RLG00000010596

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002267
Physical Location & Seq
Forward (+)
2848693 .. 2850404
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010596

Sequence Viewer

Length: 1524 bp
ATGGAAACTTCAATCTCCTACTACCTATGGCTCTCCATTATCTTTCTTTTTCTCGTTAAGAACTATTTGCAGAAAATTAAGAAAAGACTCCCACCAAGCCCTTCTCTTTGCTTTCCCATAATAGGTCATCTCCACCTTTTTAAGAAACCTCTCCACCGAACACTTGCAAAACTAACTGACAAATATGGTCCAATCTTATACCTTCAATTTGGATCCCGCCCGGTTGTTGTTGTATCCTCTCCTTCGGCGATTGAGGAATGCTTCACCAAAAACGATGTCACCTTCGCAAACCGTCCAAAGCTGCTTGCCGGCAAGCACCTTGGATATAACTATACTACGATTACCTGGGCTCCCCATGGCTCTCACTGGCGCAACTTGAGACGCATAGCTTCCCTTGAGCTATTGTCATCCAGCCGCCTTCAGATGTTTCATGGCATACGTGCAGATGAAGTTAGGTCACTAATTTGCAAGCTTTTTCGAGGATCTAATGGTGGTGAACTGCTGAGTTTAGATATGAAGTCAACGTTTTTCGAGCTTACTCTTAATGTTTTGATGAGGGTGATTGCTGGGAAGAGATACTATGGGGAAGACATCGCAGACTCCAGCGAAGCTAAGAGTTTTGAACAAATTGTGAAAGAGACTTTTCAATTGAGTGGGGCTAACAATATTGGAGATTTCTTGCCAGTTTTTGAGTACTTTGGATCAGGTGGTCTAGAAAAAAAGTTGGTGAAATTGCAAAAGAAGAGAGATAAGTTCATGCAAGATTTGATTGAACAACACAGAAAAGCGCAGAGTGGCTCTGTTTCTGAACAGAAAAGCAAGACGCTGGTGGATGTCTTGTTGTCACTGCAAGCAACTGAACCTGAATATTATACTGATGAAATCATAAGAGGCATAATGCAAAACATGTTAGCAGCAGGAACAGACACCTCGGCTGGAACCATGGAATGGGCTCTATCACTATTGCTCAACAACCCAGAAGCCCTTGCAGAGGCAGAGACAGAAATTGATAACAAAATTGGGCAAAGCAGGCTAATTGAGGAATCAGACCTTGCTAATCTCCCCTATCTCCACTGCATCATAAAGGAGACCCTCAGAATGTACCCAGCAGCCGCACTTCTGCCCCCACATGAGTCATCAGAGGACTGCACAGTGGGAGGCTTCAACGTTCCTCGTGGAACAATGCTGTTGGTGAACGCATGGGCCATACATCATGATCCTGAGTTGTGGGAAGAGCCTGAACTATTTAAGCCAGAGAGGTTCCAAAATGCACAAGAAGAAAGAGATGCTTTCGTGTACTTGCCATTTGGGACAGGAAGGAGAGGCTGTCCTGGGGAAGGGTTAGCAAACCGGATCGTAGGGCTGGCCATAGGGTCAGTCATTCAGTGTTTTGAATGGGAGAGAAGTGGTGAGGAGATGGTGGACATGACTGAAGGGGCTGGCCTCACAATGCCGAAAGCTCACCCTTTGCTAGCAAAATGCAGGCCACGCCCAACGATGCTGGCCTTACTTTCTCAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

508

Amino Acids

57.09

Weight (kDa)

6.69

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 486 2.9e-100 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 948
AciI CCGC 3 cut(s) 217, 415, 1113
AclI AACGTT 2 cut(s) 524, 1167
AclWI GGATC 6 cut(s) 207, 220, 490, 709, 1211, 1361
AcoI YGGCCR 1 cut(s) 1365
AcuI CTGAAG 2 cut(s) 404, 1452
AfaI GTAC 3 cut(s) 695, 1103, 1298
AfiI CCNNNNNNNGG 4 cut(s) 122, 948, 991, 1337
AflIII ACRYGT 1 cut(s) 906
AgsI TTSAA 7 cut(s) 12, 206, 623, 647, 773, 1165, 1394
AjnI CCWGG 2 cut(s) 344, 1330
AluBI AGCT 7 cut(s) 301, 389, 400, 472, 535, 611, 1460
AluI AGCT 7 cut(s) 301, 389, 400, 472, 535, 611, 1460
Alw26I GTCTC 4 cut(s) 373, 632, 992, 1082
AlwI GGATC 6 cut(s) 207, 220, 490, 709, 1211, 1361
AoxI GGCC 5 cut(s) 1203, 1365, 1441, 1484, 1503
ApeKI GCWGC 3 cut(s) 301, 914, 1109
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AspLEI GCGC 2 cut(s) 372, 790
AspS9I GGNCC 2 cut(s) 188, 1203
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 8 cut(s) 256, 271, 506, 571, 739, 1204, 1421, 1454
AsuNHI GCTAGC 1 cut(s) 1471
AvaII GGWCC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 1367
BamHI GGATCC 1 cut(s) 212
BanII GRGCYC 2 cut(s) 352, 955
BauI CACGAG 1 cut(s) 1173
BbsI GAAGAC 1 cut(s) 594
BbvI GCAGC 3 cut(s) 288, 926, 1121
BccI CCATC 1 cut(s) 1411
BciT130I CCWGG 2 cut(s) 346, 1332
BciVI GTATCC 1 cut(s) 244
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 4 cut(s) 373, 632, 992, 1082
BfaI CTAG 2 cut(s) 713, 1472
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 5 cut(s) 302, 415, 915, 1110, 1113
BlsI GCNGC 5 cut(s) 303, 416, 916, 1111, 1114
BmcAI AGTACT 1 cut(s) 695
Bme1390I CCNGG 3 cut(s) 221, 346, 1332
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 188, 1203
BmiI GGNNCC 4 cut(s) 214, 351, 940, 1262
BmrFI CCNGG 3 cut(s) 221, 346, 1332
BmsI GCATC 3 cut(s) 1086, 1276, 1488
BmtI GCTAGC 1 cut(s) 1475
BpiI GAAGAC 1 cut(s) 594
BpmI CTGGAG 1 cut(s) 586
BpuEI CTTGAG 2 cut(s) 397, 416
BpuMI CCSGG 1 cut(s) 221
BsaAI YACGTR 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 1082
BsaJI CCNNGG 6 cut(s) 319, 345, 355, 930, 942, 1331
BsaWI WCCGGW 1 cut(s) 1350
BsaXI ACNNNNNCTCC 4 cut(s) 334, 364, 1312, 1342
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 948, 991, 1337
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 2 cut(s) 371, 683
BseBI CCWGG 2 cut(s) 346, 1332
BseDI CCNNGG 6 cut(s) 319, 345, 355, 930, 942, 1331
BseGI GGATG 2 cut(s) 407, 838
BseLI CCNNNNNNNGG 4 cut(s) 122, 948, 991, 1337
BseMII CTCAG 3 cut(s) 494, 1108, 1212
BseNI ACTGG 2 cut(s) 371, 683
BseRI GAGGAG 1 cut(s) 1427
BseXI GCAGC 3 cut(s) 288, 926, 1121
BseYI CCCAGC 2 cut(s) 566, 1105
BsgI GTGCAG 2 cut(s) 462, 1132
BshFI GGCC 5 cut(s) 1205, 1367, 1443, 1486, 1505
BsiSI CCGG 3 cut(s) 221, 309, 1351
BslFI GGGAC 1 cut(s) 1324
BslI CCNNNNNNNGG 4 cut(s) 122, 948, 991, 1337
BsmAI GTCTC 4 cut(s) 373, 632, 992, 1082
BsmBI CGTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 1324
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 5 cut(s) 1205, 1367, 1443, 1486, 1505
Bso31I GGTCTC 1 cut(s) 1082
Bsp1286I GDGCHC 2 cut(s) 352, 955
Bsp143I GATC 5 cut(s) 212, 482, 701, 1216, 1353
Bsp19I CCATGG 2 cut(s) 355, 942
BspACI CCGC 3 cut(s) 217, 415, 1113
BspANI GGCC 5 cut(s) 1205, 1367, 1443, 1486, 1505
BspCNI CTCAG 3 cut(s) 495, 1107, 1213
BspHI TCATGA 1 cut(s) 1213
BspLI GGNNCC 4 cut(s) 214, 351, 940, 1262
BspOI GCTAGC 1 cut(s) 1475
BspPI GGATC 6 cut(s) 207, 220, 490, 709, 1211, 1361
BspQI GCTCTTC 1 cut(s) 1227
BspTNI GGTCTC 1 cut(s) 1082
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 2 cut(s) 371, 683
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 6 cut(s) 319, 345, 355, 930, 942, 1331
BssMI GATC 5 cut(s) 212, 482, 701, 1216, 1353
BssSI CACGAG 1 cut(s) 1173
BssT1I CCWWGG 3 cut(s) 319, 355, 942
Bst2BI CACGAG 1 cut(s) 1173
Bst2UI CCWGG 2 cut(s) 346, 1332
Bst4CI ACNGT 2 cut(s) 293, 1153
Bst6I CTCTTC 3 cut(s) 566, 737, 1227
BstBAI YACGTR 1 cut(s) 440
BstDEI CTNAG 4 cut(s) 503, 612, 1094, 1221
BstDSI CCRYGG 2 cut(s) 355, 942
BstENI CCTNNNNNAGG 2 cut(s) 989, 1335
BstF5I GGATG 2 cut(s) 407, 838
BstHHI GCGC 2 cut(s) 372, 790
BstKTI GATC 5 cut(s) 215, 485, 704, 1219, 1356
BstMAI GTCTC 4 cut(s) 373, 632, 992, 1082
BstMBI GATC 5 cut(s) 212, 482, 701, 1216, 1353
BstMWI GCNNNNNNNGC 2 cut(s) 1030, 1488
BstNI CCWGG 2 cut(s) 346, 1332
BstNSI RCATGY 1 cut(s) 910
BstSCI CCNGG 3 cut(s) 219, 344, 1330
BstV1I GCAGC 3 cut(s) 288, 926, 1121
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 2 cut(s) 212, 482
BstYI RGATCY 2 cut(s) 212, 482
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 5 cut(s) 1205, 1367, 1443, 1486, 1505
BtgI CCRYGG 2 cut(s) 355, 942
BtgZI GCGATG 1 cut(s) 577
BtsCI GGATG 2 cut(s) 407, 838
BtsI GCAGTG 2 cut(s) 845, 1072
BtsIMutI CAGTG 5 cut(s) 364, 845, 1072, 1158, 1391
CciI TCATGA 1 cut(s) 1213
CfoI GCGC 2 cut(s) 372, 790
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 188, 1203
CseI GACGC 2 cut(s) 390, 832
Csp6I GTAC 3 cut(s) 694, 1102, 1297
CviAII CATG 9 cut(s) 356, 431, 757, 907, 943, 1130, 1200, 1214, 1426
CviQI GTAC 3 cut(s) 694, 1102, 1297
DdeI CTNAG 4 cut(s) 503, 612, 1094, 1221
DpnI GATC 5 cut(s) 214, 484, 703, 1218, 1355
DpnII GATC 5 cut(s) 212, 482, 701, 1216, 1353
EaeI YGGCCR 1 cut(s) 1365
Eam1104I CTCTTC 3 cut(s) 566, 737, 1227
EarI CTCTTC 3 cut(s) 566, 737, 1227
Eco130I CCWWGG 3 cut(s) 319, 355, 942
Eco24I GRGCYC 2 cut(s) 352, 955
Eco31I GGTCTC 1 cut(s) 1082
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 2 cut(s) 404, 1452
EcoNI CCTNNNNNAGG 2 cut(s) 989, 1335
EcoRII CCWGG 2 cut(s) 344, 1330
EcoT14I CCWWGG 3 cut(s) 319, 355, 942
EcoT38I GRGCYC 2 cut(s) 352, 955
ErhI CCWWGG 3 cut(s) 319, 355, 942
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 9 cut(s) 359, 434, 760, 910, 946, 1133, 1203, 1217, 1429
FalI AAGNNNNNCTT 2 cut(s) 1273, 1305
FaqI GGGAC 1 cut(s) 1324
FatI CATG 9 cut(s) 355, 430, 756, 906, 942, 1129, 1199, 1213, 1425
FauI CCCGC 1 cut(s) 224
Fnu4HI GCNGC 5 cut(s) 302, 415, 915, 1110, 1113
FokI GGATG 2 cut(s) 394, 845
FriOI GRGCYC 2 cut(s) 352, 955
Fsp4HI GCNGC 5 cut(s) 302, 415, 915, 1110, 1113
FspBI CTAG 2 cut(s) 713, 1472
GlaI GCGC 2 cut(s) 371, 789
GluI GCNGC 5 cut(s) 302, 415, 915, 1110, 1113
GsaI CCCAGC 2 cut(s) 570, 1109
GsuI CTGGAG 1 cut(s) 586
HaeIII GGCC 5 cut(s) 1205, 1367, 1443, 1486, 1505
HapII CCGG 3 cut(s) 221, 309, 1351
HgaI GACGC 2 cut(s) 390, 832
HhaI GCGC 2 cut(s) 372, 790
Hin1II CATG 9 cut(s) 359, 434, 760, 910, 946, 1133, 1203, 1217, 1429
Hin6I GCGC 2 cut(s) 370, 788
HinP1I GCGC 2 cut(s) 370, 788
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 4 cut(s) 87, 599, 1043, 1133
HpaII CCGG 3 cut(s) 221, 309, 1351
HphI GGTGA 8 cut(s) 256, 271, 506, 571, 739, 1204, 1421, 1454
Hpy166II GTNNAC 5 cut(s) 497, 522, 1195, 1297, 1423
Hpy188I TCNGA 5 cut(s) 423, 808, 1048, 1097, 1141
Hpy188III TCNNGA 3 cut(s) 713, 1214, 1220
Hpy8I GTNNAC 5 cut(s) 497, 522, 1195, 1297, 1423
HpyAV CCTTC 8 cut(s) 111, 212, 252, 292, 428, 1311, 1331, 1427
HpyCH4III ACNGT 2 cut(s) 293, 1153
HpyCH4IV ACGT 3 cut(s) 439, 524, 1167
HpyF10VI GCNNNNNNNGC 2 cut(s) 1030, 1488
HpyF3I CTNAG 4 cut(s) 503, 612, 1094, 1221
HpySE526I ACGT 3 cut(s) 439, 524, 1167
Hsp92II CATG 9 cut(s) 359, 434, 760, 910, 946, 1133, 1203, 1217, 1429
HspAI GCGC 2 cut(s) 370, 788
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
Kzo9I GATC 5 cut(s) 212, 482, 701, 1216, 1353
LguI GCTCTTC 1 cut(s) 1227
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 3 cut(s) 288, 926, 1121
LweI GCATC 3 cut(s) 1086, 1276, 1488
MaeI CTAG 2 cut(s) 713, 1472
MaeII ACGT 3 cut(s) 439, 524, 1167
MaeIII GTNAC 3 cut(s) 277, 456, 843
MalI GATC 5 cut(s) 214, 484, 703, 1218, 1355
MboI GATC 5 cut(s) 212, 482, 701, 1216, 1353
MboII GAAGA 5 cut(s) 583, 599, 754, 1244, 1289
MfeI CAATTG 1 cut(s) 647
MflI RGATCY 2 cut(s) 212, 482
MhlI GDGCHC 2 cut(s) 352, 955
MlsI TGGCCA 1 cut(s) 1367
MluCI AATT 9 cut(s) 75, 206, 462, 627, 647, 731, 1005, 1017, 1035
MluNI TGGCCA 1 cut(s) 1367
MlyI GAGTC 3 cut(s) 81, 593, 1142
Mox20I TGGCCA 1 cut(s) 1367
MroNI GCCGGC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 1367
MseI TTAA 5 cut(s) 57, 78, 141, 543, 1248
Msp20I TGGCCA 1 cut(s) 1367
MspI CCGG 3 cut(s) 221, 309, 1351
MspR9I CCNGG 3 cut(s) 221, 346, 1332
MunI CAATTG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 2 cut(s) 346, 1332
MwoI GCNNNNNNNGC 2 cut(s) 1030, 1488
NaeI GCCGGC 1 cut(s) 310
NciI CCSGG 1 cut(s) 221
NcoI CCATGG 2 cut(s) 355, 942
NdeII GATC 5 cut(s) 212, 482, 701, 1216, 1353
NgoMIV GCCGGC 1 cut(s) 308
NheI GCTAGC 1 cut(s) 1471
NlaIII CATG 9 cut(s) 359, 434, 760, 910, 946, 1133, 1203, 1217, 1429
NlaIV GGNNCC 4 cut(s) 214, 351, 940, 1262
NmeAIII GCCGAG 1 cut(s) 911
NmuCI GTSAC 3 cut(s) 277, 456, 843
NspI RCATGY 1 cut(s) 910
PagI TCATGA 1 cut(s) 1213
PciI ACATGT 1 cut(s) 906
PciSI GCTCTTC 1 cut(s) 1227
PctI GAATGC 1 cut(s) 263
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 1 cut(s) 1043
PflMI CCANNNNNTGG 1 cut(s) 948
PkrI GCNGC 5 cut(s) 303, 416, 916, 1111, 1114
PleI GAGTC 3 cut(s) 81, 593, 1141
PpsI GAGTC 3 cut(s) 81, 593, 1141
Ppu21I YACGTR 1 cut(s) 440
PscI ACATGT 1 cut(s) 906
Psp1406I AACGTT 2 cut(s) 524, 1167
Psp6I CCWGG 2 cut(s) 344, 1330
PspFI CCCAGC 2 cut(s) 566, 1105
PspGI CCWGG 2 cut(s) 344, 1330
PspN4I GGNNCC 4 cut(s) 214, 351, 940, 1262
PspPI GGNCC 2 cut(s) 188, 1203
PsuI RGATCY 2 cut(s) 212, 482
RsaI GTAC 3 cut(s) 695, 1103, 1298
RsaNI GTAC 3 cut(s) 694, 1102, 1297
SapI GCTCTTC 1 cut(s) 1227
SaqAI TTAA 5 cut(s) 57, 78, 141, 543, 1248
SatI GCNGC 5 cut(s) 302, 415, 915, 1110, 1113
Sau3AI GATC 5 cut(s) 212, 482, 701, 1216, 1353
Sau96I GGNCC 2 cut(s) 188, 1203
ScaI AGTACT 1 cut(s) 695
SchI GAGTC 3 cut(s) 81, 593, 1142
ScrFI CCNGG 3 cut(s) 221, 346, 1332
SduI GDGCHC 2 cut(s) 352, 955
SfaNI GCATC 3 cut(s) 1086, 1276, 1488
SinI GGWCC 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 376, 395
SmoI CTYRAG 2 cut(s) 376, 395
Sse9I AATT 9 cut(s) 75, 206, 462, 627, 647, 731, 1005, 1017, 1035
SsiI CCGC 3 cut(s) 217, 415, 1113
SspI AATATT 2 cut(s) 667, 869
SspMI CTAG 2 cut(s) 713, 1472
StyD4I CCNGG 3 cut(s) 219, 344, 1330
StyI CCWWGG 3 cut(s) 319, 355, 942
TaaI ACNGT 2 cut(s) 293, 1153
TaiI ACGT 3 cut(s) 442, 527, 1170
TaqI TCGA 2 cut(s) 478, 531
TasI AATT 9 cut(s) 75, 206, 462, 627, 647, 731, 1005, 1017, 1035
TatI WGTACW 2 cut(s) 693, 1296
TauI GCSGC 2 cut(s) 417, 1115
TfiI GAWTC 1 cut(s) 1043
Tru1I TTAA 5 cut(s) 57, 78, 141, 543, 1248
Tru9I TTAA 5 cut(s) 57, 78, 141, 543, 1248
TscAI CASTG 5 cut(s) 371, 852, 1079, 1158, 1391
TseFI GTSAC 3 cut(s) 277, 456, 843
TseI GCWGC 3 cut(s) 301, 914, 1109
Tsp45I GTSAC 3 cut(s) 277, 456, 843
TspDTI ATGAA 5 cut(s) 419, 462, 530, 745, 894
TspRI CASTG 5 cut(s) 371, 852, 1079, 1158, 1391
Van91I CCANNNNNTGG 1 cut(s) 948
VpaK11BI GGWCC 1 cut(s) 188
XagI CCTNNNNNAGG 2 cut(s) 989, 1335
XbaI TCTAGA 1 cut(s) 712
XceI RCATGY 1 cut(s) 910
XspI CTAG 2 cut(s) 713, 1472
ZrmI AGTACT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.