Rh6BG110900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004260
Physical Location & Seq
Forward (+)
17259048 .. 17259653
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG110900.1

Sequence Viewer

Length: 606 bp
ATGGCGGGGATTGTATTGGGTGGCCCGGTGACACAAGAGGTGGTTAGGAAAGAGACAGCGAAGGGGGTTCTGCCGAAGACCTCTGGAGTTGCTGCGACACCAACAACTTCAGTGCTAGGGGTGACGTCAACTGATGGTATGCCTAATCTCATGGATATTGTAGGTAGGTCTTTGGAGATGTTGAAGGGCATGCCAAGATGGAATGCTCCATTTCCCATTCAGTCTGGTGCTCCATTGAATTTACCGGGGGTTCCCATGGCCTTACAGGTGGCACAAGTGAGTGGGGTCAAGCGTGCACCATCTGGTGTGCAAGTTCGTCCAGGTAAGAAGGCTAAATTGCGTACTCATTCTTCTGCCCTAGTTTACTTGGATGTGGAAGAGGGATTTGGACTACCTAATGATAATGGGATAGTGAAAATCTCCCCTTTGAAGACTAGGAGGGGGAGGCCAAAAAGGGCTAAAAACAAATTGGGATCGAAGGTCCGTAACAAGAGAGTGGCCAGGAAGATCACCAATGTCGGGATTGCTAAGAACAGGTGGGGATTGAGTTGCCTGCAATGGAAGAAGAAGTTTCTACGAGAGGTGAAGTGGTTACTGAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.82

Weight (kDa)

11.57

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 128
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 1 cut(s) 498
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 1 cut(s) 519
AgsI TTSAA 3 cut(s) 184, 238, 430
AjnI CCWGG 2 cut(s) 319, 500
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
Alw21I GWGCWC 2 cut(s) 232, 298
Alw26I GTCTC 1 cut(s) 47
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 1 cut(s) 481
AoxI GGCC 4 cut(s) 22, 258, 446, 498
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 23, 481
AsuC2I CCSGG 2 cut(s) 26, 246
AsuHPI GGTGA 4 cut(s) 40, 133, 502, 595
AvaII GGWCC 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 500
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
BbsI GAAGAC 2 cut(s) 83, 437
Bbv12I GWGCWC 2 cut(s) 232, 298
BbvI GCAGC 1 cut(s) 79
BccI CCATC 3 cut(s) 128, 192, 307
BciT130I CCWGG 2 cut(s) 321, 502
BcnI CCSGG 2 cut(s) 26, 246
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 3 cut(s) 116, 359, 435
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 4 cut(s) 26, 246, 321, 502
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 23, 481
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 4 cut(s) 26, 246, 321, 502
BpiI GAAGAC 2 cut(s) 83, 437
BpmI CTGGAG 1 cut(s) 105
BpuMI CCSGG 2 cut(s) 26, 246
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 245, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 563
BseBI CCWGG 2 cut(s) 321, 502
BseDI CCNNGG 2 cut(s) 245, 255
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 519
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 1 cut(s) 587
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 1 cut(s) 79
BshFI GGCC 4 cut(s) 24, 260, 448, 500
BsiHKAI GWGCWC 2 cut(s) 232, 298
BsiSI CCGG 2 cut(s) 26, 245
BslI CCNNNNNNNGG 1 cut(s) 519
BsmAI GTCTC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 4 cut(s) 24, 260, 448, 500
Bsp1286I GDGCHC 2 cut(s) 232, 298
Bsp143I GATC 2 cut(s) 473, 507
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 1 cut(s) 5
BspANI GGCC 4 cut(s) 24, 260, 448, 500
BspCNI CTCAG 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 245, 255
BssMI GATC 2 cut(s) 473, 507
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 321, 502
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 125
BstC8I GCNNGC 3 cut(s) 191, 294, 554
BstDEI CTNAG 2 cut(s) 528, 596
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 2 cut(s) 476, 510
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 2 cut(s) 473, 507
BstNI CCWGG 2 cut(s) 321, 502
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 4 cut(s) 24, 244, 319, 500
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 79
BstV2I GAAGAC 2 cut(s) 83, 437
BsuRI GGCC 4 cut(s) 24, 260, 448, 500
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 3 cut(s) 191, 294, 554
Cfr13I GGNCC 2 cut(s) 23, 481
Csp6I GTAC 1 cut(s) 342
CviAII CATG 3 cut(s) 151, 190, 256
CviJI RGCY 6 cut(s) 24, 260, 332, 448, 458, 500
CviKI_1 RGCY 6 cut(s) 24, 260, 332, 448, 458, 500
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 2 cut(s) 528, 596
DpnI GATC 2 cut(s) 475, 509
DpnII GATC 2 cut(s) 473, 507
EaeI YGGCCR 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 481
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 2 cut(s) 319, 500
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 3 cut(s) 154, 193, 259
FaiI YATR 4 cut(s) 140, 152, 191, 257
FatI CATG 3 cut(s) 150, 189, 255
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 3 cut(s) 116, 359, 435
GluI GCNGC 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 4 cut(s) 24, 260, 448, 500
HapII CCGG 2 cut(s) 26, 245
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 3 cut(s) 154, 193, 259
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HpaII CCGG 2 cut(s) 26, 245
HphI GGTGA 4 cut(s) 40, 133, 502, 595
Hpy166II GTNNAC 3 cut(s) 129, 296, 364
Hpy188III TCNNGA 2 cut(s) 84, 520
Hpy8I GTNNAC 3 cut(s) 129, 296, 364
HpyAV CCTTC 4 cut(s) 55, 178, 322, 472
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 296, 310, 556
HpyF3I CTNAG 2 cut(s) 528, 596
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 3 cut(s) 154, 193, 259
Kzo9I GATC 2 cut(s) 473, 507
LmnI GCTCC 2 cut(s) 211, 235
Lsp1109I GCAGC 1 cut(s) 79
MaeI CTAG 3 cut(s) 116, 359, 435
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 4 cut(s) 28, 121, 485, 591
MalI GATC 2 cut(s) 475, 509
MboI GATC 2 cut(s) 473, 507
MboII GAAGA 7 cut(s) 88, 342, 389, 442, 517, 574, 577
MhlI GDGCHC 2 cut(s) 232, 298
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 3 cut(s) 238, 335, 467
MluNI TGGCCA 1 cut(s) 500
MnlI CCTC 8 cut(s) 31, 91, 373, 432, 438, 574, 591, 594
Mox20I TGGCCA 1 cut(s) 500
MscI TGGCCA 1 cut(s) 500
Msp20I TGGCCA 1 cut(s) 500
MspI CCGG 2 cut(s) 26, 245
MspR9I CCNGG 4 cut(s) 26, 246, 321, 502
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 2 cut(s) 321, 502
NciI CCSGG 2 cut(s) 26, 246
NcoI CCATGG 1 cut(s) 255
NdeII GATC 2 cut(s) 473, 507
NlaIII CATG 3 cut(s) 154, 193, 259
NlaIV GGNNCC 1 cut(s) 252
NmuCI GTSAC 2 cut(s) 28, 121
NspI RCATGY 1 cut(s) 193
PaeI GCATGC 1 cut(s) 193
PctI GAATGC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 319, 500
PspGI CCWGG 2 cut(s) 319, 500
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 23, 481
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 2 cut(s) 473, 507
Sau96I GGNCC 2 cut(s) 23, 481
ScrFI CCNGG 4 cut(s) 26, 246, 321, 502
SduI GDGCHC 2 cut(s) 232, 298
SinI GGWCC 1 cut(s) 481
SphI GCATGC 1 cut(s) 193
Sse9I AATT 3 cut(s) 238, 335, 467
SsiI CCGC 1 cut(s) 5
SspMI CTAG 3 cut(s) 116, 359, 435
StyD4I CCNGG 4 cut(s) 24, 244, 319, 500
StyI CCWWGG 1 cut(s) 255
TaiI ACGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 476
TasI AATT 3 cut(s) 238, 335, 467
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 2 cut(s) 28, 121
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 2 cut(s) 28, 121
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 1 cut(s) 117
VneI GTGCAC 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 193
XspI CTAG 3 cut(s) 116, 359, 435
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.