Rw6G041950

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002267
Physical Location & Seq
Reverse (-)
65577301 .. 65578749
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G041950.1

Sequence Viewer

Length: 1101 bp
ATGTTTCATGGCATACGTGCAGATGAAATCAGGTCACTCGTTTGCCAGCTTTTTCGAGGCTGTAATGGTGGTGAGTTTCAGGGTGTAGAGATGAAGTCAAAGTTTTTTCAACTAACTCTTAATGTTATAATGAGAATGGTTGCTGGGAAAAGATACTATGGGGAAGATATAGCAGATTTGGAGGAAGCTAAAATGTTTCAACAAATTGTTACAGAGGGTTTTCAATTGACTGGGGTTACTAACGTTGGAGATTTCATACCAGTTTTAAACTACGTTGGAGTAAGTAAGCTTGAGAAGAAGTTGATAATATTGCATAAGAAGAGGGATAAGTTCCTGCAAGATTTGATTGATCAACATAGAAAAATGCAGAGCGACTCTGCTTTGGAAAAGAGAAGCAAGACCATGGTGGATGTCATGTTGTCACTGCAAGGAACTGAAGCCGAATACTATACTGATGAAATCATAAGGGGCATGATGCATGTTATGTTAACAGCAGGAACAGACACCTCAGCTGGAACCATGGAATGGGCTCTATCACTATTGCTCAACAACCCTCAATCACTTGCAAAGGCCCAGACTGAAATTGATAACCACATTGGAGAAGGCAGACTAATTAAGGAGTCAGACCTTGCCAAGCTTCCCTATCTTAGTAGCATCATATATGAGACCCTCCGAATGTACCCAGCAGCCCCACTTCTGGCGCCCCATGAGGCATCGGATGACTGTACCTTGGCTGGCTTCCATGTTCCACGTGGAACAATGCTGTTGGTGAACGCATGGGCCATACAGAATGATCCTAAGTTGTGGGCAGAACCTGAACAATTTAAGCCAGAGAGGTTCCAAAATGTACAAGGAGAAAGAGATGGTTTCATGTGGTTGCCATTTGGGACAGGAAGGAGAGGCTGTCCTGGTGAAGGCTTAGCAAACCGGATTGTAGGGCTGGCCTTAGGGTCACTGATTCAGTGCTTTGAGTGGGAGAGACCTAGTGAGGAAATGATTGATATGAGTATAGGTACTGGGCTCACCATGCCTAAAGCTCAACCGTTACTAGCAAAATGCAGGCCACGCCCAACAATGCTGGCCTTACTTTCTCAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

366

Amino Acids

41.14

Weight (kDa)

5.89

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 10 - 346 8.1e-77 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 700
AccB7I CCANNNNNTGG 1 cut(s) 525
AclI AACGTT 1 cut(s) 243
AclWI GGATC 1 cut(s) 788
AcuI CTGAAG 1 cut(s) 456
AcvI CACGTG 1 cut(s) 752
AcyI GRCGYC 1 cut(s) 701
AfaI GTAC 4 cut(s) 680, 727, 849, 1015
AfiI CCNNNNNNNGG 3 cut(s) 525, 697, 914
AgsI TTSAA 3 cut(s) 110, 200, 224
AjnI CCWGG 1 cut(s) 907
AluBI AGCT 6 cut(s) 49, 188, 289, 512, 637, 1037
AluI AGCT 6 cut(s) 49, 188, 289, 512, 637, 1037
Alw26I GTCTC 2 cut(s) 659, 973
AlwI GGATC 1 cut(s) 788
AlwNI CAGNNNCTG 1 cut(s) 815
AoxI GGCC 5 cut(s) 570, 780, 942, 1061, 1080
ApeKI GCWGC 1 cut(s) 686
AspLEI GCGC 1 cut(s) 703
AspS9I GGNCC 2 cut(s) 571, 780
AsuHPI GGTGA 4 cut(s) 83, 781, 923, 1015
AxyI CCTNAGG 1 cut(s) 946
BanI GGYRCC 1 cut(s) 700
BanII GRGCYC 2 cut(s) 532, 1023
BbrPI CACGTG 1 cut(s) 752
BbvCI CCTCAGC 1 cut(s) 508
BbvI GCAGC 1 cut(s) 698
BccI CCATC 1 cut(s) 857
BciT130I CCWGG 1 cut(s) 909
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 659, 973
BfaI CTAG 2 cut(s) 984, 1049
BfoI RGCGCY 1 cut(s) 704
BisI GCNGC 1 cut(s) 687
BlpI GCTNAGC 1 cut(s) 919
BlsI GCNGC 1 cut(s) 688
Bme1390I CCNGG 1 cut(s) 909
BmgT120I GGNCC 2 cut(s) 571, 780
BmiI GGNNCC 3 cut(s) 517, 702, 839
BmrFI CCNGG 1 cut(s) 909
BmrI ACTGGG 2 cut(s) 240, 1026
BmsI GCATC 3 cut(s) 465, 663, 722
BmuI ACTGGG 2 cut(s) 240, 1026
Bpu10I CCTNAGC 1 cut(s) 508
Bpu1102I GCTNAGC 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 311
BsaAI YACGTR 2 cut(s) 17, 752
BsaHI GRCGYC 1 cut(s) 701
BsaI GGTCTC 2 cut(s) 659, 973
BsaJI CCNNGG 3 cut(s) 402, 519, 729
BsaWI WCCGGW 1 cut(s) 927
BsaXI ACNNNNNCTCC 2 cut(s) 889, 919
Bsc4I CCNNNNNNNGG 3 cut(s) 525, 697, 914
Bse1I ACTGG 3 cut(s) 235, 260, 1021
Bse21I CCTNAGG 1 cut(s) 946
BseBI CCWGG 1 cut(s) 909
BseDI CCNNGG 3 cut(s) 402, 519, 729
BseGI GGATG 2 cut(s) 415, 724
BseLI CCNNNNNNNGG 3 cut(s) 525, 697, 914
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 3 cut(s) 235, 260, 1021
BseXI GCAGC 1 cut(s) 698
BseYI CCCAGC 2 cut(s) 143, 682
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 5 cut(s) 572, 782, 944, 1063, 1082
BshNI GGYRCC 1 cut(s) 700
BsiSI CCGG 1 cut(s) 928
BslFI GGGAC 1 cut(s) 901
BslI CCNNNNNNNGG 3 cut(s) 525, 697, 914
BsmAI GTCTC 2 cut(s) 659, 973
BsmFI GGGAC 1 cut(s) 901
BsnI GGCC 5 cut(s) 572, 782, 944, 1063, 1082
Bso31I GGTCTC 2 cut(s) 659, 973
Bsp1286I GDGCHC 2 cut(s) 532, 1023
Bsp1407I TGTACA 1 cut(s) 847
Bsp143I GATC 2 cut(s) 349, 793
Bsp1720I GCTNAGC 1 cut(s) 919
Bsp19I CCATGG 2 cut(s) 402, 519
BspANI GGCC 5 cut(s) 572, 782, 944, 1063, 1082
BspCNI CTCAG 1 cut(s) 521
BspLI GGNNCC 3 cut(s) 517, 702, 839
BspPI GGATC 1 cut(s) 788
BspT107I GGYRCC 1 cut(s) 700
BspTNI GGTCTC 2 cut(s) 659, 973
BsrGI TGTACA 1 cut(s) 847
BsrI ACTGG 3 cut(s) 235, 260, 1021
BssECI CCNNGG 3 cut(s) 402, 519, 729
BssMI GATC 2 cut(s) 349, 793
BssNI GRCGYC 1 cut(s) 701
BssT1I CCWWGG 3 cut(s) 402, 519, 729
Bst2UI CCWGG 1 cut(s) 909
Bst4CI ACNGT 2 cut(s) 725, 1044
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 847
BstBAI YACGTR 2 cut(s) 17, 752
BstC8I GCNNGC 5 cut(s) 47, 736, 942, 1061, 1080
BstDEI CTNAG 5 cut(s) 508, 647, 798, 919, 946
BstDSI CCRYGG 2 cut(s) 402, 519
BstENI CCTNNNNNAGG 1 cut(s) 912
BstF5I GGATG 2 cut(s) 415, 724
BstH2I RGCGCY 1 cut(s) 704
BstHHI GCGC 1 cut(s) 703
BstKTI GATC 2 cut(s) 352, 796
BstMAI GTCTC 2 cut(s) 659, 973
BstMBI GATC 2 cut(s) 349, 793
BstMWI GCNNNNNNNGC 2 cut(s) 1027, 1065
BstNI CCWGG 1 cut(s) 909
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 907
BstV1I GCAGC 1 cut(s) 698
Bsu36I CCTNAGG 1 cut(s) 946
BsuRI GGCC 5 cut(s) 572, 782, 944, 1063, 1082
BtgI CCRYGG 2 cut(s) 402, 519
BtsCI GGATG 2 cut(s) 415, 724
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 3 cut(s) 422, 953, 968
Cac8I GCNNGC 5 cut(s) 47, 736, 942, 1061, 1080
CaiI CAGNNNCTG 1 cut(s) 815
CfoI GCGC 1 cut(s) 703
Cfr13I GGNCC 2 cut(s) 571, 780
Csp6I GTAC 4 cut(s) 679, 726, 848, 1014
CviQI GTAC 4 cut(s) 679, 726, 848, 1014
DdeI CTNAG 5 cut(s) 508, 647, 798, 919, 946
DinI GGCGCC 1 cut(s) 702
DpnI GATC 2 cut(s) 351, 795
DpnII GATC 2 cut(s) 349, 793
DraI TTTAAA 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
Eco130I CCWWGG 3 cut(s) 402, 519, 729
Eco24I GRGCYC 2 cut(s) 532, 1023
Eco31I GGTCTC 2 cut(s) 659, 973
Eco57I CTGAAG 1 cut(s) 456
Eco72I CACGTG 1 cut(s) 752
Eco81I CCTNAGG 1 cut(s) 946
EcoNI CCTNNNNNAGG 1 cut(s) 912
EcoRII CCWGG 1 cut(s) 907
EcoT14I CCWWGG 3 cut(s) 402, 519, 729
EcoT22I ATGCAT 1 cut(s) 480
EcoT38I GRGCYC 2 cut(s) 532, 1023
EgeI GGCGCC 1 cut(s) 702
EheI GGCGCC 1 cut(s) 702
ErhI CCWWGG 3 cut(s) 402, 519, 729
FaqI GGGAC 1 cut(s) 901
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 687
FokI GGATG 2 cut(s) 422, 731
FriOI GRGCYC 2 cut(s) 532, 1023
Fsp4HI GCNGC 1 cut(s) 687
FspBI CTAG 2 cut(s) 984, 1049
GlaI GCGC 1 cut(s) 702
GluI GCNGC 1 cut(s) 687
GsaI CCCAGC 2 cut(s) 147, 686
HaeII RGCGCY 1 cut(s) 704
HaeIII GGCC 5 cut(s) 572, 782, 944, 1063, 1082
HapII CCGG 1 cut(s) 928
HhaI GCGC 1 cut(s) 703
Hin1I GRCGYC 1 cut(s) 701
Hin6I GCGC 1 cut(s) 701
HinP1I GCGC 1 cut(s) 701
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HindIII AAGCTT 2 cut(s) 287, 635
HinfI GANTC 3 cut(s) 374, 620, 958
HpaI GTTAAC 1 cut(s) 489
HpaII CCGG 1 cut(s) 928
HphI GGTGA 4 cut(s) 83, 781, 923, 1015
Hpy166II GTNNAC 2 cut(s) 489, 772
Hpy188I TCNGA 3 cut(s) 625, 674, 718
Hpy8I GTNNAC 2 cut(s) 489, 772
HpyAV CCTTC 3 cut(s) 596, 888, 908
HpyCH4III ACNGT 2 cut(s) 725, 1044
HpyCH4IV ACGT 4 cut(s) 16, 243, 273, 751
HpyCH4V TGCA 8 cut(s) 20, 313, 337, 367, 427, 478, 566, 1059
HpyF10VI GCNNNNNNNGC 2 cut(s) 1027, 1065
HpyF3I CTNAG 5 cut(s) 508, 647, 798, 919, 946
HpySE526I ACGT 4 cut(s) 16, 243, 273, 751
Hsp92I GRCGYC 1 cut(s) 701
HspAI GCGC 1 cut(s) 701
KasI GGCGCC 1 cut(s) 700
Ksp22I TGATCA 1 cut(s) 349
KspAI GTTAAC 1 cut(s) 489
Kzo9I GATC 2 cut(s) 349, 793
Lsp1109I GCAGC 1 cut(s) 698
LweI GCATC 3 cut(s) 465, 663, 722
MaeI CTAG 2 cut(s) 984, 1049
MaeII ACGT 4 cut(s) 16, 243, 273, 751
MaeIII GTNAC 6 cut(s) 33, 208, 235, 420, 951, 1044
MalI GATC 2 cut(s) 351, 795
MboI GATC 2 cut(s) 349, 793
MboII GAAGA 3 cut(s) 176, 307, 331
MfeI CAATTG 1 cut(s) 224
MhlI GDGCHC 2 cut(s) 532, 1023
MluCI AATT 5 cut(s) 204, 224, 582, 612, 821
Mly113I GGCGCC 1 cut(s) 701
MlyI GAGTC 2 cut(s) 368, 629
MmeI TCCRAC 2 cut(s) 226, 256
Mph1103I ATGCAT 1 cut(s) 480
MseI TTAA 5 cut(s) 120, 266, 488, 615, 825
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 1 cut(s) 928
MspR9I CCNGG 1 cut(s) 909
MunI CAATTG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 909
MwoI GCNNNNNNNGC 2 cut(s) 1027, 1065
NarI GGCGCC 1 cut(s) 701
NcoI CCATGG 2 cut(s) 402, 519
NdeII GATC 2 cut(s) 349, 793
NlaIV GGNNCC 3 cut(s) 517, 702, 839
NmuCI GTSAC 3 cut(s) 33, 420, 951
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 1 cut(s) 482
PfeI GAWTC 1 cut(s) 958
PflMI CCANNNNNTGG 1 cut(s) 525
PkrI GCNGC 1 cut(s) 688
PleI GAGTC 2 cut(s) 368, 628
PluTI GGCGCC 1 cut(s) 704
PmaCI CACGTG 1 cut(s) 752
PmlI CACGTG 1 cut(s) 752
PpsI GAGTC 2 cut(s) 368, 628
Ppu21I YACGTR 2 cut(s) 17, 752
PsiI TTATAA 1 cut(s) 128
Psp1406I AACGTT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 907
PspCI CACGTG 1 cut(s) 752
PspFI CCCAGC 2 cut(s) 143, 682
PspGI CCWGG 1 cut(s) 907
PspN4I GGNNCC 3 cut(s) 517, 702, 839
PspPI GGNCC 2 cut(s) 571, 780
PstNI CAGNNNCTG 1 cut(s) 815
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 4 cut(s) 680, 727, 849, 1015
RsaNI GTAC 4 cut(s) 679, 726, 848, 1014
SaqAI TTAA 5 cut(s) 120, 266, 488, 615, 825
SatI GCNGC 1 cut(s) 687
Sau3AI GATC 2 cut(s) 349, 793
Sau96I GGNCC 2 cut(s) 571, 780
SchI GAGTC 2 cut(s) 368, 629
ScrFI CCNGG 1 cut(s) 909
SduI GDGCHC 2 cut(s) 532, 1023
SfaNI GCATC 3 cut(s) 465, 663, 722
SfoI GGCGCC 1 cut(s) 702
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 5 cut(s) 204, 224, 582, 612, 821
SspDI GGCGCC 1 cut(s) 700
SspI AATATT 1 cut(s) 309
SspMI CTAG 2 cut(s) 984, 1049
StyD4I CCNGG 1 cut(s) 907
StyI CCWWGG 3 cut(s) 402, 519, 729
TaaI ACNGT 2 cut(s) 725, 1044
TaiI ACGT 4 cut(s) 19, 246, 276, 754
TaqI TCGA 1 cut(s) 55
TasI AATT 5 cut(s) 204, 224, 582, 612, 821
TatI WGTACW 1 cut(s) 847
TfiI GAWTC 1 cut(s) 958
Tru1I TTAA 5 cut(s) 120, 266, 488, 615, 825
Tru9I TTAA 5 cut(s) 120, 266, 488, 615, 825
TscAI CASTG 3 cut(s) 429, 960, 968
TseFI GTSAC 3 cut(s) 33, 420, 951
TseI GCWGC 1 cut(s) 686
Tsp45I GTSAC 3 cut(s) 33, 420, 951
TspDTI ATGAA 5 cut(s) 39, 107, 244, 471, 859
TspRI CASTG 3 cut(s) 429, 960, 968
Van91I CCANNNNNTGG 1 cut(s) 525
XagI CCTNNNNNAGG 1 cut(s) 912
XceI RCATGY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XspI CTAG 2 cut(s) 984, 1049
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.