Rroxscaffold_7G00159670

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002267
Physical Location & Seq
Reverse (-)
2789825 .. 2793296
3472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159670.1

Sequence Viewer

Length: 369 bp
ATGCAAGATTTGATTGAAGAACATAGAAAAGGGCAGAGTGGCTCTGTTTCTGAACAGAGGAGCAAGACCATGGTGGATGTGTTGCTGTCACTGCAAGAAACTGAACCTGAATACTACACTGATGAAATCATAAGAGGCCTGATGCAAGTGATGTTATCAGCCGGAACAGAAACCTCAGCTGGAACCATGGAATGGGGCTTTTCACTTTTGCCCAACAGCCCAGAAGCCCTAGCAAAAGCACAGACAGAAATTGATGTCCAAATTGGGCAAACCAGGCTCATAGAGGAAGCAGACCTTGCCAACCTTCCCTATCTCCATGGCATAATAAACGAGACCCTCAGAATGTACCCCAGCAGCCCCATGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

122

Amino Acids

13.57

Weight (kDa)

4.4

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 121 1.5e-25 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 192
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 326
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 354
BbvCI CCTCAGC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 175
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 4 cut(s) 69, 186, 316, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 4 cut(s) 69, 186, 316, 360
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 2 cut(s) 189, 352
BseRI GAGGAG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 350
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 326
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 326
Bsp19I CCATGG 4 cut(s) 69, 186, 316, 360
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 188, 351
BspLI GGNNCC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 326
BssECI CCNNGG 4 cut(s) 69, 186, 316, 360
BssT1I CCWWGG 4 cut(s) 69, 186, 316, 360
Bst2UI CCWGG 1 cut(s) 274
BstAPI GCANNNNNTGC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 175, 338
BstDSI CCRYGG 4 cut(s) 69, 186, 316, 360
BstF5I GGATG 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 326
BstMWI GCNNNNNNNGC 3 cut(s) 91, 274, 296
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BsuRI GGCC 1 cut(s) 138
BtgI CCRYGG 4 cut(s) 69, 186, 316, 360
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 89, 117
Csp6I GTAC 1 cut(s) 346
CviAII CATG 4 cut(s) 70, 187, 317, 361
CviJI RGCY 9 cut(s) 42, 138, 161, 179, 198, 219, 227, 277, 357
CviKI_1 RGCY 9 cut(s) 42, 138, 161, 179, 198, 219, 227, 277, 357
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 175, 338
Eco130I CCWWGG 4 cut(s) 69, 186, 316, 360
Eco147I AGGCCT 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 4 cut(s) 69, 186, 316, 360
ErhI CCWWGG 4 cut(s) 69, 186, 316, 360
FaeI CATG 4 cut(s) 73, 190, 320, 364
FaiI YATR 9 cut(s) 24, 71, 131, 188, 281, 318, 323, 362, 367
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FatI CATG 4 cut(s) 69, 186, 316, 360
Fnu4HI GCNGC 1 cut(s) 355
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 355
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 355
GsaI CCCAGC 1 cut(s) 354
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 162
Hin1II CATG 4 cut(s) 73, 190, 320, 364
HpaII CCGG 1 cut(s) 162
Hpy188I TCNGA 2 cut(s) 52, 341
HpyAV CCTTC 1 cut(s) 314
HpyCH4V TGCA 3 cut(s) 4, 94, 145
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 274, 296
HpyF3I CTNAG 2 cut(s) 175, 338
Hsp92II CATG 4 cut(s) 73, 190, 320, 364
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 8 cut(s) 120, 152, 165, 175, 234, 259, 286, 364
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 87
MboII GAAGA 1 cut(s) 29
MluCI AATT 2 cut(s) 249, 261
MnlI CCTC 5 cut(s) 51, 128, 184, 277, 347
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 3 cut(s) 91, 274, 296
NcoI CCATGG 4 cut(s) 69, 186, 316, 360
NlaIII CATG 4 cut(s) 73, 190, 320, 364
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 87
PceI AGGCCT 1 cut(s) 138
PflMI CCANNNNNTGG 1 cut(s) 192
PkrI GCNGC 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SatI GCNGC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 274
SetI ASST 5 cut(s) 109, 176, 181, 297, 306
SfaNI GCATC 1 cut(s) 132
Sse9I AATT 2 cut(s) 249, 261
SseBI AGGCCT 1 cut(s) 138
SspMI CTAG 1 cut(s) 230
StuI AGGCCT 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 4 cut(s) 69, 186, 316, 360
TasI AATT 2 cut(s) 249, 261
TscAI CASTG 2 cut(s) 96, 124
TseFI GTSAC 1 cut(s) 87
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 138
TspRI CASTG 2 cut(s) 96, 124
Van91I CCANNNNNTGG 1 cut(s) 192
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.