Rroxscaffold_7G00159710

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002267
Physical Location & Seq
Forward (+)
2808420 .. 2809681
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159710.1

Sequence Viewer

Length: 1092 bp
ATGTATCATGGCATACGTGCAGATGAAGTTAGGTCACTAATTTGCAAGCTTTTTCGAGGGTCTAAAGGTGGTGAACTGCGGAGTTTAGATATGAAGTCAACGTTTTTCGAGCTTACTCTTAATGTTTTGATGAGGGTGATTGCTGGGAAGAGATACTATGGGGAAGACATCGCAAAGTCAAAGAGTTTTGAACAAATTGTGAAAGAGACTTTTCAATTGAGTGGGGCTAACAGTATTGGAGATTTCTTGCCAGTTTTAGAGTACTTTGGATCAGGTGGCCTTGAGAAAAAGTTGGTGAAATTGCAAAAGAAGAGGGATACGTTCATGCAATATTTGATCGAAGAACACAGAAAAGTGCAGAGTGGCTCTGTTTCTGAACCGAAGAGCAAGACCATGGTGGATTTCTTGTTGTCGCTGCAAGCAACTGAACCTGAATATTATACTGATGAAATCATAAGAGGCATGATGCAAAACATGTTAACAGTAGGAACAGACACCTCGGCTGGAACCATGGAATGGGCTCTATCACTATTGCTCAACAACCCAGAAGCCCTTGCAAAGGCACAGACAGAATTTGATAACAAAATTGGGCAAAGCAGTCTAATTGAGGAATCAGACCTTGCTAATCTCCCCTATCTCCGCTGCATCATAAATGAGACCCTCAGAATGTACCCAGCAGCCGCACTTCTTCCCCCACATGAGTCATCAGAGGACTGCACTGTGGGAGGCTTCAACGTTCCTCGTGGAACAATGTTATTGGTGAATGCATGGGCCATACATCATGATCCTAAGTTGTGGGAAGAGCCTGAACAATTTAAGCCAGAGAGGTTCCAAAATGCACAAGAAGAAAGAGATGTTTTCATGTACTTGCCATTTGGGACAGGAAGGAGAGGCTGTCCTGGGGAAGGGTTAGCAAAACGGATCGTAGGGCTGGCCTTAGGGTCAGTCATTCAGTGTTTTGAGTGGGAGAGAAGTGGTGAGGAGATGGTGGACATGACTGAAGGGACTGGCATCTCAATGCCTAAAGCTCACCCTTTGCTAGCAAAATGCAGGCCACGCCCAACGATGCTGGCCTTACTTTCTCAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

363

Amino Acids

40.82

Weight (kDa)

5.7

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 19 - 343 1.1e-78 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 516
AciI CCGC 3 cut(s) 79, 640, 681
AclI AACGTT 2 cut(s) 101, 735
AclWI GGATC 3 cut(s) 277, 779, 929
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 1020
AfaI GTAC 3 cut(s) 263, 671, 866
AfiI CCNNNNNNNGG 3 cut(s) 516, 559, 905
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 3 cut(s) 191, 215, 733
AjnI CCWGG 1 cut(s) 898
AluBI AGCT 3 cut(s) 49, 112, 1028
AluI AGCT 3 cut(s) 49, 112, 1028
Alw26I GTCTC 2 cut(s) 200, 650
AlwI GGATC 3 cut(s) 277, 779, 929
AoxI GGCC 5 cut(s) 277, 771, 933, 1052, 1071
ApeKI GCWGC 3 cut(s) 415, 642, 677
ApoI RAATTY 1 cut(s) 572
AspS9I GGNCC 1 cut(s) 771
AsuHPI GGTGA 6 cut(s) 83, 148, 307, 772, 989, 1022
AsuNHI GCTAGC 1 cut(s) 1039
AxyI CCTNAGG 1 cut(s) 937
BanII GRGCYC 1 cut(s) 523
BauI CACGAG 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 3 cut(s) 402, 629, 689
BccI CCATC 1 cut(s) 979
BciT130I CCWGG 1 cut(s) 900
BciVI GTATCC 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 200, 650
BfaI CTAG 1 cut(s) 1040
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 4 cut(s) 416, 643, 678, 681
BlsI GCNGC 4 cut(s) 417, 644, 679, 682
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 900
BmgT120I GGNCC 1 cut(s) 771
BmiI GGNNCC 2 cut(s) 508, 830
BmrFI CCNGG 1 cut(s) 900
BmsI GCATC 4 cut(s) 456, 654, 1020, 1056
BmtI GCTAGC 1 cut(s) 1043
BpiI GAAGAC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 4 cut(s) 393, 498, 510, 899
BsaXI ACNNNNNCTCC 2 cut(s) 880, 910
Bsc4I CCNNNNNNNGG 3 cut(s) 516, 559, 905
Bse1I ACTGG 2 cut(s) 251, 1012
Bse21I CCTNAGG 1 cut(s) 937
BseBI CCWGG 1 cut(s) 900
BseDI CCNNGG 4 cut(s) 393, 498, 510, 899
BseLI CCNNNNNNNGG 3 cut(s) 516, 559, 905
BseMII CTCAG 1 cut(s) 676
BseNI ACTGG 2 cut(s) 251, 1012
BseRI GAGGAG 1 cut(s) 995
BseXI GCAGC 3 cut(s) 402, 629, 689
BseYI CCCAGC 2 cut(s) 143, 673
BsgI GTGCAG 3 cut(s) 39, 377, 700
BshFI GGCC 5 cut(s) 279, 773, 935, 1054, 1073
BslFI GGGAC 2 cut(s) 892, 1018
BslI CCNNNNNNNGG 3 cut(s) 516, 559, 905
BsmAI GTCTC 2 cut(s) 200, 650
BsmFI GGGAC 2 cut(s) 892, 1018
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 5 cut(s) 279, 773, 935, 1054, 1073
Bso31I GGTCTC 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 523
Bsp143I GATC 4 cut(s) 269, 336, 784, 921
Bsp19I CCATGG 2 cut(s) 393, 510
BspACI CCGC 3 cut(s) 79, 640, 681
BspANI GGCC 5 cut(s) 279, 773, 935, 1054, 1073
BspCNI CTCAG 1 cut(s) 675
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 2 cut(s) 508, 830
BspOI GCTAGC 1 cut(s) 1043
BspPI GGATC 3 cut(s) 277, 779, 929
BspQI GCTCTTC 2 cut(s) 377, 795
BspTNI GGTCTC 1 cut(s) 650
BsrI ACTGG 2 cut(s) 251, 1012
BssECI CCNNGG 4 cut(s) 393, 498, 510, 899
BssMI GATC 4 cut(s) 269, 336, 784, 921
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 2 cut(s) 393, 510
Bst2BI CACGAG 1 cut(s) 741
Bst2UI CCWGG 1 cut(s) 900
Bst4CI ACNGT 3 cut(s) 233, 484, 721
Bst6I CTCTTC 4 cut(s) 143, 305, 377, 795
BstBAI YACGTR 1 cut(s) 17
BstC8I GCNNGC 6 cut(s) 47, 420, 933, 1041, 1052, 1071
BstDEI CTNAG 3 cut(s) 662, 789, 937
BstDSI CCRYGG 2 cut(s) 393, 510
BstENI CCTNNNNNAGG 2 cut(s) 557, 903
BstKTI GATC 4 cut(s) 272, 339, 787, 924
BstMAI GTCTC 2 cut(s) 200, 650
BstMBI GATC 4 cut(s) 269, 336, 784, 921
BstMWI GCNNNNNNNGC 1 cut(s) 1056
BstNI CCWGG 1 cut(s) 900
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 898
BstV1I GCAGC 3 cut(s) 402, 629, 689
BstV2I GAAGAC 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 937
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 5 cut(s) 279, 773, 935, 1054, 1073
BtgI CCRYGG 2 cut(s) 393, 510
BtgZI GCGATG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 717, 959
Cac8I GCNNGC 6 cut(s) 47, 420, 933, 1041, 1052, 1071
CciI TCATGA 1 cut(s) 781
Cfr13I GGNCC 1 cut(s) 771
Csp6I GTAC 3 cut(s) 262, 670, 865
CviQI GTAC 3 cut(s) 262, 670, 865
DdeI CTNAG 3 cut(s) 662, 789, 937
DpnI GATC 4 cut(s) 271, 338, 786, 923
DpnII GATC 4 cut(s) 269, 336, 784, 921
Eam1104I CTCTTC 4 cut(s) 143, 305, 377, 795
EarI CTCTTC 4 cut(s) 143, 305, 377, 795
Eco130I CCWWGG 2 cut(s) 393, 510
Eco24I GRGCYC 1 cut(s) 523
Eco31I GGTCTC 1 cut(s) 650
Eco57I CTGAAG 1 cut(s) 1020
Eco81I CCTNAGG 1 cut(s) 937
EcoNI CCTNNNNNAGG 2 cut(s) 557, 903
EcoRII CCWGG 1 cut(s) 898
EcoT14I CCWWGG 2 cut(s) 393, 510
EcoT22I ATGCAT 1 cut(s) 769
EcoT38I GRGCYC 1 cut(s) 523
ErhI CCWWGG 2 cut(s) 393, 510
FaqI GGGAC 2 cut(s) 892, 1018
Fnu4HI GCNGC 4 cut(s) 416, 643, 678, 681
FriOI GRGCYC 1 cut(s) 523
Fsp4HI GCNGC 4 cut(s) 416, 643, 678, 681
FspBI CTAG 1 cut(s) 1040
GluI GCNGC 4 cut(s) 416, 643, 678, 681
GsaI CCCAGC 2 cut(s) 147, 677
HaeIII GGCC 5 cut(s) 279, 773, 935, 1054, 1073
HincII GTYRAC 2 cut(s) 99, 480
HindII GTYRAC 2 cut(s) 99, 480
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 611, 701
HpaI GTTAAC 1 cut(s) 480
HphI GGTGA 6 cut(s) 83, 148, 307, 772, 989, 1022
Hpy166II GTNNAC 4 cut(s) 74, 99, 480, 991
Hpy188I TCNGA 4 cut(s) 376, 616, 665, 709
Hpy188III TCNNGA 1 cut(s) 782
Hpy8I GTNNAC 4 cut(s) 74, 99, 480, 991
HpyAV CCTTC 3 cut(s) 879, 899, 995
HpyCH4III ACNGT 3 cut(s) 233, 484, 721
HpyCH4IV ACGT 4 cut(s) 16, 101, 320, 735
HpyF10VI GCNNNNNNNGC 1 cut(s) 1056
HpyF3I CTNAG 3 cut(s) 662, 789, 937
HpySE526I ACGT 4 cut(s) 16, 101, 320, 735
KspAI GTTAAC 1 cut(s) 480
Kzo9I GATC 4 cut(s) 269, 336, 784, 921
LguI GCTCTTC 2 cut(s) 377, 795
Lsp1109I GCAGC 3 cut(s) 402, 629, 689
LweI GCATC 4 cut(s) 456, 654, 1020, 1056
MaeI CTAG 1 cut(s) 1040
MaeII ACGT 4 cut(s) 16, 101, 320, 735
MaeIII GTNAC 1 cut(s) 33
MalI GATC 4 cut(s) 271, 338, 786, 923
MboI GATC 4 cut(s) 269, 336, 784, 921
MboII GAAGA 8 cut(s) 160, 176, 322, 353, 394, 680, 812, 857
MfeI CAATTG 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 8 cut(s) 39, 195, 215, 299, 572, 585, 603, 812
MlyI GAGTC 1 cut(s) 710
Mph1103I ATGCAT 1 cut(s) 769
MseI TTAA 3 cut(s) 120, 479, 816
MslI CAYNNNNRTG 1 cut(s) 1016
MspA1I CMGCKG 1 cut(s) 642
MspR9I CCNGG 1 cut(s) 900
MunI CAATTG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 769
MvaI CCWGG 1 cut(s) 900
MwoI GCNNNNNNNGC 1 cut(s) 1056
NcoI CCATGG 2 cut(s) 393, 510
NdeII GATC 4 cut(s) 269, 336, 784, 921
NheI GCTAGC 1 cut(s) 1039
NlaIV GGNNCC 2 cut(s) 508, 830
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 1 cut(s) 33
NsiI ATGCAT 1 cut(s) 769
NspI RCATGY 1 cut(s) 478
PagI TCATGA 1 cut(s) 781
PciI ACATGT 1 cut(s) 474
PciSI GCTCTTC 2 cut(s) 377, 795
PctI GAATGC 1 cut(s) 769
PfeI GAWTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 516
PkrI GCNGC 4 cut(s) 417, 644, 679, 682
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
Ppu21I YACGTR 1 cut(s) 17
PscI ACATGT 1 cut(s) 474
Psp1406I AACGTT 2 cut(s) 101, 735
Psp6I CCWGG 1 cut(s) 898
PspFI CCCAGC 2 cut(s) 143, 673
PspGI CCWGG 1 cut(s) 898
PspN4I GGNNCC 2 cut(s) 508, 830
PspPI GGNCC 1 cut(s) 771
RsaI GTAC 3 cut(s) 263, 671, 866
RsaNI GTAC 3 cut(s) 262, 670, 865
RseI CAYNNNNRTG 1 cut(s) 1016
SapI GCTCTTC 2 cut(s) 377, 795
SaqAI TTAA 3 cut(s) 120, 479, 816
SatI GCNGC 4 cut(s) 416, 643, 678, 681
Sau3AI GATC 4 cut(s) 269, 336, 784, 921
Sau96I GGNCC 1 cut(s) 771
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 900
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 4 cut(s) 456, 654, 1020, 1056
SmiMI CAYNNNNRTG 1 cut(s) 1016
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 8 cut(s) 39, 195, 215, 299, 572, 585, 603, 812
SsiI CCGC 3 cut(s) 79, 640, 681
SspI AATATT 2 cut(s) 332, 437
SspMI CTAG 1 cut(s) 1040
StyD4I CCNGG 1 cut(s) 898
StyI CCWWGG 2 cut(s) 393, 510
TaaI ACNGT 3 cut(s) 233, 484, 721
TaiI ACGT 4 cut(s) 19, 104, 323, 738
TaqI TCGA 3 cut(s) 55, 108, 339
TasI AATT 8 cut(s) 39, 195, 215, 299, 572, 585, 603, 812
TatI WGTACW 2 cut(s) 261, 864
TauI GCSGC 1 cut(s) 683
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 3 cut(s) 120, 479, 816
Tru9I TTAA 3 cut(s) 120, 479, 816
TscAI CASTG 2 cut(s) 724, 959
TseFI GTSAC 1 cut(s) 33
TseI GCWGC 3 cut(s) 415, 642, 677
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 5 cut(s) 39, 107, 313, 462, 850
TspGWI ACGGA 1 cut(s) 934
TspRI CASTG 2 cut(s) 724, 959
Van91I CCANNNNNTGG 1 cut(s) 516
XagI CCTNNNNNAGG 2 cut(s) 557, 903
XapI RAATTY 1 cut(s) 572
XceI RCATGY 1 cut(s) 478
XspI CTAG 1 cut(s) 1040
ZrmI AGTACT 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.