Rh6DG482300

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002267
Physical Location & Seq
Reverse (-)
64592974 .. 64594256
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG482300.1

Sequence Viewer

Length: 975 bp
ATGGAAACTTCAACCTACTCCTACATCTTGCTCTTCATTATCTTTCTTTTCCTCGAGAGTTATTTGCAGAAAAATAAGAAGAGATTGCCACCAAGCCCTGCTCTCTCTCTCCCCATAATAGGCCATCTCTATCTTTTTAAGAAACCCCTCCACAGAACACTTGCAAAGTTATCCGACAAATATGGTCCAATTGTATACATCAAATTTGGCTCCTGCCCTGTCATTCTTGTATCCTCCCCTTCTGCAGCTGAAGAATGCTTCACCAAGCACGATGTCGCTTTTGCAAACCGTCCAAAGCTGCTTGCCGGCAAACACCTTGGGTATAACTATACCACAGTTACCTGGGCTTCTTATGGCTCCCACTGGCGCAACTTGAGACGCATAGCTTCCCTTGAACTATTGTCATCCAACAGCCTTCAGATGTTTCATGGCATACGTGCAGATGAAATCAGGTCACTCGTTTGCCAGCTTTTTCGAGGCTGTAATGGTGGTGAGTTTCAGGGTGTAGAGATGAAGTCAAAGTTTTTTCAGCTAACTCTCAATGTTATAATGAGAATGGTTGCTGGCAAAAGATACTATGGGGAAGATATAGCAGATTTGGAGGAAGCTAAAATGTTTCAACAAATTGTTACAGAGGGGTTTCAATTGACTGGGGTTACTAACGTTGGAGATTTCATACCAGTTTTAAACTACGTAGGAGTAAGTAAGCTTGAGAAGAAGTTGATAATATTGCATAAGAAGAGGGATAAGTTCCTGCAAGATTTGATTGATCAACATAGAAAAATGCAGAGCGACTCTGCTTTGGAAAAGAAAAGCAAGACCATGGTGGATGTCATGTTGTCACTGCAAGGAACTGAAGCCGAATACTATACTGATGAAATCATAAGGGGCATGATGCATGTAAGTTCTCTAAGCCAAACTCTAAAGTCCAAGGTCAAGTACAATAGTTTCCAGCTTGAACATTATACTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

324

Amino Acids

37.11

Weight (kDa)

9.36

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 31 - 295 5.5e-28 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
AccI GTMKAC 1 cut(s) 195
AclI AACGTT 1 cut(s) 663
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 3 cut(s) 270, 401, 876
AfaI GTAC 1 cut(s) 941
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 5 cut(s) 12, 395, 620, 644, 959
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 8 cut(s) 248, 298, 386, 469, 532, 608, 709, 955
AluI AGCT 8 cut(s) 248, 298, 386, 469, 532, 608, 709, 955
Alw26I GTCTC 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 245, 298
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 253, 503
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 257, 285
BccI CCATC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 343
BciVI GTATCC 1 cut(s) 241
BclI TGATCA 1 cut(s) 769
BcoDI GTCTC 1 cut(s) 370
BfmI CTRYAG 1 cut(s) 243
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 2 cut(s) 246, 299
BlsI GCNGC 2 cut(s) 247, 300
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 211, 358
BmrFI CCNGG 1 cut(s) 343
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 1 cut(s) 885
BmuI ACTGGG 1 cut(s) 660
BpuEI CTTGAG 2 cut(s) 394, 731
BsaAI YACGTR 2 cut(s) 437, 694
BsaJI CCNNGG 4 cut(s) 316, 342, 822, 930
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 3 cut(s) 368, 655, 680
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 4 cut(s) 316, 342, 822, 930
BseGI GGATG 2 cut(s) 404, 835
BseLI CCNNNNNNNGG 1 cut(s) 119
BseNI ACTGG 3 cut(s) 368, 655, 680
BseXI GCAGC 2 cut(s) 257, 285
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 370
BsmBI CGTCTC 1 cut(s) 370
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 53
Bsp143I GATC 1 cut(s) 769
Bsp19I CCATGG 1 cut(s) 822
BspANI GGCC 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 211, 358
BspMAI CTGCAG 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 3 cut(s) 368, 655, 680
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 4 cut(s) 316, 342, 822, 930
BssMI GATC 1 cut(s) 769
BssNAI GTATAC 1 cut(s) 196
BssT1I CCWWGG 3 cut(s) 316, 822, 930
Bst1107I GTATAC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 290, 337
Bst6I CTCTTC 3 cut(s) 38, 74, 734
BstBAI YACGTR 2 cut(s) 437, 694
BstC8I GCNNGC 4 cut(s) 303, 307, 467, 565
BstDEI CTNAG 1 cut(s) 911
BstDSI CCRYGG 1 cut(s) 822
BstF5I GGATG 2 cut(s) 404, 835
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 1 cut(s) 772
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 1 cut(s) 769
BstNI CCWGG 1 cut(s) 343
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 243
BstSNI TACGTA 1 cut(s) 694
BstV1I GCAGC 2 cut(s) 257, 285
BstZ17I GTATAC 1 cut(s) 196
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 822
BtsCI GGATG 2 cut(s) 404, 835
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 2 cut(s) 361, 842
Cac8I GCNNGC 4 cut(s) 303, 307, 467, 565
CfoI GCGC 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 387
Csp6I GTAC 1 cut(s) 940
CviAII CATG 5 cut(s) 428, 823, 835, 892, 899
CviQI GTAC 1 cut(s) 940
DdeI CTNAG 1 cut(s) 911
DpnI GATC 1 cut(s) 771
DpnII GATC 1 cut(s) 769
DraI TTTAAA 1 cut(s) 687
Eam1104I CTCTTC 3 cut(s) 38, 74, 734
EarI CTCTTC 3 cut(s) 38, 74, 734
Eco105I TACGTA 1 cut(s) 694
Eco130I CCWWGG 3 cut(s) 316, 822, 930
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 3 cut(s) 270, 401, 876
Eco88I CYCGRG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 3 cut(s) 316, 822, 930
EcoT22I ATGCAT 1 cut(s) 900
ErhI CCWWGG 3 cut(s) 316, 822, 930
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 5 cut(s) 431, 826, 838, 895, 902
FatI CATG 5 cut(s) 427, 822, 834, 891, 898
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 246, 299
FokI GGATG 2 cut(s) 391, 842
Fsp4HI GCNGC 2 cut(s) 246, 299
GlaI GCGC 1 cut(s) 368
GluI GCNGC 2 cut(s) 246, 299
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 387
HhaI GCGC 1 cut(s) 369
Hin1II CATG 5 cut(s) 431, 826, 838, 895, 902
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 1 cut(s) 794
HpaII CCGG 1 cut(s) 306
HphI GGTGA 2 cut(s) 253, 503
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 175, 420
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 2 cut(s) 249, 425
HpyCH4III ACNGT 2 cut(s) 290, 337
HpyCH4IV ACGT 3 cut(s) 436, 663, 693
HpyF3I CTNAG 1 cut(s) 911
HpySE526I ACGT 3 cut(s) 436, 663, 693
Hsp92II CATG 5 cut(s) 431, 826, 838, 895, 902
HspAI GCGC 1 cut(s) 367
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 1 cut(s) 769
LguI GCTCTTC 1 cut(s) 38
LmnI GCTCC 2 cut(s) 215, 362
Lsp1109I GCAGC 2 cut(s) 257, 285
LweI GCATC 1 cut(s) 885
MaeII ACGT 3 cut(s) 436, 663, 693
MaeIII GTNAC 5 cut(s) 337, 453, 628, 655, 840
MalI GATC 1 cut(s) 771
MboI GATC 1 cut(s) 769
MboII GAAGA 6 cut(s) 25, 91, 263, 596, 727, 751
MfeI CAATTG 2 cut(s) 189, 644
MluCI AATT 4 cut(s) 189, 203, 624, 644
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 3 cut(s) 198, 432, 646
MnlI CCTC 7 cut(s) 62, 158, 244, 470, 595, 628, 735
Mph1103I ATGCAT 1 cut(s) 900
MroNI GCCGGC 1 cut(s) 305
MseI TTAA 2 cut(s) 138, 686
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 343
MunI CAATTG 2 cut(s) 189, 644
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 343
NaeI GCCGGC 1 cut(s) 307
NcoI CCATGG 1 cut(s) 822
NdeII GATC 1 cut(s) 769
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 5 cut(s) 431, 826, 838, 895, 902
NlaIV GGNNCC 2 cut(s) 211, 358
NmuCI GTSAC 2 cut(s) 453, 840
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 1 cut(s) 902
PaeR7I CTCGAG 1 cut(s) 53
PciSI GCTCTTC 1 cut(s) 38
PctI GAATGC 1 cut(s) 260
PdiI GCCGGC 1 cut(s) 307
PkrI GCNGC 2 cut(s) 247, 300
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
Ppu21I YACGTR 2 cut(s) 437, 694
PsiI TTATAA 1 cut(s) 548
Psp1406I AACGTT 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 211, 358
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 941
RsaNI GTAC 1 cut(s) 940
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 2 cut(s) 138, 686
SatI GCNGC 2 cut(s) 246, 299
Sau3AI GATC 1 cut(s) 769
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 1 cut(s) 343
SfaNI GCATC 1 cut(s) 885
SfcI CTRYAG 1 cut(s) 243
Sfr274I CTCGAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 53
SmlI CTYRAG 3 cut(s) 53, 373, 710
SmoI CTYRAG 3 cut(s) 53, 373, 710
SnaBI TACGTA 1 cut(s) 694
Sse9I AATT 4 cut(s) 189, 203, 624, 644
SspI AATATT 1 cut(s) 729
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 3 cut(s) 316, 822, 930
TaaI ACNGT 2 cut(s) 290, 337
TaiI ACGT 3 cut(s) 439, 666, 696
TaqI TCGA 2 cut(s) 54, 475
TasI AATT 4 cut(s) 189, 203, 624, 644
TatI WGTACW 1 cut(s) 939
Tru1I TTAA 2 cut(s) 138, 686
Tru9I TTAA 2 cut(s) 138, 686
TscAI CASTG 2 cut(s) 368, 849
TseFI GTSAC 2 cut(s) 453, 840
TseI GCWGC 2 cut(s) 245, 298
Tsp45I GTSAC 2 cut(s) 453, 840
TspDTI ATGAA 6 cut(s) 25, 416, 459, 527, 664, 891
TspRI CASTG 2 cut(s) 368, 849
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 902
XhoI CTCGAG 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.