Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8411305.1

Orthogroup ID

OG0002267

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1319

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8411305.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggaaacctcattccattactacattttgctcttcattatttatcttctcctcaagaactacttgcagaaaaataacaaaagactcccaccaagcccttctctatctttccctatcacaggtcatctctacctcatcaagaaacccctccacagaacacttgcaaaactagccaacaaatatggatcaatcttgtacatcaagtgcggctcccgccctgtcgtcattgtatcttctccttctgcagctgaggaatgcttcaccaaaaatgacattgcttttgctaaccgccccgggctgcttgccggaaaacacctaggatataaatacaccacccttgtctgggcctcttatggctctcactggcgcaacttgaggcgcatagcttcccttgagctattgtcatctcgccgccttcagatgtttcatggaatacgtgcagatgaagtcagatcattgattttacgccttttccgaggttccattggtggtgagttttacattgtggacatgaagtcgacgtttttccagctgactcttaatgttatcatgaggatgattgctggaaaaagatactatgaggaagacaggacaggattggaggaagctaagaggtttgaacagattgtggtagagacatttcaattgagtggagctactaacattggagattttgtaccagttttgaaatatgttggatcaaatgggcttgaaaaaaagttgttgatattgcaaaagaagagggacaagttcatgcaagatttgattgaagaacatagaagagggcagagtggctctgtttctgaacagaggagcaagaccatggtggatgtgttgctgtcactgcaagaaactgaacctgaatactacactgatgaaatcataagaggcctgatgcaagtgatgttatcagcaggaacagaaacctcagctggaaccatggaatggggcttttcacttttgctcaacaatccagaagccctagcaaaagcacagacagaaattgatgtccaaattgggcaaaccaggctcatagaggaagcagaccttgccaaccttccctatctccatggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00905 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map01100 map01110 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

358

Amino Acids

40.83

Weight (kDa)

9.23

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33451 FvH4_2g33470 FvH4_2g33471 FvH4_2g33490
malus_domestica	MD08G1090000.v1.1 MD15G1074600.v1.1 MD15G1074800.v1.1
prunus_persica	Prupe.1G427100_v2.0.a1 Prupe.1G427300_v2.0.a1
pyrus_communis	pycom15g06960 pycom15g06970
rosa_chinensis	RchiOBHm_Chr6g0309031 RchiOBHm_Chr6g0309071
rosa_laevigata	RLG00000010592 RLG00000010595 RLG00000010596
rosa_multiflora	Rmu_co8367281.1_g000001 Rmu_co8411305.1_g000001 Rmu_sc0012331.1_g000004 Rmu_sc0012331.1_g000005 Rmu_sc0012331.1_g000007 Rmu_sc0019440.1_g000001 Rmu_sc0034731.1_g000001 Rmu_sc0040393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159670 Rroxscaffold_7G00159710 Rroxscaffold_7G00159720 Rroxscaffold_7G00159730
rosa_rugosa	Rorug06G0369400 Rorug07G0309400.1
rosa_samantha	Rh6AG481800 Rh6AG481900 Rh6AG482200 Rh6BG490800 Rh6BG491100 Rh6DG482300 Rh6DG482400 Rh6DG482500 Rh7BG435000 Rh7BG435400
rosa_wichuraiana	Rw6G041950 Rw6G041960 Rw6G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	945
AccI	GTMKAC	1 cut(s)	518
AciI	CCGC	4 cut(s)	207, 214, 289, 412
AclWI	GGATC	2 cut(s)	193, 706
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	197, 678
AfiI	CCNNNNNNNGG	4 cut(s)	119, 342, 343, 945
AgsI	TTSAA	5 cut(s)	620, 644, 688, 713, 770
AhdI	GACNNNNNGTC	1 cut(s)	514
AjnI	CCWGG	1 cut(s)	1025
AluBI	AGCT	7 cut(s)	248, 386, 397, 532, 608, 656, 932
AluI	AGCT	7 cut(s)	248, 386, 397, 532, 608, 656, 932
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	2 cut(s)	193, 706
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	345, 889
ApeKI	GCWGC	2 cut(s)	245, 298
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspA2I	CCTAGG	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	369, 381
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	2 cut(s)	294, 295
AsuHPI	GGTGA	2 cut(s)	253, 503
AvaI	CYCGRG	1 cut(s)	293
AvrII	CCTAGG	1 cut(s)	316
BbsI	GAAGAC	1 cut(s)	591
BbvCI	CCTCAGC	2 cut(s)	249, 928
BbvI	GCAGC	2 cut(s)	257, 285
BciT130I	CCWGG	1 cut(s)	1027
BcnI	CCSGG	2 cut(s)	294, 295
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	3 cut(s)	170, 317, 983
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	4 cut(s)	208, 246, 299, 412
BlnI	CCTAGG	1 cut(s)	316
BlsI	GCNGC	4 cut(s)	209, 247, 300, 413
Bme1390I	CCNGG	3 cut(s)	294, 295, 1027
BmeRI	GACNNNNNGTC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	3 cut(s)	211, 481, 937
BmrFI	CCNGG	3 cut(s)	294, 295, 1027
BmsI	GCATC	1 cut(s)	885
BpiI	GAAGAC	1 cut(s)	591
Bpu10I	CCTNAGC	2 cut(s)	249, 928
BpuEI	CTTGAG	3 cut(s)	38, 394, 413
BpuMI	CCSGG	2 cut(s)	294, 295
BsaAI	YACGTR	1 cut(s)	437
BsaJI	CCNNGG	7 cut(s)	292, 293, 316, 475, 822, 939, 1069
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	119, 342, 343, 945
Bse1I	ACTGG	2 cut(s)	368, 680
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	1027
BseDI	CCNNGG	7 cut(s)	292, 293, 316, 475, 822, 939, 1069
BseGI	GGATG	2 cut(s)	561, 835
BseLI	CCNNNNNNNGG	4 cut(s)	119, 342, 343, 945
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	240, 942
BseNI	ACTGG	2 cut(s)	368, 680
BseRI	GAGGAG	2 cut(s)	41, 826
BseXI	GCAGC	2 cut(s)	257, 285
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	347, 891
BsiHKCI	CYCGRG	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	294, 306
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	4 cut(s)	119, 342, 343, 945
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	758
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	347, 891
BsoBI	CYCGRG	1 cut(s)	293
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	185, 452, 698
Bsp19I	CCATGG	3 cut(s)	822, 939, 1069
BspACI	CCGC	4 cut(s)	207, 214, 289, 412
BspANI	GGCC	2 cut(s)	347, 891
BspCNI	CTCAG	2 cut(s)	241, 941
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	3 cut(s)	211, 481, 937
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	2 cut(s)	193, 706
BspQI	GCTCTTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	273
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	368, 680
BssECI	CCNNGG	7 cut(s)	292, 293, 316, 475, 822, 939, 1069
BssMI	GATC	3 cut(s)	185, 452, 698
BssT1I	CCWWGG	4 cut(s)	316, 822, 939, 1069
Bst2UI	CCWGG	1 cut(s)	1027
Bst6I	CTCTTC	3 cut(s)	38, 734, 775
BstAPI	GCANNNNNTGC	1 cut(s)	1049
BstAUI	TGTACA	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	249, 609, 928
BstDSI	CCRYGG	3 cut(s)	822, 939, 1069
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	561, 835
BstHHI	GCGC	2 cut(s)	369, 381
BstKTI	GATC	3 cut(s)	188, 455, 701
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	3 cut(s)	185, 452, 698
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 213, 844, 1027, 1049
BstNI	CCWGG	1 cut(s)	1027
BstSCI	CCNGG	3 cut(s)	292, 293, 1025
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	257, 285
BstV2I	GAAGAC	1 cut(s)	591
BsuRI	GGCC	2 cut(s)	347, 891
BtgI	CCRYGG	3 cut(s)	822, 939, 1069
BtsCI	GGATG	2 cut(s)	561, 835
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	3 cut(s)	361, 842, 870
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	2 cut(s)	369, 381
Cfr13I	GGNCC	1 cut(s)	345
Cfr9I	CCCGGG	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	196, 677
CviAII	CATG	7 cut(s)	428, 511, 550, 754, 823, 940, 1070
CviQI	GTAC	2 cut(s)	196, 677
DdeI	CTNAG	3 cut(s)	249, 609, 928
DpnI	GATC	3 cut(s)	187, 454, 700
DpnII	GATC	3 cut(s)	185, 452, 698
DriI	GACNNNNNGTC	1 cut(s)	514
Eam1104I	CTCTTC	3 cut(s)	38, 734, 775
Eam1105I	GACNNNNNGTC	1 cut(s)	514
EarI	CTCTTC	3 cut(s)	38, 734, 775
Eco130I	CCWWGG	4 cut(s)	316, 822, 939, 1069
Eco147I	AGGCCT	1 cut(s)	891
Eco57I	CTGAAG	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	1025
EcoT14I	CCWWGG	4 cut(s)	316, 822, 939, 1069
ErhI	CCWWGG	4 cut(s)	316, 822, 939, 1069
FaeI	CATG	7 cut(s)	431, 514, 553, 757, 826, 943, 1073
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 1032, 1064
FaqI	GGGAC	1 cut(s)	758
FatI	CATG	7 cut(s)	427, 510, 549, 753, 822, 939, 1069
FauI	CCCGC	1 cut(s)	221
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	4 cut(s)	208, 246, 299, 412
FokI	GGATG	2 cut(s)	568, 842
Fsp4HI	GCNGC	4 cut(s)	208, 246, 299, 412
FspBI	CTAG	3 cut(s)	170, 317, 983
GlaI	GCGC	2 cut(s)	368, 380
GluI	GCNGC	4 cut(s)	208, 246, 299, 412
HaeIII	GGCC	2 cut(s)	347, 891
HapII	CCGG	2 cut(s)	294, 306
HhaI	GCGC	2 cut(s)	369, 381
Hin1II	CATG	7 cut(s)	431, 514, 553, 757, 826, 943, 1073
Hin6I	GCGC	2 cut(s)	367, 379
HinP1I	GCGC	2 cut(s)	367, 379
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	2 cut(s)	84, 535
HpaII	CCGG	2 cut(s)	294, 306
HphI	GGTGA	2 cut(s)	253, 503
Hpy166II	GTNNAC	2 cut(s)	508, 519
Hpy188I	TCNGA	4 cut(s)	420, 452, 476, 805
Hpy188III	TCNNGA	4 cut(s)	55, 139, 550, 974
Hpy8I	GTNNAC	2 cut(s)	508, 519
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	4 cut(s)	108, 249, 425, 1067
HpyCH4IV	ACGT	2 cut(s)	436, 521
HpyCH4V	TGCA	8 cut(s)	67, 164, 245, 440, 733, 757, 847, 898
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 213, 844, 1027, 1049
HpyF3I	CTNAG	3 cut(s)	249, 609, 928
HpySE526I	ACGT	2 cut(s)	436, 521
Hsp92II	CATG	7 cut(s)	431, 514, 553, 757, 826, 943, 1073
HspAI	GCGC	2 cut(s)	367, 379
Kzo9I	GATC	3 cut(s)	185, 452, 698
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	215, 653, 813
Lsp1109I	GCAGC	2 cut(s)	257, 285
LweI	GCATC	1 cut(s)	885
MaeI	CTAG	3 cut(s)	170, 317, 983
MaeII	ACGT	2 cut(s)	436, 521
MaeIII	GTNAC	1 cut(s)	840
MalI	GATC	3 cut(s)	187, 454, 700
MboI	GATC	3 cut(s)	185, 452, 698
MboII	GAAGA	7 cut(s)	25, 38, 225, 596, 751, 782, 792
MfeI	CAATTG	1 cut(s)	644
MluCI	AATT	3 cut(s)	644, 1002, 1014
MlyI	GAGTC	2 cut(s)	78, 529
MmeI	TCCRAC	1 cut(s)	676
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	3 cut(s)	248, 532, 932
MspI	CCGG	2 cut(s)	294, 306
MspR9I	CCNGG	3 cut(s)	294, 295, 1027
MunI	CAATTG	1 cut(s)	644
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	1027
MwoI	GCNNNNNNNGC	5 cut(s)	170, 213, 844, 1027, 1049
NciI	CCSGG	2 cut(s)	294, 295
NcoI	CCATGG	3 cut(s)	822, 939, 1069
NdeII	GATC	3 cut(s)	185, 452, 698
NlaIII	CATG	7 cut(s)	431, 514, 553, 757, 826, 943, 1073
NlaIV	GGNNCC	3 cut(s)	211, 481, 937
NmuCI	GTSAC	1 cut(s)	840
PagI	TCATGA	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	891
PciSI	GCTCTTC	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PctI	GAATGC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	945
PkrI	GCNGC	4 cut(s)	209, 247, 300, 413
PleI	GAGTC	2 cut(s)	78, 529
PpsI	GAGTC	2 cut(s)	78, 529
Ppu21I	YACGTR	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	1025
PspGI	CCWGG	1 cut(s)	1025
PspN4I	GGNNCC	3 cut(s)	211, 481, 937
PspPI	GGNCC	1 cut(s)	345
PstI	CTGCAG	1 cut(s)	247
PvuII	CAGCTG	3 cut(s)	248, 532, 932
RsaI	GTAC	2 cut(s)	197, 678
RsaNI	GTAC	2 cut(s)	196, 677
RseI	CAYNNNNRTG	1 cut(s)	554
SalI	GTCGAC	1 cut(s)	517
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	4 cut(s)	208, 246, 299, 412
Sau3AI	GATC	3 cut(s)	185, 452, 698
Sau96I	GGNCC	1 cut(s)	345
SchI	GAGTC	2 cut(s)	78, 529
ScrFI	CCNGG	3 cut(s)	294, 295, 1027
SfaNI	GCATC	1 cut(s)	885
SfcI	CTRYAG	1 cut(s)	243
SmaI	CCCGGG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	3 cut(s)	53, 373, 392
SmoI	CTYRAG	3 cut(s)	53, 373, 392
Sse9I	AATT	3 cut(s)	644, 1002, 1014
SseBI	AGGCCT	1 cut(s)	891
SsiI	CCGC	4 cut(s)	207, 214, 289, 412
SspMI	CTAG	3 cut(s)	170, 317, 983
StuI	AGGCCT	1 cut(s)	891
StyD4I	CCNGG	3 cut(s)	292, 293, 1025
StyI	CCWWGG	4 cut(s)	316, 822, 939, 1069
TaiI	ACGT	2 cut(s)	439, 524
TaqI	TCGA	1 cut(s)	518
TasI	AATT	3 cut(s)	644, 1002, 1014
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	2 cut(s)	210, 414
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	3 cut(s)	368, 849, 877
TseFI	GTSAC	1 cut(s)	840
TseI	GCWGC	2 cut(s)	245, 298
Tsp45I	GTSAC	1 cut(s)	840
TspDTI	ATGAA	6 cut(s)	25, 416, 459, 527, 742, 891
TspMI	CCCGGG	1 cut(s)	293
TspRI	CASTG	3 cut(s)	368, 849, 877
Van91I	CCANNNNNTGG	1 cut(s)	945
XagI	CCTNNNNNAGG	1 cut(s)	117
XmaI	CCCGGG	1 cut(s)	293
XmaJI	CCTAGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	3 cut(s)	170, 317, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.