Rmu_sc0034731.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034731.1
OG0002267
Physical Location & Seq
Forward (+)
484 .. 2083
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034731.1_g000001.1.cds

Sequence Viewer

Length: 1011 bp
atgccctggtccatctctaccctttataggccatctctacccttcataggccatctctacctcttccaaaaacccttacataaaacactagcaaaactctctgataaatatggtccaattatacacatcaaatttggctccagccctgtcattcttgtatcctccccatctgcagtcgaggaatgcttcacaaagcatgacgttgcctttgcaaaccgtccaaagctgcttgccggaaaataccttggttataactataccacagttacctgggcttcttatggctctcattggcgcaacttgagacgcatttcttcccttgaattattgtcatccaaccgccttcagatgcttcagggcatacgtgcagatgaagtcaggtcactcatttgccggctttttagagggtctaatggtggtgagtttcagagtttagagatgaagtcaacattttttcagctaactctcaatgttatgatgaggatggtagctgggaagagatactatggggaagatgtagcagatttggaggaagctaaaagatatggctcacggcctgttattcttgtatcctccccttctgcagctgaggaatgcttcaccaagcacgacgtcgcttttgcaaatcgtccaaagctgcttgctggcaaataccttggctataactataccactattagctgggcttcttatggctctcactggcgcaacttgagacgcatagcttccgttaaattattgtcatccaacagccttcagatgtttcatgttttgaactatgtgggagtaagtagacttgagaagaagttggtgatattgcagaagaagaaggataagttcctgcaagatttgatcaatcaacatagacaaaagcagagtgactctgcttctgaacagacgagcaagaccatggtggatgtcttgttgtcactgcaaggaactgaacctgaataccataccgatgaaatcataaggggcatgatgcatgtaagctatctaaccacacgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

336

Amino Acids

38.42

Weight (kDa)

9.75

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
AatII GACGTC 1 cut(s) 615
AccI GTMKAC 1 cut(s) 793
AciI CCGC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 3 cut(s) 329, 338, 740
AcyI GRCGYC 1 cut(s) 612
AfiI CCNNNNNNNGG 2 cut(s) 27, 47
AgsI TTSAA 2 cut(s) 323, 775
AjnI CCWGG 2 cut(s) 5, 269
AluBI AGCT 9 cut(s) 226, 460, 491, 536, 587, 637, 681, 725, 993
AluI AGCT 9 cut(s) 226, 460, 491, 536, 587, 637, 681, 725, 993
Alw26I GTCTC 2 cut(s) 298, 709
AoxI GGCC 3 cut(s) 29, 49, 554
ApeKI GCWGC 3 cut(s) 226, 584, 637
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 4 cut(s) 191, 223, 602, 634
AspLEI GCGC 2 cut(s) 297, 708
AspS9I GGNCC 2 cut(s) 9, 113
AsuHPI GGTGA 3 cut(s) 431, 592, 823
AvaII GGWCC 2 cut(s) 9, 113
BbvCI CCTCAGC 1 cut(s) 588
BbvI GCAGC 3 cut(s) 213, 596, 624
BccI CCATC 5 cut(s) 20, 40, 60, 175, 478
BceAI ACGGC 1 cut(s) 569
BciT130I CCWGG 2 cut(s) 7, 271
BciVI GTATCC 2 cut(s) 169, 580
BclI TGATCA 1 cut(s) 852
BcoDI GTCTC 2 cut(s) 298, 709
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 2 cut(s) 171, 582
BfuI GTATCC 2 cut(s) 169, 580
BisI GCNGC 3 cut(s) 227, 585, 638
BlsI GCNGC 3 cut(s) 228, 586, 639
Bme1390I CCNGG 2 cut(s) 7, 271
Bme18I GGWCC 2 cut(s) 9, 113
BmgT120I GGNCC 2 cut(s) 9, 113
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 2 cut(s) 7, 271
BmsI GCATC 2 cut(s) 339, 972
BpmI CTGGAG 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 588
BpuEI CTTGAG 3 cut(s) 322, 733, 818
BsaAI YACGTR 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 612
BsaJI CCNNGG 5 cut(s) 5, 244, 270, 655, 909
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 47
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 707
BseBI CCWGG 2 cut(s) 7, 271
BseDI CCNNGG 5 cut(s) 5, 244, 270, 655, 909
BseGI GGATG 4 cut(s) 332, 489, 743, 922
BseLI CCNNNNNNNGG 2 cut(s) 27, 47
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 1 cut(s) 707
BseXI GCAGC 3 cut(s) 213, 596, 624
BseYI CCCAGC 2 cut(s) 491, 681
BsgI GTGCAG 1 cut(s) 387
BshFI GGCC 3 cut(s) 31, 51, 556
BsiSI CCGG 2 cut(s) 234, 394
BslI CCNNNNNNNGG 2 cut(s) 27, 47
BsmAI GTCTC 2 cut(s) 298, 709
BsmBI CGTCTC 2 cut(s) 298, 709
BsmI GAATGC 2 cut(s) 188, 599
BsnI GGCC 3 cut(s) 31, 51, 556
Bsp143I GATC 1 cut(s) 852
Bsp19I CCATGG 1 cut(s) 909
BspACI CCGC 1 cut(s) 340
BspANI GGCC 3 cut(s) 31, 51, 556
BspCNI CTCAG 1 cut(s) 580
BspLI GGNNCC 1 cut(s) 139
BspMAI CTGCAG 2 cut(s) 175, 586
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 1 cut(s) 707
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 5 cut(s) 5, 244, 270, 655, 909
BssMI GATC 1 cut(s) 852
BssNI GRCGYC 1 cut(s) 612
BssT1I CCWWGG 3 cut(s) 244, 655, 909
Bst2UI CCWGG 2 cut(s) 7, 271
Bst4CI ACNGT 2 cut(s) 218, 265
Bst6I CTCTTC 2 cut(s) 68, 491
BstACI GRCGYC 1 cut(s) 612
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 4 cut(s) 231, 395, 642, 646
BstDEI CTNAG 1 cut(s) 588
BstDSI CCRYGG 1 cut(s) 909
BstF5I GGATG 4 cut(s) 332, 489, 743, 922
BstHHI GCGC 2 cut(s) 297, 708
BstKTI GATC 1 cut(s) 855
BstMAI GTCTC 2 cut(s) 298, 709
BstMBI GATC 1 cut(s) 852
BstNI CCWGG 2 cut(s) 7, 271
BstNSI RCATGY 1 cut(s) 989
BstSCI CCNGG 2 cut(s) 5, 269
BstSFI CTRYAG 2 cut(s) 171, 582
BstV1I GCAGC 3 cut(s) 213, 596, 624
BsuI GTATCC 2 cut(s) 169, 580
BsuRI GGCC 3 cut(s) 31, 51, 556
BtgI CCRYGG 1 cut(s) 909
BtsCI GGATG 4 cut(s) 332, 489, 743, 922
BtsI GCAGTG 1 cut(s) 929
BtsIMutI CAGTG 2 cut(s) 700, 929
Cac8I GCNNGC 4 cut(s) 231, 395, 642, 646
CfoI GCGC 2 cut(s) 297, 708
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 2 cut(s) 9, 113
CseI GACGC 2 cut(s) 315, 726
CviAII CATG 5 cut(s) 197, 767, 910, 979, 986
DdeI CTNAG 1 cut(s) 588
DpnI GATC 1 cut(s) 854
DpnII GATC 1 cut(s) 852
Eam1104I CTCTTC 2 cut(s) 68, 491
EarI CTCTTC 2 cut(s) 68, 491
Eco130I CCWWGG 3 cut(s) 244, 655, 909
Eco47I GGWCC 2 cut(s) 9, 113
Eco57I CTGAAG 3 cut(s) 329, 338, 740
EcoRII CCWGG 2 cut(s) 5, 269
EcoT14I CCWWGG 3 cut(s) 244, 655, 909
EcoT22I ATGCAT 1 cut(s) 987
ErhI CCWWGG 3 cut(s) 244, 655, 909
Esp3I CGTCTC 2 cut(s) 298, 709
FaeI CATG 5 cut(s) 200, 770, 913, 982, 989
FatI CATG 5 cut(s) 196, 766, 909, 978, 985
FbaI TGATCA 1 cut(s) 852
FblI GTMKAC 1 cut(s) 793
Fnu4HI GCNGC 3 cut(s) 227, 585, 638
FokI GGATG 4 cut(s) 319, 496, 730, 929
Fsp4HI GCNGC 3 cut(s) 227, 585, 638
FspBI CTAG 1 cut(s) 89
GlaI GCGC 2 cut(s) 296, 707
GluI GCNGC 3 cut(s) 227, 585, 638
GsaI CCCAGC 2 cut(s) 495, 685
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 3 cut(s) 31, 51, 556
HapII CCGG 2 cut(s) 234, 394
HgaI GACGC 2 cut(s) 315, 726
HhaI GCGC 2 cut(s) 297, 708
Hin1I GRCGYC 1 cut(s) 612
Hin1II CATG 5 cut(s) 200, 770, 913, 982, 989
Hin6I GCGC 2 cut(s) 295, 706
HinP1I GCGC 2 cut(s) 295, 706
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HinfI GANTC 1 cut(s) 881
HpaII CCGG 2 cut(s) 234, 394
HphI GGTGA 3 cut(s) 431, 592, 823
Hpy166II GTNNAC 2 cut(s) 447, 794
Hpy188I TCNGA 5 cut(s) 103, 348, 429, 759, 892
Hpy8I GTNNAC 2 cut(s) 447, 794
Hpy99I CGWCG 2 cut(s) 614, 617
HpyAV CCTTC 5 cut(s) 52, 353, 588, 764, 823
HpyCH4III ACNGT 2 cut(s) 218, 265
HpyCH4IV ACGT 3 cut(s) 201, 364, 612
HpyCH4V TGCA 9 cut(s) 173, 212, 368, 584, 623, 820, 844, 934, 985
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 3 cut(s) 201, 364, 612
Hsp92I GRCGYC 1 cut(s) 612
Hsp92II CATG 5 cut(s) 200, 770, 913, 982, 989
HspAI GCGC 2 cut(s) 295, 706
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 852
Kzo9I GATC 1 cut(s) 852
LmnI GCTCC 1 cut(s) 143
Lsp1109I GCAGC 3 cut(s) 213, 596, 624
LweI GCATC 2 cut(s) 339, 972
MaeI CTAG 1 cut(s) 89
MaeII ACGT 3 cut(s) 201, 364, 612
MaeIII GTNAC 4 cut(s) 265, 381, 878, 927
MalI GATC 1 cut(s) 854
MboI GATC 1 cut(s) 852
MboII GAAGA 7 cut(s) 55, 306, 508, 524, 814, 835, 838
MluCI AATT 4 cut(s) 117, 131, 323, 734
MlyI GAGTC 1 cut(s) 875
MmeI TCCRAC 2 cut(s) 360, 771
MnlI CCTC 8 cut(s) 71, 172, 172, 398, 474, 523, 583, 583
Mph1103I ATGCAT 1 cut(s) 987
MroNI GCCGGC 1 cut(s) 393
MseI TTAA 1 cut(s) 732
MslI CAYNNNNRTG 1 cut(s) 960
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 2 cut(s) 234, 394
MspR9I CCNGG 2 cut(s) 7, 271
Mva1269I GAATGC 2 cut(s) 188, 599
MvaI CCWGG 2 cut(s) 7, 271
NaeI GCCGGC 1 cut(s) 395
NcoI CCATGG 1 cut(s) 909
NdeII GATC 1 cut(s) 852
NgoMIV GCCGGC 1 cut(s) 393
NlaIII CATG 5 cut(s) 200, 770, 913, 982, 989
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 3 cut(s) 381, 878, 927
NsiI ATGCAT 1 cut(s) 987
NspI RCATGY 1 cut(s) 989
PctI GAATGC 2 cut(s) 188, 599
PdiI GCCGGC 1 cut(s) 395
PkrI GCNGC 3 cut(s) 228, 586, 639
PleI GAGTC 1 cut(s) 875
PpsI GAGTC 1 cut(s) 875
Ppu21I YACGTR 1 cut(s) 365
PsiI TTATAA 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 5, 269
PspFI CCCAGC 2 cut(s) 491, 681
PspGI CCWGG 2 cut(s) 5, 269
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 9, 113
PstI CTGCAG 2 cut(s) 175, 586
PvuII CAGCTG 1 cut(s) 587
RseI CAYNNNNRTG 1 cut(s) 960
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 3 cut(s) 227, 585, 638
Sau3AI GATC 1 cut(s) 852
Sau96I GGNCC 2 cut(s) 9, 113
SchI GAGTC 1 cut(s) 875
ScrFI CCNGG 2 cut(s) 7, 271
SfaNI GCATC 2 cut(s) 339, 972
SfcI CTRYAG 2 cut(s) 171, 582
SinI GGWCC 2 cut(s) 9, 113
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 3 cut(s) 301, 712, 797
SmoI CTYRAG 3 cut(s) 301, 712, 797
Sse9I AATT 4 cut(s) 117, 131, 323, 734
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 5, 269
StyI CCWWGG 3 cut(s) 244, 655, 909
TaaI ACNGT 2 cut(s) 218, 265
TaiI ACGT 3 cut(s) 204, 367, 615
TaqI TCGA 1 cut(s) 177
TasI AATT 4 cut(s) 117, 131, 323, 734
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TscAI CASTG 2 cut(s) 707, 936
TseFI GTSAC 3 cut(s) 381, 878, 927
TseI GCWGC 3 cut(s) 226, 584, 637
Tsp45I GTSAC 3 cut(s) 381, 878, 927
TspDTI ATGAA 5 cut(s) 34, 387, 455, 755, 978
TspGWI ACGGA 1 cut(s) 718
TspRI CASTG 2 cut(s) 707, 936
VpaK11BI GGWCC 2 cut(s) 9, 113
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 989
XmiI GTMKAC 1 cut(s) 793
XspI CTAG 1 cut(s) 89
ZraI GACGTC 1 cut(s) 613
Zsp2I ATGCAT 1 cut(s) 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.