RLG00000010592

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002267
Physical Location & Seq
Reverse (-)
2835636 .. 2836907
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010592

Sequence Viewer

Length: 966 bp
ATGGACCAATCTTGTACATCAAGTTCGGCTACCGCCCTGTCGTCATTGTATCCTCTCCTTCTGCAGCTGAGGAATGCTTCACCAAAAATGACCGCCAACCGCCCCGGGCTGCTTGCCGGAAAACACCTAGGATGTAACTACACCATCCTTGTCTGGCCCTCTTATGGCTCTCACTGGTGCAACTTGAGGCGCATAGCTTCCCTTGAGCTCTTATCATCTCATCGCCTTCAGATGTTTCATGGAATAAGTGCAGATGAATTTTACATTGTGGACATGAAGTCGACGTTTTTTCAGCTGACTCTTAATGTTATCATGAGGATGATTGCTGGAAAAAGATACTATGGTGAAGACAGGACAGGATTGGAGGAAGCTAAGAGGTTTGAGCAGATTGTGGTAGAGACATTTCAATTGAGTGGAGCTACCAACATTGGAGATTTTGTACCAGTTTTGAAATATGTTGAAGCAAATGGGCTTGAAAGAAAGTTGTTGATATTGCAAAAGAAGAGGGACAAGTTCATGCAAGATTTGATTGAAGAACATAGAAAAGCGCAGAGTGGCTCTGTTTCTGAACAGAGGAGCAAGACCATGGTGGATGTGTTGCTTACACAACAAGAAACTGAACCTGAATACTACACTGATGAAATCATAAGAGGCCTGATGCAAGTGATGTTATCAGCAGGAACAGAAACCTCAGCTGGAACCATGGAATGGGGCTTTTCACTTTTGCTCAACAACCCAGAAGCCCTAGCAAAAGCACAGACAGAAATTGATGTCCAAATTGGGCAAACCAGGCTCATAGAGGAAGCAGACCTTGCCAACCTTCCCTATCTCCATGGCATCATAAACGAGACCCTCAGAATGTACCCCAGCAGCCCCACTTCTAGTACCCCATGCCATGACTCATCACAAGAGTGTACACTGGGAGGCTACCATGTCCCTAAAGAACAGAGGAAGAGATTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

322

Amino Acids

36.24

Weight (kDa)

5.96

Isoelectric Point (pI)

55.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 89 - 316 3.8e-40 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 708
AccI GTMKAC 1 cut(s) 281
AciI CCGC 3 cut(s) 33, 93, 100
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 5 cut(s) 16, 441, 863, 886, 916
AfiI CCNNNNNNNGG 2 cut(s) 164, 708
AgsI TTSAA 5 cut(s) 407, 451, 461, 476, 533
AhdI GACNNNNNGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 788
AleI CACNNNNGTG 1 cut(s) 910
AluBI AGCT 7 cut(s) 67, 197, 208, 295, 371, 419, 695
AluI AGCT 7 cut(s) 67, 197, 208, 295, 371, 419, 695
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 2 cut(s) 392, 842
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 2 cut(s) 155, 652
ApeKI GCWGC 3 cut(s) 64, 109, 870
ApoI RAATTY 1 cut(s) 257
AspA2I CCTAGG 1 cut(s) 127
AspLEI GCGC 2 cut(s) 192, 550
AspS9I GGNCC 2 cut(s) 4, 156
AsuC2I CCSGG 2 cut(s) 105, 106
AsuHPI GGTGA 2 cut(s) 72, 356
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 127
BaeI ACNNNNGTAYC 2 cut(s) 328, 361
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 210
BbvCI CCTCAGC 2 cut(s) 68, 691
BbvI GCAGC 3 cut(s) 76, 96, 882
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 790
BciVI GTATCC 1 cut(s) 60
BcnI CCSGG 2 cut(s) 105, 106
BcoDI GTCTC 2 cut(s) 392, 842
BfaI CTAG 3 cut(s) 128, 746, 882
BfmI CTRYAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 60
BisI GCNGC 3 cut(s) 65, 110, 871
BlnI CCTAGG 1 cut(s) 127
BlsI GCNGC 3 cut(s) 66, 111, 872
Bme1390I CCNGG 3 cut(s) 105, 106, 790
Bme18I GGWCC 1 cut(s) 4
BmeRI GACNNNNNGTC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 4, 156
BmiI GGNNCC 1 cut(s) 700
BmrFI CCNGG 3 cut(s) 105, 106, 790
BmrI ACTGGG 1 cut(s) 929
BmsI GCATC 2 cut(s) 648, 846
BmuI ACTGGG 1 cut(s) 929
BpiI GAAGAC 1 cut(s) 354
Bpu10I CCTNAGC 2 cut(s) 68, 691
BpuEI CTTGAG 2 cut(s) 205, 224
BpuMI CCSGG 2 cut(s) 105, 106
BsaI GGTCTC 1 cut(s) 842
BsaJI CCNNGG 6 cut(s) 103, 104, 127, 585, 702, 832
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 708
Bse1I ACTGG 3 cut(s) 179, 443, 924
BseBI CCWGG 1 cut(s) 790
BseDI CCNNGG 6 cut(s) 103, 104, 127, 585, 702, 832
BseGI GGATG 4 cut(s) 137, 144, 324, 598
BseLI CCNNNNNNNGG 2 cut(s) 164, 708
BseMII CTCAG 3 cut(s) 59, 705, 868
BseNI ACTGG 3 cut(s) 179, 443, 924
BseRI GAGGAG 1 cut(s) 589
BseXI GCAGC 3 cut(s) 76, 96, 882
BseYI CCCAGC 1 cut(s) 866
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 2 cut(s) 157, 654
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 2 cut(s) 105, 117
BslFI GGGAC 2 cut(s) 521, 920
BslI CCNNNNNNNGG 2 cut(s) 164, 708
BsmAI GTCTC 2 cut(s) 392, 842
BsmFI GGGAC 2 cut(s) 521, 920
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 2 cut(s) 157, 654
Bso31I GGTCTC 1 cut(s) 842
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 210
Bsp1407I TGTACA 2 cut(s) 14, 914
Bsp19I CCATGG 3 cut(s) 585, 702, 832
BspACI CCGC 3 cut(s) 33, 93, 100
BspANI GGCC 2 cut(s) 157, 654
BspCNI CTCAG 3 cut(s) 60, 704, 867
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 700
BspMAI CTGCAG 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 842
BsrGI TGTACA 2 cut(s) 14, 914
BsrI ACTGG 3 cut(s) 179, 443, 924
BssECI CCNNGG 6 cut(s) 103, 104, 127, 585, 702, 832
BssT1I CCWWGG 4 cut(s) 127, 585, 702, 832
Bst2UI CCWGG 1 cut(s) 790
Bst6I CTCTTC 2 cut(s) 497, 947
BstAPI GCANNNNNTGC 1 cut(s) 812
BstAUI TGTACA 2 cut(s) 14, 914
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 4 cut(s) 68, 372, 691, 854
BstDSI CCRYGG 3 cut(s) 585, 702, 832
BstF5I GGATG 4 cut(s) 137, 144, 324, 598
BstHHI GCGC 2 cut(s) 192, 550
BstMAI GTCTC 2 cut(s) 392, 842
BstMWI GCNNNNNNNGC 2 cut(s) 790, 812
BstNI CCWGG 1 cut(s) 790
BstSCI CCNGG 3 cut(s) 103, 104, 788
BstSFI CTRYAG 1 cut(s) 62
BstV1I GCAGC 3 cut(s) 76, 96, 882
BstV2I GAAGAC 1 cut(s) 354
BsuI GTATCC 1 cut(s) 60
BsuRI GGCC 2 cut(s) 157, 654
BtgI CCRYGG 3 cut(s) 585, 702, 832
BtgZI GCGATG 1 cut(s) 206
BtsCI GGATG 4 cut(s) 137, 144, 324, 598
BtsIMutI CAGTG 3 cut(s) 172, 633, 917
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 312
CfoI GCGC 2 cut(s) 192, 550
Cfr13I GGNCC 2 cut(s) 4, 156
Cfr9I CCCGGG 1 cut(s) 104
Csp6I GTAC 5 cut(s) 15, 440, 862, 885, 915
CviQI GTAC 5 cut(s) 15, 440, 862, 885, 915
DdeI CTNAG 4 cut(s) 68, 372, 691, 854
DriI GACNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 497, 947
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 2 cut(s) 497, 947
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 4 cut(s) 127, 585, 702, 832
Eco147I AGGCCT 1 cut(s) 654
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 842
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 788
EcoT14I CCWWGG 4 cut(s) 127, 585, 702, 832
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 4 cut(s) 127, 585, 702, 832
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 2 cut(s) 521, 920
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 3 cut(s) 65, 110, 871
FokI GGATG 4 cut(s) 131, 144, 331, 605
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 3 cut(s) 65, 110, 871
FspBI CTAG 3 cut(s) 128, 746, 882
GlaI GCGC 2 cut(s) 191, 549
GluI GCNGC 3 cut(s) 65, 110, 871
GsaI CCCAGC 1 cut(s) 870
HaeIII GGCC 2 cut(s) 157, 654
HapII CCGG 2 cut(s) 105, 117
HhaI GCGC 2 cut(s) 192, 550
Hin6I GCGC 2 cut(s) 190, 548
HinP1I GCGC 2 cut(s) 190, 548
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 2 cut(s) 298, 899
HpaII CCGG 2 cut(s) 105, 117
HphI GGTGA 2 cut(s) 72, 356
Hpy166II GTNNAC 4 cut(s) 271, 282, 915, 917
Hpy188I TCNGA 3 cut(s) 231, 568, 857
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 4 cut(s) 271, 282, 915, 917
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 3 cut(s) 68, 236, 830
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 6 cut(s) 64, 180, 251, 496, 520, 661
HpyF10VI GCNNNNNNNGC 2 cut(s) 790, 812
HpyF3I CTNAG 4 cut(s) 68, 372, 691, 854
HpySE526I ACGT 1 cut(s) 284
HspAI GCGC 2 cut(s) 190, 548
LmnI GCTCC 2 cut(s) 416, 576
Lsp1109I GCAGC 3 cut(s) 76, 96, 882
LweI GCATC 2 cut(s) 648, 846
MaeI CTAG 3 cut(s) 128, 746, 882
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 134
MboII GAAGA 4 cut(s) 359, 514, 545, 964
MfeI CAATTG 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 4 cut(s) 257, 407, 765, 777
MlyI GAGTC 2 cut(s) 292, 893
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 2 cut(s) 317, 910
MspA1I CMGCKG 3 cut(s) 67, 295, 695
MspI CCGG 2 cut(s) 105, 117
MspR9I CCNGG 3 cut(s) 105, 106, 790
MunI CAATTG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 790
MwoI GCNNNNNNNGC 2 cut(s) 790, 812
NciI CCSGG 2 cut(s) 105, 106
NcoI CCATGG 3 cut(s) 585, 702, 832
NlaIV GGNNCC 1 cut(s) 700
OliI CACNNNNGTG 1 cut(s) 910
PagI TCATGA 1 cut(s) 312
PceI AGGCCT 1 cut(s) 654
PctI GAATGC 1 cut(s) 79
PflMI CCANNNNNTGG 1 cut(s) 708
PkrI GCNGC 3 cut(s) 66, 111, 872
PleI GAGTC 2 cut(s) 292, 893
PpsI GAGTC 2 cut(s) 292, 893
Psp124BI GAGCTC 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 788
PspFI CCCAGC 1 cut(s) 866
PspGI CCWGG 1 cut(s) 788
PspN4I GGNNCC 1 cut(s) 700
PspPI GGNCC 2 cut(s) 4, 156
PsrI GAACNNNNNNTAC 2 cut(s) 7, 39
PstI CTGCAG 1 cut(s) 66
PvuII CAGCTG 3 cut(s) 67, 295, 695
RsaI GTAC 5 cut(s) 16, 441, 863, 886, 916
RsaNI GTAC 5 cut(s) 15, 440, 862, 885, 915
RseI CAYNNNNRTG 2 cut(s) 317, 910
SacI GAGCTC 1 cut(s) 210
SalI GTCGAC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 65, 110, 871
Sau96I GGNCC 2 cut(s) 4, 156
SchI GAGTC 2 cut(s) 292, 893
ScrFI CCNGG 3 cut(s) 105, 106, 790
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 2 cut(s) 648, 846
SfcI CTRYAG 1 cut(s) 62
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 317, 910
SmlI CTYRAG 2 cut(s) 184, 203
SmoI CTYRAG 2 cut(s) 184, 203
Sse9I AATT 4 cut(s) 257, 407, 765, 777
SseBI AGGCCT 1 cut(s) 654
SsiI CCGC 3 cut(s) 33, 93, 100
SspMI CTAG 3 cut(s) 128, 746, 882
SstI GAGCTC 1 cut(s) 210
StuI AGGCCT 1 cut(s) 654
StyD4I CCNGG 3 cut(s) 103, 104, 788
StyI CCWWGG 4 cut(s) 127, 585, 702, 832
TaiI ACGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 281
TasI AATT 4 cut(s) 257, 407, 765, 777
TatI WGTACW 2 cut(s) 14, 914
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 3 cut(s) 179, 640, 924
TseI GCWGC 3 cut(s) 64, 109, 870
TspDTI ATGAA 5 cut(s) 227, 270, 290, 505, 654
TspMI CCCGGG 1 cut(s) 104
TspRI CASTG 3 cut(s) 179, 640, 924
Van91I CCANNNNNTGG 1 cut(s) 708
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 257
XmaI CCCGGG 1 cut(s) 104
XmaJI CCTAGG 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 3 cut(s) 128, 746, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.