Rw6G041980

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
65616658 .. 65622222
5565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G041980.1

Sequence Viewer

Length: 1524 bp
ATGGAAACCTCATTCCATTACTACATTTTGCTCTTCATTATTTATCTTCTCCTCAAGAACTACTTGCAGAAAAATAACAAAAGACTCCCACCAAGCCCTTCTCTATCTTTCCCTATCATAGGTCATCTCTACCTCATCAAGAAACCCCTCCACAGAACACTTGCAAAATTAGCCAACAAATATGGATCAATCTTGTACATCAAGTGCGGCTCCCGCCCTGTCGTCATTGTATCTTCTCCTTCTGCAGCTGAGGAATGCTTCACCAAAAATGACATTGCTTTTGCTAACCGCCCCGGGCTGCTTGCCGGAAAACACCTAGGATATAAATACACCACCCTTGTCTGGGCCTCTTATGGCTCTCACTGGCGCAACTTGAGGCGCATAGCTTCCCTGTTGCCTCTGAAAATCACCTCGGCCTACACAGCCGAGGGATCAAGGAACAAATATGAAGTCAGATCATTGATTTTACGCCTTTTCAGAGGTTCCATTGGTGGTGAGTTTTACATTGTGGACATGAAGTCGACGTTTTTCCAGCTGACTCTTAATGTTATCATGAGGATGATTGCTGGAAAAAGATACTATGAGGAAGACAGGACAGGATTGGAGGAAGCTAAGAGGTTTGAACAGATTGTGGTAGAGACATTTCAATTGAGTGGAGCTACTAACATTGGAGATTTTGTACCAGTTTTGAAATATGTTGGATCAAATGGGCTTGAAAAAAAGTTGTTGATATTGCAAAAGAAGAGGGACAAGTTCATGCAAGATTTGATTGAAGAACATAGAAGAGGGCAGAGTGGCTCTGTTTCTGAACAGAGGAGCAAGACCATGGTGGATGTGTTGCTGTCACTGCAAGAAACTGAACCTGAATACTACACTGATGAAATCATACGAGGCCTGATGCAAGTGATGTTATCAGCAGGAACAGAAACCTCAGCTGGAACCATGGAATGGGGCTTTTCACTTTTGCTCAACTACCCAGAAGCCCTAGCAAAAGCACAGACAGAAATTGATGTCCAAATTGGGCAAACCAGGCTCATAGAGGAAGCAGACCTTGCCAACCTTCCCTATCTCCATGGCATCATAAACGAGACCCTCAGAATGTACCCAGCAGCCCCACTTCTAGTACCCCATGAGTCATCACAAGAGTGTACACTTGGAGGCTACCATGTCCCACGTGGCACAATGCTGTTGGTGAATATGTGGGCCATACAGAATGATCCCAAATTGTGGGAGCAGCCTGAGCAGTTCAAGCCAGAGAGATTTTTAACTCCACAGAAGGAAGCAAACGGTTTCAAGTTGCTGCCATTTGGGACAGGAAGGAGGGGCTGTCCCGGCGAAGGGTTAGCGACCAGAATCGTAGGGCTGGCCTTAGGGTCACTGATCCAGTGTTTCGAGTGGAAGAGAAATGGTGAAGAAATGGTGGACATGAGTGAAGGGGCTGGCCTCACCATGCCTAAAGCTCAAGCCTTACTAGCGAAGTGCAGGCCACGCCCGATAATGCTCGCCCTACTTTCACAGCTCTAG

Protein Analysis

507

Amino Acids

57.32

Weight (kDa)

9.14

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 31 - 488 2.8e-94 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 948, 1227
AccI GTMKAC 1 cut(s) 521
AciI CCGC 3 cut(s) 207, 214, 289
AclWI GGATC 5 cut(s) 193, 439, 709, 1211, 1375
AcvI CACGTG 1 cut(s) 1175
AfaI GTAC 5 cut(s) 197, 681, 1103, 1125, 1150
AfiI CCNNNNNNNGG 7 cut(s) 119, 342, 343, 948, 1227, 1337, 1338
AgsI TTSAA 7 cut(s) 623, 647, 691, 716, 773, 1249, 1294
AhdI GACNNNNNGTC 1 cut(s) 517
AjnI CCWGG 1 cut(s) 1028
AleI CACNNNNGTG 1 cut(s) 1144
AluBI AGCT 8 cut(s) 248, 386, 535, 611, 659, 935, 1460, 1519
AluI AGCT 8 cut(s) 248, 386, 535, 611, 659, 935, 1460, 1519
Alw26I GTCTC 2 cut(s) 632, 1082
AlwI GGATC 5 cut(s) 193, 439, 709, 1211, 1375
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 7 cut(s) 345, 414, 892, 1203, 1365, 1441, 1484
ApeKI GCWGC 5 cut(s) 245, 298, 1109, 1234, 1300
ArsI GACNNNNNNTTYG 4 cut(s) 263, 295, 435, 467
AspA2I CCTAGG 1 cut(s) 316
AspLEI GCGC 2 cut(s) 369, 381
AspS9I GGNCC 2 cut(s) 345, 1203
AsuC2I CCSGG 3 cut(s) 294, 295, 1332
AsuHPI GGTGA 6 cut(s) 253, 400, 506, 1204, 1421, 1438
AvaI CYCGRG 1 cut(s) 293
AvrII CCTAGG 1 cut(s) 316
AxyI CCTNAGG 1 cut(s) 1369
BbrPI CACGTG 1 cut(s) 1175
BbsI GAAGAC 1 cut(s) 594
BbvCI CCTCAGC 2 cut(s) 249, 931
BbvI GCAGC 5 cut(s) 257, 285, 1121, 1246, 1287
BciT130I CCWGG 1 cut(s) 1030
BcnI CCSGG 3 cut(s) 294, 295, 1332
BcoDI GTCTC 2 cut(s) 632, 1082
BfaI CTAG 5 cut(s) 317, 986, 1121, 1472, 1522
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 6 cut(s) 208, 246, 299, 1110, 1235, 1301
BlnI CCTAGG 1 cut(s) 316
BlsI GCNGC 6 cut(s) 209, 247, 300, 1111, 1236, 1302
Bme1390I CCNGG 4 cut(s) 294, 295, 1030, 1332
BmeRI GACNNNNNGTC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 345, 1203
BmiI GGNNCC 3 cut(s) 211, 484, 940
BmrFI CCNGG 4 cut(s) 294, 295, 1030, 1332
BmsI GCATC 2 cut(s) 888, 1086
BpiI GAAGAC 1 cut(s) 594
Bpu10I CCTNAGC 3 cut(s) 249, 931, 1239
BpuEI CTTGAG 3 cut(s) 38, 394, 1446
BpuMI CCSGG 3 cut(s) 294, 295, 1332
BsaAI YACGTR 1 cut(s) 1175
BsaI GGTCTC 1 cut(s) 1082
BsaJI CCNNGG 8 cut(s) 292, 293, 316, 411, 426, 825, 942, 1072
BsaXI ACNNNNNCTCC 4 cut(s) 663, 693, 1312, 1342
Bsc4I CCNNNNNNNGG 7 cut(s) 119, 342, 343, 948, 1227, 1337, 1338
Bse1I ACTGG 3 cut(s) 368, 683, 1384
Bse21I CCTNAGG 1 cut(s) 1369
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 1030
BseDI CCNNGG 8 cut(s) 292, 293, 316, 411, 426, 825, 942, 1072
BseGI GGATG 2 cut(s) 564, 838
BseLI CCNNNNNNNGG 7 cut(s) 119, 342, 343, 948, 1227, 1337, 1338
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 4 cut(s) 240, 945, 1108, 1230
BseNI ACTGG 3 cut(s) 368, 683, 1384
BseRI GAGGAG 2 cut(s) 41, 829
BseXI GCAGC 5 cut(s) 257, 285, 1121, 1246, 1287
BseYI CCCAGC 1 cut(s) 1105
BsgI GTGCAG 1 cut(s) 1501
BshFI GGCC 7 cut(s) 347, 416, 894, 1205, 1367, 1443, 1486
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 3 cut(s) 294, 306, 1332
BslFI GGGAC 4 cut(s) 761, 1154, 1314, 1324
BslI CCNNNNNNNGG 7 cut(s) 119, 342, 343, 948, 1227, 1337, 1338
BsmAI GTCTC 2 cut(s) 632, 1082
BsmFI GGGAC 4 cut(s) 761, 1154, 1314, 1324
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 7 cut(s) 347, 416, 894, 1205, 1367, 1443, 1486
Bso31I GGTCTC 1 cut(s) 1082
BsoBI CYCGRG 1 cut(s) 293
Bsp1407I TGTACA 2 cut(s) 195, 1148
Bsp143I GATC 6 cut(s) 185, 431, 455, 701, 1216, 1380
Bsp19I CCATGG 3 cut(s) 825, 942, 1072
BspACI CCGC 3 cut(s) 207, 214, 289
BspANI GGCC 7 cut(s) 347, 416, 894, 1205, 1367, 1443, 1486
BspCNI CTCAG 4 cut(s) 241, 944, 1107, 1231
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 3 cut(s) 211, 484, 940
BspMAI CTGCAG 1 cut(s) 247
BspPI GGATC 5 cut(s) 193, 439, 709, 1211, 1375
BspQI GCTCTTC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 1082
BsrDI GCAATG 1 cut(s) 273
BsrGI TGTACA 2 cut(s) 195, 1148
BsrI ACTGG 3 cut(s) 368, 683, 1384
BssECI CCNNGG 8 cut(s) 292, 293, 316, 411, 426, 825, 942, 1072
BssMI GATC 6 cut(s) 185, 431, 455, 701, 1216, 1380
BssT1I CCWWGG 4 cut(s) 316, 825, 942, 1072
Bst2UI CCWGG 1 cut(s) 1030
Bst4CI ACNGT 1 cut(s) 1289
Bst6I CTCTTC 4 cut(s) 38, 737, 778, 1394
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstAUI TGTACA 2 cut(s) 195, 1148
BstBAI YACGTR 1 cut(s) 1175
BstC8I GCNNGC 5 cut(s) 303, 1365, 1441, 1484, 1503
BstDEI CTNAG 6 cut(s) 249, 612, 931, 1094, 1239, 1369
BstDSI CCRYGG 3 cut(s) 825, 942, 1072
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 564, 838
BstHHI GCGC 2 cut(s) 369, 381
BstKTI GATC 6 cut(s) 188, 434, 458, 704, 1219, 1383
BstMAI GTCTC 2 cut(s) 632, 1082
BstMBI GATC 6 cut(s) 185, 431, 455, 701, 1216, 1380
BstNI CCWGG 1 cut(s) 1030
BstSCI CCNGG 4 cut(s) 292, 293, 1028, 1330
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 5 cut(s) 257, 285, 1121, 1246, 1287
BstV2I GAAGAC 1 cut(s) 594
Bsu36I CCTNAGG 1 cut(s) 1369
BsuRI GGCC 7 cut(s) 347, 416, 894, 1205, 1367, 1443, 1486
BtgI CCRYGG 3 cut(s) 825, 942, 1072
BtsCI GGATG 2 cut(s) 564, 838
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 5 cut(s) 361, 845, 873, 1376, 1391
Cac8I GCNNGC 5 cut(s) 303, 1365, 1441, 1484, 1503
CciI TCATGA 1 cut(s) 552
CfoI GCGC 2 cut(s) 369, 381
Cfr13I GGNCC 2 cut(s) 345, 1203
Cfr9I CCCGGG 1 cut(s) 293
Csp6I GTAC 5 cut(s) 196, 680, 1102, 1124, 1149
CviQI GTAC 5 cut(s) 196, 680, 1102, 1124, 1149
DdeI CTNAG 6 cut(s) 249, 612, 931, 1094, 1239, 1369
DpnI GATC 6 cut(s) 187, 433, 457, 703, 1218, 1382
DpnII GATC 6 cut(s) 185, 431, 455, 701, 1216, 1380
DriI GACNNNNNGTC 1 cut(s) 517
Eam1104I CTCTTC 4 cut(s) 38, 737, 778, 1394
Eam1105I GACNNNNNGTC 1 cut(s) 517
EarI CTCTTC 4 cut(s) 38, 737, 778, 1394
Eco130I CCWWGG 4 cut(s) 316, 825, 942, 1072
Eco147I AGGCCT 1 cut(s) 894
Eco31I GGTCTC 1 cut(s) 1082
Eco72I CACGTG 1 cut(s) 1175
Eco81I CCTNAGG 1 cut(s) 1369
Eco88I CYCGRG 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 1028
EcoT14I CCWWGG 4 cut(s) 316, 825, 942, 1072
ErhI CCWWGG 4 cut(s) 316, 825, 942, 1072
FalI AAGNNNNNCTT 4 cut(s) 47, 79, 1035, 1067
FaqI GGGAC 4 cut(s) 761, 1154, 1314, 1324
FauI CCCGC 1 cut(s) 221
FblI GTMKAC 1 cut(s) 521
Fnu4HI GCNGC 6 cut(s) 208, 246, 299, 1110, 1235, 1301
FokI GGATG 2 cut(s) 571, 845
Fsp4HI GCNGC 6 cut(s) 208, 246, 299, 1110, 1235, 1301
FspBI CTAG 5 cut(s) 317, 986, 1121, 1472, 1522
GlaI GCGC 2 cut(s) 368, 380
GluI GCNGC 6 cut(s) 208, 246, 299, 1110, 1235, 1301
GsaI CCCAGC 1 cut(s) 1109
HaeIII GGCC 7 cut(s) 347, 416, 894, 1205, 1367, 1443, 1486
HapII CCGG 3 cut(s) 294, 306, 1332
HhaI GCGC 2 cut(s) 369, 381
Hin6I GCGC 2 cut(s) 367, 379
HinP1I GCGC 2 cut(s) 367, 379
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 4 cut(s) 84, 538, 1133, 1353
HpaII CCGG 3 cut(s) 294, 306, 1332
HphI GGTGA 6 cut(s) 253, 400, 506, 1204, 1421, 1438
Hpy166II GTNNAC 5 cut(s) 511, 522, 1149, 1151, 1423
Hpy188I TCNGA 5 cut(s) 402, 455, 479, 808, 1097
Hpy188III TCNNGA 3 cut(s) 55, 139, 553
Hpy8I GTNNAC 5 cut(s) 511, 522, 1149, 1151, 1423
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 7 cut(s) 108, 249, 1070, 1270, 1311, 1331, 1427
HpyCH4III ACNGT 1 cut(s) 1289
HpyCH4IV ACGT 2 cut(s) 524, 1174
HpyCH4V TGCA 8 cut(s) 67, 164, 245, 736, 760, 850, 901, 1482
HpyF3I CTNAG 6 cut(s) 249, 612, 931, 1094, 1239, 1369
HpySE526I ACGT 2 cut(s) 524, 1174
HspAI GCGC 2 cut(s) 367, 379
Kzo9I GATC 6 cut(s) 185, 431, 455, 701, 1216, 1380
LguI GCTCTTC 1 cut(s) 38
LmnI GCTCC 4 cut(s) 215, 656, 816, 1231
Lsp1109I GCAGC 5 cut(s) 257, 285, 1121, 1246, 1287
LweI GCATC 2 cut(s) 888, 1086
MaeI CTAG 5 cut(s) 317, 986, 1121, 1472, 1522
MaeII ACGT 2 cut(s) 524, 1174
MaeIII GTNAC 2 cut(s) 843, 1374
MalI GATC 6 cut(s) 187, 433, 457, 703, 1218, 1382
MboI GATC 6 cut(s) 185, 431, 455, 701, 1216, 1380
MboII GAAGA 9 cut(s) 25, 38, 225, 599, 754, 785, 795, 1411, 1424
MfeI CAATTG 1 cut(s) 647
MluCI AATT 5 cut(s) 167, 647, 1005, 1017, 1223
MlyI GAGTC 3 cut(s) 78, 532, 1142
MmeI TCCRAC 1 cut(s) 679
MseI TTAA 2 cut(s) 543, 1265
MslI CAYNNNNRTG 2 cut(s) 557, 1144
MspA1I CMGCKG 3 cut(s) 248, 535, 935
MspI CCGG 3 cut(s) 294, 306, 1332
MspR9I CCNGG 4 cut(s) 294, 295, 1030, 1332
MunI CAATTG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 1030
NciI CCSGG 3 cut(s) 294, 295, 1332
NcoI CCATGG 3 cut(s) 825, 942, 1072
NdeII GATC 6 cut(s) 185, 431, 455, 701, 1216, 1380
NlaIV GGNNCC 3 cut(s) 211, 484, 940
NmeAIII GCCGAG 2 cut(s) 392, 451
NmuCI GTSAC 2 cut(s) 843, 1374
OliI CACNNNNGTG 1 cut(s) 1144
PagI TCATGA 1 cut(s) 552
PceI AGGCCT 1 cut(s) 894
PciSI GCTCTTC 1 cut(s) 38
PctI GAATGC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 1353
PflMI CCANNNNNTGG 2 cut(s) 948, 1227
PkrI GCNGC 6 cut(s) 209, 247, 300, 1111, 1236, 1302
PleI GAGTC 3 cut(s) 78, 532, 1141
PmaCI CACGTG 1 cut(s) 1175
PmlI CACGTG 1 cut(s) 1175
PpsI GAGTC 3 cut(s) 78, 532, 1141
Ppu21I YACGTR 1 cut(s) 1175
Psp6I CCWGG 1 cut(s) 1028
PspCI CACGTG 1 cut(s) 1175
PspFI CCCAGC 1 cut(s) 1105
PspGI CCWGG 1 cut(s) 1028
PspN4I GGNNCC 3 cut(s) 211, 484, 940
PspPI GGNCC 2 cut(s) 345, 1203
PstI CTGCAG 1 cut(s) 247
PvuII CAGCTG 3 cut(s) 248, 535, 935
RsaI GTAC 5 cut(s) 197, 681, 1103, 1125, 1150
RsaNI GTAC 5 cut(s) 196, 680, 1102, 1124, 1149
RseI CAYNNNNRTG 2 cut(s) 557, 1144
SalI GTCGAC 1 cut(s) 520
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 543, 1265
SatI GCNGC 6 cut(s) 208, 246, 299, 1110, 1235, 1301
Sau3AI GATC 6 cut(s) 185, 431, 455, 701, 1216, 1380
Sau96I GGNCC 2 cut(s) 345, 1203
SchI GAGTC 3 cut(s) 78, 532, 1142
ScrFI CCNGG 4 cut(s) 294, 295, 1030, 1332
SfaNI GCATC 2 cut(s) 888, 1086
SfcI CTRYAG 1 cut(s) 243
SmaI CCCGGG 1 cut(s) 295
SmiMI CAYNNNNRTG 2 cut(s) 557, 1144
SmlI CTYRAG 3 cut(s) 53, 373, 1461
SmoI CTYRAG 3 cut(s) 53, 373, 1461
Sse9I AATT 5 cut(s) 167, 647, 1005, 1017, 1223
SseBI AGGCCT 1 cut(s) 894
SsiI CCGC 3 cut(s) 207, 214, 289
SspMI CTAG 5 cut(s) 317, 986, 1121, 1472, 1522
StuI AGGCCT 1 cut(s) 894
StyD4I CCNGG 4 cut(s) 292, 293, 1028, 1330
StyI CCWWGG 4 cut(s) 316, 825, 942, 1072
TaaI ACNGT 1 cut(s) 1289
TaiI ACGT 2 cut(s) 527, 1177
TaqI TCGA 2 cut(s) 521, 1392
TasI AATT 5 cut(s) 167, 647, 1005, 1017, 1223
TatI WGTACW 2 cut(s) 195, 1148
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 1353
Tru1I TTAA 2 cut(s) 543, 1265
Tru9I TTAA 2 cut(s) 543, 1265
TscAI CASTG 5 cut(s) 368, 852, 880, 1383, 1391
TseFI GTSAC 2 cut(s) 843, 1374
TseI GCWGC 5 cut(s) 245, 298, 1109, 1234, 1300
Tsp45I GTSAC 2 cut(s) 843, 1374
TspDTI ATGAA 5 cut(s) 25, 462, 530, 745, 894
TspMI CCCGGG 1 cut(s) 293
TspRI CASTG 5 cut(s) 368, 852, 880, 1383, 1391
Van91I CCANNNNNTGG 2 cut(s) 948, 1227
XagI CCTNNNNNAGG 1 cut(s) 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 1172
XmaI CCCGGG 1 cut(s) 293
XmaJI CCTAGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 5 cut(s) 317, 986, 1121, 1472, 1522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.