Rh6BG491100

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002267
Physical Location & Seq
Forward (+)
69458380 .. 69459257
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG491100.1

Sequence Viewer

Length: 621 bp
ATGAAGTCGACGTTTTTTCAGCTGACTCTTAATGTTATCATGAGGATGATTGCTGGAAAAAGATACTATGGTGAAGACAGGACAGGATTGGAGGAAGCTAAGAGGTTTGAGCAGATTGTGGTAGAGACATTTCAATTGAGTAGAGCTACTAACATTGGAGATTTTGTACCAGTTTTGAAATATGTTGGAGCAAACGGGCTTGAAAGAAAGTTGTTGATATTGCAAAAGAAGAGGGACAAGTTCATGCAAGATTTGATTGAAGAACATAGAAAAGGGCAGAGTGGCTCTGTTTCTGAACAGAGGAGCAAGACCATGGTGGATGTGTTGCTGTCACTGCAAGAAACTGAACCTGAATACTACACTGATGAAATCATAAGAGGCCTGATGCAAGTGATGTTATCAGCAGGAACAGATACCTCAGCTGGAACCATGGAATGGGGCTTTTCACTTTTGCTCAACAACCCAGAAGCCCTAGCAAAAGCACAGACAGAAATTGATGTCCAAATTGGGCAAACCAGGCTCATAGAGGAAGCAGACCTTGCCAACCTTCCCTATCTCCATGGCATCATAAACGAGACCCTCAGAATGTACCCCAGCAGCCCCACTTCTAGTACCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

206

Amino Acids

23.32

Weight (kDa)

5.23

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 202 5.8e-35 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 435
AccI GTMKAC 1 cut(s) 8
AfaI GTAC 3 cut(s) 168, 590, 613
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 4 cut(s) 134, 178, 203, 260
AjnI CCWGG 1 cut(s) 515
AluBI AGCT 4 cut(s) 22, 98, 146, 422
AluI AGCT 4 cut(s) 22, 98, 146, 422
Alw26I GTCTC 2 cut(s) 119, 569
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 597
AsuHPI GGTGA 1 cut(s) 83
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BbsI GAAGAC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 418
BbvI GCAGC 1 cut(s) 609
BciT130I CCWGG 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 119, 569
BfaI CTAG 2 cut(s) 473, 609
BisI GCNGC 1 cut(s) 598
BlsI GCNGC 1 cut(s) 599
Bme1390I CCNGG 1 cut(s) 517
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 1 cut(s) 517
BmsI GCATC 2 cut(s) 375, 573
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 418
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 3 cut(s) 312, 429, 559
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 517
BseDI CCNNGG 3 cut(s) 312, 429, 559
BseGI GGATG 2 cut(s) 51, 325
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMII CTCAG 2 cut(s) 432, 595
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 609
BseYI CCCAGC 1 cut(s) 593
BshFI GGCC 1 cut(s) 381
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 435
BsmAI GTCTC 2 cut(s) 119, 569
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 381
Bso31I GGTCTC 1 cut(s) 569
Bsp19I CCATGG 3 cut(s) 312, 429, 559
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 2 cut(s) 431, 594
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 569
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 3 cut(s) 312, 429, 559
BssT1I CCWWGG 3 cut(s) 312, 429, 559
Bst2UI CCWGG 1 cut(s) 517
Bst6I CTCTTC 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 539
BstDEI CTNAG 3 cut(s) 99, 418, 581
BstDSI CCRYGG 3 cut(s) 312, 429, 559
BstF5I GGATG 2 cut(s) 51, 325
BstMAI GTCTC 2 cut(s) 119, 569
BstMWI GCNNNNNNNGC 3 cut(s) 334, 517, 539
BstNI CCWGG 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 515
BstV1I GCAGC 1 cut(s) 609
BstV2I GAAGAC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 3 cut(s) 312, 429, 559
BtsCI GGATG 2 cut(s) 51, 325
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 2 cut(s) 332, 360
CciI TCATGA 1 cut(s) 39
Csp6I GTAC 3 cut(s) 167, 589, 612
CviAII CATG 6 cut(s) 40, 244, 313, 430, 560, 618
CviQI GTAC 3 cut(s) 167, 589, 612
DdeI CTNAG 3 cut(s) 99, 418, 581
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 3 cut(s) 312, 429, 559
Eco147I AGGCCT 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 515
EcoT14I CCWWGG 3 cut(s) 312, 429, 559
ErhI CCWWGG 3 cut(s) 312, 429, 559
FaeI CATG 6 cut(s) 43, 247, 316, 433, 563, 621
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FaqI GGGAC 1 cut(s) 248
FatI CATG 6 cut(s) 39, 243, 312, 429, 559, 617
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 598
FokI GGATG 2 cut(s) 58, 332
Fsp4HI GCNGC 1 cut(s) 598
FspBI CTAG 2 cut(s) 473, 609
GluI GCNGC 1 cut(s) 598
GsaI CCCAGC 1 cut(s) 597
HaeIII GGCC 1 cut(s) 381
Hin1II CATG 6 cut(s) 43, 247, 316, 433, 563, 621
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 295, 584
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 557
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 4 cut(s) 223, 247, 337, 388
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 517, 539
HpyF3I CTNAG 3 cut(s) 99, 418, 581
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 6 cut(s) 43, 247, 316, 433, 563, 621
LmnI GCTCC 2 cut(s) 188, 303
Lsp1109I GCAGC 1 cut(s) 609
LweI GCATC 2 cut(s) 375, 573
MaeI CTAG 2 cut(s) 473, 609
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 330
MboII GAAGA 3 cut(s) 86, 241, 272
MfeI CAATTG 1 cut(s) 134
MluCI AATT 3 cut(s) 134, 492, 504
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 9 cut(s) 36, 85, 96, 225, 294, 371, 427, 520, 590
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 2 cut(s) 22, 422
MspR9I CCNGG 1 cut(s) 517
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 517
MwoI GCNNNNNNNGC 3 cut(s) 334, 517, 539
NcoI CCATGG 3 cut(s) 312, 429, 559
NlaIII CATG 6 cut(s) 43, 247, 316, 433, 563, 621
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 330
PagI TCATGA 1 cut(s) 39
PceI AGGCCT 1 cut(s) 381
PflMI CCANNNNNTGG 1 cut(s) 435
PkrI GCNGC 1 cut(s) 599
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 515
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 427
PvuII CAGCTG 2 cut(s) 22, 422
RsaI GTAC 3 cut(s) 168, 590, 613
RsaNI GTAC 3 cut(s) 167, 589, 612
RseI CAYNNNNRTG 1 cut(s) 44
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 598
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 517
SfaNI GCATC 2 cut(s) 375, 573
SmiMI CAYNNNNRTG 1 cut(s) 44
Sse9I AATT 3 cut(s) 134, 492, 504
SseBI AGGCCT 1 cut(s) 381
SspMI CTAG 2 cut(s) 473, 609
StuI AGGCCT 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 515
StyI CCWWGG 3 cut(s) 312, 429, 559
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 8
TasI AATT 3 cut(s) 134, 492, 504
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 2 cut(s) 339, 367
TseFI GTSAC 1 cut(s) 330
TseI GCWGC 1 cut(s) 597
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 3 cut(s) 17, 232, 381
TspRI CASTG 2 cut(s) 339, 367
Van91I CCANNNNNTGG 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 2 cut(s) 473, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.