Rmu_sc0040393.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040393.1
OG0002267
Physical Location & Seq
Reverse (-)
2 .. 1325
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040393.1_g000001.1.cds

Sequence Viewer

Length: 976 bp
atggaaacttcaacctactcctacatcttgctcttcatcatctttcttttcctcaagagttatttgcagaaaaataagaagagattgccaccaagccctgctctctctctccccataataggccatctctatctttttaagaaacccctccacagaacacttgcaaagttatccgacaaatatggtccaattgtatacatcaaatttggctcccgccctgtcattcttgtatcctccccttctgcagctgaggaatgcttcaccaagcacgatgtcgcttttgcaaaccgtccaaagctgcttgccggcaaacaccttgggtataactatactacagttacctgggcttcttatggctcccactggcgaaaattaagacgcatagcttcccttgaactattgtcatccagcagccttcagatgtttcatggcatacgtgcagatgaaatcaggtcactcgtttgccagctttttcgaggctgtaatggtggtgagtttcagggtgtagagatgaagtcaaagttttttcaactaactcttaatgttataatgagaatggttgctgggaaaagatactatggggaagatatagcagatttggaggaagctaaaatgtttcaacaaattgttacggagggttttcaattgactggggttactaacgttggagatttcataccagttttaaactacgttggagtaagtaagcttgagaagaagttgataatattgcataagaagagggataagttcctgcaagatttgattgatcaacatagaaaaatgcagagcgactctgctttggaaaagagaagcaagaccatggtggatgtcatgttgtcactgcaaggaactgaagccgaatactatactgatgaaatcataaggggcatgatgcatgttatgttaacagcaggaacagacacctcagctggaaccatggaatgggctctatcactattgctcaacaaccctc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

325

Amino Acids

36.98

Weight (kDa)

9.45

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 945
AccI GTMKAC 1 cut(s) 195
AciI CCGC 1 cut(s) 214
AclI AACGTT 1 cut(s) 663
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 2 cut(s) 401, 876
AfiI CCNNNNNNNGG 2 cut(s) 119, 945
AgsI TTSAA 5 cut(s) 12, 395, 530, 620, 644
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 7 cut(s) 248, 298, 386, 469, 608, 709, 932
AluI AGCT 7 cut(s) 248, 298, 386, 469, 608, 709, 932
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 3 cut(s) 245, 298, 411
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 253, 503
AvaII GGWCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 952
BbvCI CCTCAGC 2 cut(s) 249, 928
BbvI GCAGC 3 cut(s) 257, 285, 423
BccI CCATC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 343
BciVI GTATCC 1 cut(s) 241
BclI TGATCA 1 cut(s) 769
BfmI CTRYAG 2 cut(s) 243, 333
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 3 cut(s) 246, 299, 412
BlsI GCNGC 3 cut(s) 247, 300, 413
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 3 cut(s) 211, 358, 937
BmrFI CCNGG 1 cut(s) 343
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 1 cut(s) 885
BmuI ACTGGG 1 cut(s) 660
Bpu10I CCTNAGC 2 cut(s) 249, 928
BpuEI CTTGAG 2 cut(s) 38, 731
BsaAI YACGTR 1 cut(s) 437
BsaJI CCNNGG 4 cut(s) 316, 342, 822, 939
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 945
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 3 cut(s) 368, 655, 680
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 4 cut(s) 316, 342, 822, 939
BseGI GGATG 2 cut(s) 404, 835
BseLI CCNNNNNNNGG 2 cut(s) 119, 945
BseMII CTCAG 2 cut(s) 240, 942
BseNI ACTGG 3 cut(s) 368, 655, 680
BseXI GCAGC 3 cut(s) 257, 285, 423
BseYI CCCAGC 1 cut(s) 563
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 119, 945
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 952
Bsp143I GATC 1 cut(s) 769
Bsp19I CCATGG 2 cut(s) 822, 939
BspACI CCGC 1 cut(s) 214
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 2 cut(s) 241, 941
BspLI GGNNCC 3 cut(s) 211, 358, 937
BspMAI CTGCAG 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 3 cut(s) 368, 655, 680
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 4 cut(s) 316, 342, 822, 939
BssMI GATC 1 cut(s) 769
BssNAI GTATAC 1 cut(s) 196
BssT1I CCWWGG 3 cut(s) 316, 822, 939
Bst1107I GTATAC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 290, 337
Bst6I CTCTTC 3 cut(s) 38, 74, 734
BstBAI YACGTR 1 cut(s) 437
BstC8I GCNNGC 3 cut(s) 303, 307, 467
BstDEI CTNAG 2 cut(s) 249, 928
BstDSI CCRYGG 2 cut(s) 822, 939
BstF5I GGATG 2 cut(s) 404, 835
BstKTI GATC 1 cut(s) 772
BstMBI GATC 1 cut(s) 769
BstNI CCWGG 1 cut(s) 343
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 2 cut(s) 243, 333
BstV1I GCAGC 3 cut(s) 257, 285, 423
BstZ17I GTATAC 1 cut(s) 196
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 2 cut(s) 822, 939
BtsCI GGATG 2 cut(s) 404, 835
BtsI GCAGTG 1 cut(s) 842
BtsIMutI CAGTG 2 cut(s) 361, 842
Cac8I GCNNGC 3 cut(s) 303, 307, 467
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 387
CviAII CATG 6 cut(s) 428, 823, 835, 892, 899, 940
DdeI CTNAG 2 cut(s) 249, 928
DpnI GATC 1 cut(s) 771
DpnII GATC 1 cut(s) 769
DraI TTTAAA 1 cut(s) 687
Eam1104I CTCTTC 3 cut(s) 38, 74, 734
EarI CTCTTC 3 cut(s) 38, 74, 734
Eco130I CCWWGG 3 cut(s) 316, 822, 939
Eco24I GRGCYC 1 cut(s) 952
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 2 cut(s) 401, 876
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 3 cut(s) 316, 822, 939
EcoT22I ATGCAT 1 cut(s) 900
EcoT38I GRGCYC 1 cut(s) 952
ErhI CCWWGG 3 cut(s) 316, 822, 939
FaeI CATG 6 cut(s) 431, 826, 838, 895, 902, 943
FatI CATG 6 cut(s) 427, 822, 834, 891, 898, 939
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 3 cut(s) 246, 299, 412
FokI GGATG 2 cut(s) 391, 842
FriOI GRGCYC 1 cut(s) 952
Fsp4HI GCNGC 3 cut(s) 246, 299, 412
GluI GCNGC 3 cut(s) 246, 299, 412
GsaI CCCAGC 1 cut(s) 567
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 387
Hin1II CATG 6 cut(s) 431, 826, 838, 895, 902, 943
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 1 cut(s) 794
HpaI GTTAAC 1 cut(s) 909
HpaII CCGG 1 cut(s) 306
HphI GGTGA 2 cut(s) 253, 503
Hpy166II GTNNAC 2 cut(s) 196, 909
Hpy188I TCNGA 2 cut(s) 175, 420
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 196, 909
HpyAV CCTTC 2 cut(s) 249, 425
HpyCH4III ACNGT 2 cut(s) 290, 337
HpyCH4IV ACGT 3 cut(s) 436, 663, 693
HpyF3I CTNAG 2 cut(s) 249, 928
HpySE526I ACGT 3 cut(s) 436, 663, 693
Hsp92II CATG 6 cut(s) 431, 826, 838, 895, 902, 943
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 769
KspAI GTTAAC 1 cut(s) 909
Kzo9I GATC 1 cut(s) 769
LguI GCTCTTC 1 cut(s) 38
LmnI GCTCC 2 cut(s) 215, 362
Lsp1109I GCAGC 3 cut(s) 257, 285, 423
LweI GCATC 1 cut(s) 885
MaeII ACGT 3 cut(s) 436, 663, 693
MaeIII GTNAC 5 cut(s) 337, 453, 628, 655, 840
MalI GATC 1 cut(s) 771
MboI GATC 1 cut(s) 769
MboII GAAGA 5 cut(s) 25, 91, 596, 727, 751
MfeI CAATTG 2 cut(s) 189, 644
MhlI GDGCHC 1 cut(s) 952
MluCI AATT 5 cut(s) 189, 203, 371, 624, 644
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 3 cut(s) 198, 646, 676
MnlI CCTC 9 cut(s) 62, 158, 244, 244, 470, 595, 628, 735, 937
Mph1103I ATGCAT 1 cut(s) 900
MroNI GCCGGC 1 cut(s) 305
MseI TTAA 5 cut(s) 138, 374, 540, 686, 908
MspA1I CMGCKG 2 cut(s) 248, 932
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 343
MunI CAATTG 2 cut(s) 189, 644
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 343
NaeI GCCGGC 1 cut(s) 307
NcoI CCATGG 2 cut(s) 822, 939
NdeII GATC 1 cut(s) 769
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 6 cut(s) 431, 826, 838, 895, 902, 943
NlaIV GGNNCC 3 cut(s) 211, 358, 937
NmuCI GTSAC 2 cut(s) 453, 840
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 1 cut(s) 902
PciSI GCTCTTC 1 cut(s) 38
PctI GAATGC 1 cut(s) 260
PdiI GCCGGC 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 945
PkrI GCNGC 3 cut(s) 247, 300, 413
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
Ppu21I YACGTR 1 cut(s) 437
PsiI TTATAA 1 cut(s) 548
Psp1406I AACGTT 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 341
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 3 cut(s) 211, 358, 937
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 247
PvuII CAGCTG 2 cut(s) 248, 932
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 5 cut(s) 138, 374, 540, 686, 908
SatI GCNGC 3 cut(s) 246, 299, 412
Sau3AI GATC 1 cut(s) 769
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 1 cut(s) 343
SduI GDGCHC 1 cut(s) 952
SfaNI GCATC 1 cut(s) 885
SfcI CTRYAG 2 cut(s) 243, 333
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 53, 710
SmoI CTYRAG 2 cut(s) 53, 710
Sse9I AATT 5 cut(s) 189, 203, 371, 624, 644
SsiI CCGC 1 cut(s) 214
SspI AATATT 1 cut(s) 729
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 3 cut(s) 316, 822, 939
TaaI ACNGT 2 cut(s) 290, 337
TaiI ACGT 3 cut(s) 439, 666, 696
TaqI TCGA 1 cut(s) 475
TasI AATT 5 cut(s) 189, 203, 371, 624, 644
Tru1I TTAA 5 cut(s) 138, 374, 540, 686, 908
Tru9I TTAA 5 cut(s) 138, 374, 540, 686, 908
TscAI CASTG 2 cut(s) 368, 849
TseFI GTSAC 2 cut(s) 453, 840
TseI GCWGC 3 cut(s) 245, 298, 411
Tsp45I GTSAC 2 cut(s) 453, 840
TspDTI ATGAA 6 cut(s) 25, 416, 459, 527, 664, 891
TspGWI ACGGA 1 cut(s) 647
TspRI CASTG 2 cut(s) 368, 849
Van91I CCANNNNNTGG 1 cut(s) 945
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 203
XceI RCATGY 1 cut(s) 902
XmiI GTMKAC 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.