, 221, 366
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	3 cut(s)	26, 193, 366
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	2 cut(s)	160, 310
NmuCI	GTSAC	2 cut(s)	28, 121
NspI	RCATGY	1 cut(s)	310
PaeI	GCATGC	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	23, 368
RseI	CAYNNNNRTG	2 cut(s)	155, 161
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	2 cut(s)	23, 368
ScrFI	CCNGG	4 cut(s)	26, 193, 221, 366
SetI	ASST	6 cut(s)	42, 83, 128, 187, 207, 222
SfaNI	GCATC	1 cut(s)	124
SmiMI	CAYNNNNRTG	2 cut(s)	155, 161
SphI	GCATGC	1 cut(s)	310
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	2 cut(s)	5, 327
SspMI	CTAG	2 cut(s)	116, 339
StyD4I	CCNGG	4 cut(s)	24, 191, 219, 364
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	378
TaiI	ACGT	1 cut(s)	128
TasI	AATT	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	117, 168
TseFI	GTSAC	2 cut(s)	28, 121
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	2 cut(s)	28, 121
TspDTI	ATGAA	1 cut(s)	136
TspRI	CASTG	2 cut(s)	117, 168
Van91I	CCANNNNNTGG	1 cut(s)	237
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	2 cut(s)	116, 339
ZraI	GACGTC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.