Rh6DG482500

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002267
Physical Location & Seq
Reverse (-)
64604762 .. 64605610
849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG482500.1

Sequence Viewer

Length: 849 bp
ATGGAAACTTCAACCTACTCCTACATCTTGCTCTTCATCATCTTTCTTTTCCTCAAGAGTTATTTCCAGAAAATTAAGAAAAGACTCCCACCAAGCCCTTCTCCTTCCCTTCCCATCATAGGTCATCTCTACCTCTTTAAGAAACCTCTCCACAGAACACTCGCAAAACTAACCGACAAATATGGTCCAATTTTATACCTTCAATTTGGATCCCGCCCGGTTGTTGTTGTATCCTCTCCTTCTGCAGTTGAGGAATGTTTCACCAAAAACGATGTCACTTTCGCAAACCGTCCAAAGCTGCTTGCCGGCAAGCACTTTGGATGTAACTATACTACGATTGTCTGGGCTCCCTATGGCTCTCACTGGCGCAACTTGAGACGCATAGCTTCCCTTGAGCTATTGTCATCCAGCCGCCTTCAGATGTTTCATGGCATACGTGCAGATGAAGTTAGGTCACTAATTTGCAAGCTTTTTCGAGGGTATAATGGTGGTGAACTGCGGAGTTTAGATATGAAGTCAACGTTTTTCGAGCCTACTCTTAATGTTTTGATGAGGGTGATTGCTGGGAAGAGATACTATGGTGAAGACATCGCAGGGTCCAGCGAAGCTAAGAGTTTTGAACAAATTGTGAAAGAGACTTTTCAATTGAGTGGGGCTAACAATATTGGAGATTTCTTGCCAGTTTTAAAGTACCTTGGATCAGGTGGCCTTGAAAAAAAGATGTTGAAATTACAGGAGAAGAGGGATAAGTTCATGCAATATTTGATTGAAGAACACAGAAAAGTGCAGAGTGGCTCTGTTTCTGAACAGAAGAGCAAGACCATGGTGGATGTCTTGTTGTCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

282

Amino Acids

32.18

Weight (kDa)

9.74

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 31 - 280 2.6e-28 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 214, 412, 499
AclI AACGTT 1 cut(s) 521
AclWI GGATC 3 cut(s) 204, 217, 706
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 1 cut(s) 692
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 7 cut(s) 12, 203, 620, 644, 713, 727, 770
AluBI AGCT 5 cut(s) 298, 386, 397, 469, 608
AluI AGCT 5 cut(s) 298, 386, 397, 469, 608
Alw26I GTCTC 2 cut(s) 370, 629
AlwI GGATC 3 cut(s) 204, 217, 706
AoxI GGCC 1 cut(s) 706
ApeKI GCWGC 1 cut(s) 298
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 2 cut(s) 185, 597
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 4 cut(s) 253, 503, 568, 593
AvaII GGWCC 2 cut(s) 185, 597
BaeI ACNNNNGTAYC 2 cut(s) 565, 598
BamHI GGATCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 591
BbvI GCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 122
BciVI GTATCC 1 cut(s) 241
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 370, 629
BfmI CTRYAG 1 cut(s) 243
BfuI GTATCC 1 cut(s) 241
BisI GCNGC 2 cut(s) 299, 412
BlsI GCNGC 2 cut(s) 300, 413
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 2 cut(s) 185, 597
BmgT120I GGNCC 2 cut(s) 185, 597
BmiI GGNNCC 3 cut(s) 211, 348, 598
BmrFI CCNGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 591
BpuEI CTTGAG 3 cut(s) 38, 394, 413
BpuMI CCSGG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 694, 822
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 2 cut(s) 368, 680
BseDI CCNNGG 2 cut(s) 694, 822
BseGI GGATG 3 cut(s) 326, 404, 835
BseLI CCNNNNNNNGG 1 cut(s) 119
BseNI ACTGG 2 cut(s) 368, 680
BseXI GCAGC 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 563
BsgI GTGCAG 2 cut(s) 459, 806
BshFI GGCC 1 cut(s) 708
BsiSI CCGG 2 cut(s) 218, 306
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 370, 629
BsmBI CGTCTC 1 cut(s) 370
BsnI GGCC 1 cut(s) 708
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 2 cut(s) 209, 698
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 3 cut(s) 214, 412, 499
BspANI GGCC 1 cut(s) 708
BspLI GGNNCC 3 cut(s) 211, 348, 598
BspMAI CTGCAG 1 cut(s) 247
BspPI GGATC 3 cut(s) 204, 217, 706
BspQI GCTCTTC 2 cut(s) 38, 806
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 2 cut(s) 368, 680
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 694, 822
BssMI GATC 2 cut(s) 209, 698
BssT1I CCWWGG 2 cut(s) 694, 822
Bst4CI ACNGT 2 cut(s) 290, 846
Bst6I CTCTTC 4 cut(s) 38, 563, 734, 806
BstBAI YACGTR 1 cut(s) 437
BstC8I GCNNGC 4 cut(s) 303, 307, 311, 467
BstDEI CTNAG 1 cut(s) 609
BstDSI CCRYGG 1 cut(s) 822
BstF5I GGATG 3 cut(s) 326, 404, 835
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 2 cut(s) 212, 701
BstMAI GTCTC 2 cut(s) 370, 629
BstMBI GATC 2 cut(s) 209, 698
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 708
BtgI CCRYGG 1 cut(s) 822
BtgZI GCGATG 1 cut(s) 574
BtsCI GGATG 3 cut(s) 326, 404, 835
BtsIMutI CAGTG 2 cut(s) 361, 842
Cac8I GCNNGC 4 cut(s) 303, 307, 311, 467
CfoI GCGC 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 2 cut(s) 185, 597
CseI GACGC 1 cut(s) 387
Csp6I GTAC 1 cut(s) 691
CviAII CATG 3 cut(s) 428, 754, 823
CviQI GTAC 1 cut(s) 691
DdeI CTNAG 1 cut(s) 609
DpnI GATC 2 cut(s) 211, 700
DpnII GATC 2 cut(s) 209, 698
DraI TTTAAA 1 cut(s) 687
Eam1104I CTCTTC 4 cut(s) 38, 563, 734, 806
EarI CTCTTC 4 cut(s) 38, 563, 734, 806
Eco130I CCWWGG 2 cut(s) 694, 822
Eco24I GRGCYC 1 cut(s) 349
Eco47I GGWCC 2 cut(s) 185, 597
Eco57I CTGAAG 1 cut(s) 401
EcoT14I CCWWGG 2 cut(s) 694, 822
EcoT38I GRGCYC 1 cut(s) 349
ErhI CCWWGG 2 cut(s) 694, 822
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 3 cut(s) 431, 757, 826
FatI CATG 3 cut(s) 427, 753, 822
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 2 cut(s) 299, 412
FokI GGATG 3 cut(s) 333, 391, 842
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 2 cut(s) 299, 412
GlaI GCGC 1 cut(s) 368
GluI GCNGC 2 cut(s) 299, 412
GsaI CCCAGC 1 cut(s) 567
HaeIII GGCC 1 cut(s) 708
HapII CCGG 2 cut(s) 218, 306
HgaI GACGC 1 cut(s) 387
HhaI GCGC 1 cut(s) 369
Hin1II CATG 3 cut(s) 431, 757, 826
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 1 cut(s) 84
HpaII CCGG 2 cut(s) 218, 306
HphI GGTGA 4 cut(s) 253, 503, 568, 593
Hpy166II GTNNAC 2 cut(s) 494, 519
Hpy188I TCNGA 2 cut(s) 420, 805
Hpy188III TCNNGA 2 cut(s) 55, 67
Hpy8I GTNNAC 2 cut(s) 494, 519
HpyAV CCTTC 6 cut(s) 108, 114, 119, 209, 249, 425
HpyCH4III ACNGT 2 cut(s) 290, 846
HpyCH4IV ACGT 2 cut(s) 436, 521
HpyCH4V TGCA 5 cut(s) 245, 440, 465, 757, 787
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 2 cut(s) 436, 521
Hsp92II CATG 3 cut(s) 431, 757, 826
HspAI GCGC 1 cut(s) 367
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 209, 698
LguI GCTCTTC 2 cut(s) 38, 806
LmnI GCTCC 1 cut(s) 352
Lsp1109I GCAGC 1 cut(s) 285
MaeII ACGT 2 cut(s) 436, 521
MaeIII GTNAC 4 cut(s) 274, 323, 453, 840
MalI GATC 2 cut(s) 211, 700
MboI GATC 2 cut(s) 209, 698
MboII GAAGA 6 cut(s) 25, 580, 596, 751, 782, 823
MfeI CAATTG 1 cut(s) 644
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 7 cut(s) 72, 189, 203, 459, 624, 644, 728
MlyI GAGTC 1 cut(s) 78
MnlI CCTC 8 cut(s) 62, 143, 156, 244, 244, 470, 546, 735
MroNI GCCGGC 1 cut(s) 305
MseI TTAA 4 cut(s) 75, 138, 540, 686
MspI CCGG 2 cut(s) 218, 306
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 644
NaeI GCCGGC 1 cut(s) 307
NciI CCSGG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 822
NdeII GATC 2 cut(s) 209, 698
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 3 cut(s) 431, 757, 826
NlaIV GGNNCC 3 cut(s) 211, 348, 598
NmuCI GTSAC 3 cut(s) 274, 453, 840
PciSI GCTCTTC 2 cut(s) 38, 806
PdiI GCCGGC 1 cut(s) 307
PkrI GCNGC 2 cut(s) 300, 413
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
Ppu21I YACGTR 1 cut(s) 437
Psp1406I AACGTT 1 cut(s) 521
PspFI CCCAGC 1 cut(s) 563
PspN4I GGNNCC 3 cut(s) 211, 348, 598
PspPI GGNCC 2 cut(s) 185, 597
PstI CTGCAG 1 cut(s) 247
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
SapI GCTCTTC 2 cut(s) 38, 806
SaqAI TTAA 4 cut(s) 75, 138, 540, 686
SatI GCNGC 2 cut(s) 299, 412
Sau3AI GATC 2 cut(s) 209, 698
Sau96I GGNCC 2 cut(s) 185, 597
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 2 cut(s) 185, 597
SmlI CTYRAG 3 cut(s) 53, 373, 392
SmoI CTYRAG 3 cut(s) 53, 373, 392
Sse9I AATT 7 cut(s) 72, 189, 203, 459, 624, 644, 728
SsiI CCGC 3 cut(s) 214, 412, 499
SspI AATATT 2 cut(s) 664, 761
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 2 cut(s) 694, 822
TaaI ACNGT 2 cut(s) 290, 846
TaiI ACGT 2 cut(s) 439, 524
TaqI TCGA 2 cut(s) 475, 528
TasI AATT 7 cut(s) 72, 189, 203, 459, 624, 644, 728
TauI GCSGC 1 cut(s) 414
Tru1I TTAA 4 cut(s) 75, 138, 540, 686
Tru9I TTAA 4 cut(s) 75, 138, 540, 686
TscAI CASTG 2 cut(s) 368, 849
TseFI GTSAC 3 cut(s) 274, 453, 840
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 3 cut(s) 274, 453, 840
TspDTI ATGAA 5 cut(s) 25, 416, 459, 527, 742
TspRI CASTG 2 cut(s) 368, 849
VpaK11BI GGWCC 2 cut(s) 185, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.