Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8367281.1

Orthogroup ID

OG0002267

Physical Location & Seq

Genomic Coordinates Forward (+)

103 .. 1077

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8367281.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggaaacttcaacctactcctacatcttgctcttcatcatctttcttttcctcaagagttatttgcagaaaaataagaagagattgccaccaagccctgctctctctctccccataataggccatctctatctttttaagaaacccctccacagaacacttgcaaagttatccgacaaatatggtccaattgtatacatcaaatttggctcccgccctgtcattcttgtatcctccccttctgcagctgaggaatgcttcaccaagcacgacgtcgcttttgcaaaccgtccaaagctgcttgccggcaaacaccttgggtataactatactacagttacctgggcttcttatggctcccactggcgaaaattaagacgcatagcttcccttgaactattgtcatccagcagccttcagatgtttcatggcatacgtgcagatgaaatcaggtcactcgtttgccagctttttcgaggctgtaatggtggtgagtttcagggtgtagagatgaagtcaaagttttttcaactaactcttaatgttataatgagaatggttgctgggaaaagatactatggggaagatatagcagatttggaggaagctaaaatgtttcaacaaattgttacggagggttttcaattgactggggttactaacgttggagatttcataccagttttaaactacgttggagtaagtaagcttgagaagaagttgataatattgcataagaagagggataagttcctgcaagatttgattgatcaacatagagaaatgcagagcgactctgctttggaaaagagaagcaagaccatggtggatgtcatgttgtcactgcaaggaactgaagccgaatactatactgatgaaatcataaggggcatgatgcatgtaagttctctaagccaaactctaaagtccaaggtcaagtacaatagtttccagcttgaacattatactttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

324

Amino Acids

37.18

Weight (kDa)

9.51

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33451 FvH4_2g33470 FvH4_2g33471 FvH4_2g33490
malus_domestica	MD08G1090000.v1.1 MD15G1074600.v1.1 MD15G1074800.v1.1
prunus_persica	Prupe.1G427100_v2.0.a1 Prupe.1G427300_v2.0.a1
pyrus_communis	pycom15g06960 pycom15g06970
rosa_chinensis	RchiOBHm_Chr6g0309031 RchiOBHm_Chr6g0309071
rosa_laevigata	RLG00000010592 RLG00000010595 RLG00000010596
rosa_multiflora	Rmu_co8367281.1_g000001 Rmu_co8411305.1_g000001 Rmu_sc0012331.1_g000004 Rmu_sc0012331.1_g000005 Rmu_sc0012331.1_g000007 Rmu_sc0019440.1_g000001 Rmu_sc0034731.1_g000001 Rmu_sc0040393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159670 Rroxscaffold_7G00159710 Rroxscaffold_7G00159720 Rroxscaffold_7G00159730
rosa_rugosa	Rorug06G0369400 Rorug07G0309400.1
rosa_samantha	Rh6AG481800 Rh6AG481900 Rh6AG482200 Rh6BG490800 Rh6BG491100 Rh6DG482300 Rh6DG482400 Rh6DG482500 Rh7BG435000 Rh7BG435400
rosa_wichuraiana	Rw6G041950 Rw6G041960 Rw6G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	548
AatII	GACGTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	1 cut(s)	214
AclI	AACGTT	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	2 cut(s)	401, 876
AcyI	GRCGYC	1 cut(s)	273
AfaI	GTAC	1 cut(s)	941
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	6 cut(s)	12, 395, 530, 620, 644, 959
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	7 cut(s)	248, 298, 386, 469, 608, 709, 955
AluI	AGCT	7 cut(s)	248, 298, 386, 469, 608, 709, 955
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	3 cut(s)	245, 298, 411
ApoI	RAATTY	1 cut(s)	203
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	253, 503
AvaII	GGWCC	1 cut(s)	185
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	257, 285, 423
BccI	CCATC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	343
BciVI	GTATCC	1 cut(s)	241
BclI	TGATCA	1 cut(s)	769
BfmI	CTRYAG	2 cut(s)	243, 333
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	3 cut(s)	246, 299, 412
BlsI	GCNGC	3 cut(s)	247, 300, 413
Bme1390I	CCNGG	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	211, 358
BmrFI	CCNGG	1 cut(s)	343
BmrI	ACTGGG	1 cut(s)	660
BmsI	GCATC	1 cut(s)	885
BmuI	ACTGGG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	2 cut(s)	38, 731
BsaAI	YACGTR	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	4 cut(s)	316, 342, 822, 930
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	3 cut(s)	368, 655, 680
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	4 cut(s)	316, 342, 822, 930
BseGI	GGATG	2 cut(s)	404, 835
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	3 cut(s)	368, 655, 680
BseXI	GCAGC	3 cut(s)	257, 285, 423
BseYI	CCCAGC	1 cut(s)	563
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	769
Bsp19I	CCATGG	1 cut(s)	822
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	211, 358
BspMAI	CTGCAG	1 cut(s)	247
BspQI	GCTCTTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	368, 655, 680
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	4 cut(s)	316, 342, 822, 930
BssMI	GATC	1 cut(s)	769
BssNAI	GTATAC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	3 cut(s)	316, 822, 930
Bst1107I	GTATAC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	290, 337
Bst6I	CTCTTC	3 cut(s)	38, 74, 734
BstACI	GRCGYC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	3 cut(s)	303, 307, 467
BstDEI	CTNAG	2 cut(s)	249, 911
BstDSI	CCRYGG	1 cut(s)	822
BstF5I	GGATG	2 cut(s)	404, 835
BstKTI	GATC	1 cut(s)	772
BstMBI	GATC	1 cut(s)	769
BstNI	CCWGG	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	902
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	2 cut(s)	243, 333
BstV1I	GCAGC	3 cut(s)	257, 285, 423
BstZ17I	GTATAC	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	822
BtsCI	GGATG	2 cut(s)	404, 835
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	2 cut(s)	361, 842
Cac8I	GCNNGC	3 cut(s)	303, 307, 467
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	940
CviAII	CATG	5 cut(s)	428, 823, 835, 892, 899
CviQI	GTAC	1 cut(s)	940
DdeI	CTNAG	2 cut(s)	249, 911
DpnI	GATC	1 cut(s)	771
DpnII	GATC	1 cut(s)	769
DraI	TTTAAA	1 cut(s)	687
Eam1104I	CTCTTC	3 cut(s)	38, 74, 734
EarI	CTCTTC	3 cut(s)	38, 74, 734
Eco130I	CCWWGG	3 cut(s)	316, 822, 930
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	2 cut(s)	401, 876
EcoRII	CCWGG	1 cut(s)	341
EcoT14I	CCWWGG	3 cut(s)	316, 822, 930
EcoT22I	ATGCAT	1 cut(s)	900
ErhI	CCWWGG	3 cut(s)	316, 822, 930
FaeI	CATG	5 cut(s)	431, 826, 838, 895, 902
FatI	CATG	5 cut(s)	427, 822, 834, 891, 898
FauI	CCCGC	1 cut(s)	221
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	246, 299, 412
FokI	GGATG	2 cut(s)	391, 842
Fsp4HI	GCNGC	3 cut(s)	246, 299, 412
GluI	GCNGC	3 cut(s)	246, 299, 412
GsaI	CCCAGC	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	387
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	5 cut(s)	431, 826, 838, 895, 902
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	1 cut(s)	794
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	2 cut(s)	253, 503
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	175, 420
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	275, 278
HpyAV	CCTTC	2 cut(s)	249, 425
HpyCH4III	ACNGT	2 cut(s)	290, 337
HpyCH4IV	ACGT	4 cut(s)	273, 436, 663, 693
HpyF3I	CTNAG	2 cut(s)	249, 911
HpySE526I	ACGT	4 cut(s)	273, 436, 663, 693
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	5 cut(s)	431, 826, 838, 895, 902
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	1 cut(s)	769
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	215, 362
Lsp1109I	GCAGC	3 cut(s)	257, 285, 423
LweI	GCATC	1 cut(s)	885
MaeII	ACGT	4 cut(s)	273, 436, 663, 693
MaeIII	GTNAC	5 cut(s)	337, 453, 628, 655, 840
MalI	GATC	1 cut(s)	771
MboI	GATC	1 cut(s)	769
MboII	GAAGA	5 cut(s)	25, 91, 596, 727, 751
MfeI	CAATTG	2 cut(s)	189, 644
MluCI	AATT	5 cut(s)	189, 203, 371, 624, 644
MlyI	GAGTC	1 cut(s)	788
MmeI	TCCRAC	3 cut(s)	198, 646, 676
MnlI	CCTC	8 cut(s)	62, 158, 244, 244, 470, 595, 628, 735
Mph1103I	ATGCAT	1 cut(s)	900
MroNI	GCCGGC	1 cut(s)	305
MseI	TTAA	4 cut(s)	138, 374, 540, 686
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	343
MunI	CAATTG	2 cut(s)	189, 644
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	343
NaeI	GCCGGC	1 cut(s)	307
NcoI	CCATGG	1 cut(s)	822
NdeII	GATC	1 cut(s)	769
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	5 cut(s)	431, 826, 838, 895, 902
NlaIV	GGNNCC	2 cut(s)	211, 358
NmuCI	GTSAC	2 cut(s)	453, 840
NsiI	ATGCAT	1 cut(s)	900
NspI	RCATGY	1 cut(s)	902
PciSI	GCTCTTC	1 cut(s)	38
PctI	GAATGC	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	247, 300, 413
PleI	GAGTC	1 cut(s)	788
PpsI	GAGTC	1 cut(s)	788
Ppu21I	YACGTR	1 cut(s)	437
PsiI	TTATAA	1 cut(s)	548
Psp1406I	AACGTT	1 cut(s)	663
Psp6I	CCWGG	1 cut(s)	341
PspFI	CCCAGC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	211, 358
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	941
RsaNI	GTAC	1 cut(s)	940
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	4 cut(s)	138, 374, 540, 686
SatI	GCNGC	3 cut(s)	246, 299, 412
Sau3AI	GATC	1 cut(s)	769
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	1 cut(s)	343
SfaNI	GCATC	1 cut(s)	885
SfcI	CTRYAG	2 cut(s)	243, 333
SinI	GGWCC	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	53, 710
SmoI	CTYRAG	2 cut(s)	53, 710
Sse9I	AATT	5 cut(s)	189, 203, 371, 624, 644
SsiI	CCGC	1 cut(s)	214
SspI	AATATT	1 cut(s)	729
StyD4I	CCNGG	1 cut(s)	341
StyI	CCWWGG	3 cut(s)	316, 822, 930
TaaI	ACNGT	2 cut(s)	290, 337
TaiI	ACGT	4 cut(s)	276, 439, 666, 696
TaqI	TCGA	1 cut(s)	475
TasI	AATT	5 cut(s)	189, 203, 371, 624, 644
TatI	WGTACW	1 cut(s)	939
Tru1I	TTAA	4 cut(s)	138, 374, 540, 686
Tru9I	TTAA	4 cut(s)	138, 374, 540, 686
TscAI	CASTG	2 cut(s)	368, 849
TseFI	GTSAC	2 cut(s)	453, 840
TseI	GCWGC	3 cut(s)	245, 298, 411
Tsp45I	GTSAC	2 cut(s)	453, 840
TspDTI	ATGAA	6 cut(s)	25, 416, 459, 527, 664, 891
TspGWI	ACGGA	1 cut(s)	647
TspRI	CASTG	2 cut(s)	368, 849
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	195
ZraI	GACGTC	1 cut(s)	274
Zsp2I	ATGCAT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.