Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019440.1

Orthogroup ID

OG0002267

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1315

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019440.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1145 bp

atggaaacttcaacctactcctacatcttgctcttcatcatctttcttttcctcaagagttatttgcagaaaattaagaaaagactcccaccaagcccttctccttcccttcccatcataggtcatctctacctatttaagaaacctctccacagaacactcgcaaaactaactgacaaatatggtccaattttataccttcaatttggatcccgccctgttgttgttgtatcctctccttctgcagttgaggaatgtttcaccaaaaacgatgtcactttcgcaaaccgtccaaagctgcttgccggcaagcactttggatgcaactatactgcgattgtctgggcttcctatggctctcactggcgcaacttgagacgcatagcttcccttgagctattgtcatccagccgccttcagatgtttcatggcatacgtgcagatgaagttaggtcactaatttgcaagctttttcgagggtataatggtggtgaactgaggagtttagatatgaagtcaacgtttttcgagcttactcttaatgttttgatgagggtgattgctgggaagagatactatggtgaagacatcgcagggtccagcgaagctaagagttttgaacaaattgtgaaagagacttttcaattgagtggggctaacaatattggagatttcttgccagttttaaagtaccttggatcaggtggccttgaaaaaaagatgttgaaattacaggagaagagggataagttcatgcaatatttgattgaagaacgcagaaaagtgcagagtggctctgtttctgaacagaagagcaagaccatggtggatgtcttgttgtcactgcaagcaactgaacctgaatattatactgatgaaatcataagaggcatcatgcaaaacatgttaacagcaggaacagacacctcggctggaaccatggaatgggctctatcactattgctcaacaacccagaagcccttgcaaaggcacagacagaaattgatgacaaaattgggcaaagcaggctaattgaggaatcagaccttgctgatctcccctatctccattgcatcataaacgagaccctcagaatgtacccagcagccgcacttcttcccccacacgagtcatcagaggactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

381

Amino Acids

43.11

Weight (kDa)

8.78

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33451 FvH4_2g33470 FvH4_2g33471 FvH4_2g33490
malus_domestica	MD08G1090000.v1.1 MD15G1074600.v1.1 MD15G1074800.v1.1
prunus_persica	Prupe.1G427100_v2.0.a1 Prupe.1G427300_v2.0.a1
pyrus_communis	pycom15g06960 pycom15g06970
rosa_chinensis	RchiOBHm_Chr6g0309031 RchiOBHm_Chr6g0309071
rosa_laevigata	RLG00000010592 RLG00000010595 RLG00000010596
rosa_multiflora	Rmu_co8367281.1_g000001 Rmu_co8411305.1_g000001 Rmu_sc0012331.1_g000004 Rmu_sc0012331.1_g000005 Rmu_sc0012331.1_g000007 Rmu_sc0019440.1_g000001 Rmu_sc0034731.1_g000001 Rmu_sc0040393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159670 Rroxscaffold_7G00159710 Rroxscaffold_7G00159720 Rroxscaffold_7G00159730
rosa_rugosa	Rorug06G0369400 Rorug07G0309400.1
rosa_samantha	Rh6AG481800 Rh6AG481900 Rh6AG482200 Rh6BG490800 Rh6BG491100 Rh6DG482300 Rh6DG482400 Rh6DG482500 Rh7BG435000 Rh7BG435400
rosa_wichuraiana	Rw6G041950 Rw6G041960 Rw6G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	945
AciI	CCGC	3 cut(s)	214, 412, 1110
AclI	AACGTT	1 cut(s)	521
AclWI	GGATC	3 cut(s)	204, 217, 706
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	692, 1100
AfiI	CCNNNNNNNGG	3 cut(s)	119, 945, 988
AflIII	ACRYGT	1 cut(s)	903
AgsI	TTSAA	7 cut(s)	12, 203, 620, 644, 713, 727, 770
AluBI	AGCT	6 cut(s)	298, 386, 397, 469, 532, 608
AluI	AGCT	6 cut(s)	298, 386, 397, 469, 532, 608
Alw26I	GTCTC	3 cut(s)	370, 629, 1079
AlwI	GGATC	3 cut(s)	204, 217, 706
AoxI	GGCC	1 cut(s)	706
ApeKI	GCWGC	2 cut(s)	298, 1106
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	185, 597
AsuHPI	GGTGA	4 cut(s)	253, 503, 568, 593
AvaII	GGWCC	2 cut(s)	185, 597
BaeI	ACNNNNGTAYC	2 cut(s)	565, 598
BamHI	GGATCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	952
BauI	CACGAG	1 cut(s)	1127
BbsI	GAAGAC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	285, 1118
BccI	CCATC	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	241
BcoDI	GTCTC	3 cut(s)	370, 629, 1079
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	4 cut(s)	299, 412, 1107, 1110
BlsI	GCNGC	4 cut(s)	300, 413, 1108, 1111
Bme18I	GGWCC	2 cut(s)	185, 597
BmgT120I	GGNCC	2 cut(s)	185, 597
BmiI	GGNNCC	3 cut(s)	211, 598, 937
BmsI	GCATC	3 cut(s)	311, 900, 1083
BpiI	GAAGAC	1 cut(s)	591
BpuEI	CTTGAG	3 cut(s)	38, 394, 413
BsaAI	YACGTR	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	1079
BsaJI	CCNNGG	4 cut(s)	694, 822, 927, 939
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 945, 988
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	2 cut(s)	368, 680
Bse3DI	GCAATG	1 cut(s)	1069
BseDI	CCNNGG	4 cut(s)	694, 822, 927, 939
BseGI	GGATG	3 cut(s)	326, 404, 835
BseLI	CCNNNNNNNGG	3 cut(s)	119, 945, 988
BseMI	GCAATG	1 cut(s)	1069
BseMII	CTCAG	2 cut(s)	488, 1105
BseNI	ACTGG	2 cut(s)	368, 680
BseRI	GAGGAG	1 cut(s)	514
BseXI	GCAGC	2 cut(s)	285, 1118
BseYI	CCCAGC	2 cut(s)	563, 1102
BsgI	GTGCAG	2 cut(s)	459, 806
BshFI	GGCC	1 cut(s)	708
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	3 cut(s)	119, 945, 988
BsmAI	GTCTC	3 cut(s)	370, 629, 1079
BsmBI	CGTCTC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	708
Bso31I	GGTCTC	1 cut(s)	1079
Bsp1286I	GDGCHC	1 cut(s)	952
Bsp143I	GATC	3 cut(s)	209, 698, 1054
Bsp19I	CCATGG	2 cut(s)	822, 939
BspACI	CCGC	3 cut(s)	214, 412, 1110
BspANI	GGCC	1 cut(s)	708
BspCNI	CTCAG	2 cut(s)	489, 1104
BspLI	GGNNCC	3 cut(s)	211, 598, 937
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	3 cut(s)	204, 217, 706
BspQI	GCTCTTC	2 cut(s)	38, 806
BspTNI	GGTCTC	1 cut(s)	1079
BsrDI	GCAATG	1 cut(s)	1069
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	368, 680
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	4 cut(s)	694, 822, 927, 939
BssMI	GATC	3 cut(s)	209, 698, 1054
BssSI	CACGAG	1 cut(s)	1127
BssT1I	CCWWGG	3 cut(s)	694, 822, 939
Bst2BI	CACGAG	1 cut(s)	1127
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	4 cut(s)	38, 563, 734, 806
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	6 cut(s)	303, 307, 311, 467, 849, 1028
BstDEI	CTNAG	3 cut(s)	497, 609, 1091
BstDSI	CCRYGG	2 cut(s)	822, 939
BstENI	CCTNNNNNAGG	1 cut(s)	986
BstF5I	GGATG	3 cut(s)	326, 404, 835
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	3 cut(s)	212, 701, 1057
BstMAI	GTCTC	3 cut(s)	370, 629, 1079
BstMBI	GATC	3 cut(s)	209, 698, 1054
BstMWI	GCNNNNNNNGC	1 cut(s)	1027
BstNSI	RCATGY	1 cut(s)	907
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	285, 1118
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	708
BtgI	CCRYGG	2 cut(s)	822, 939
BtgZI	GCGATG	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	326, 404, 835
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	2 cut(s)	361, 842
Cac8I	GCNNGC	6 cut(s)	303, 307, 311, 467, 849, 1028
CfoI	GCGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	185, 597
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	691, 1099
CviAII	CATG	6 cut(s)	428, 754, 823, 895, 904, 940
CviQI	GTAC	2 cut(s)	691, 1099
DdeI	CTNAG	3 cut(s)	497, 609, 1091
DpnI	GATC	3 cut(s)	211, 700, 1056
DpnII	GATC	3 cut(s)	209, 698, 1054
DraI	TTTAAA	1 cut(s)	687
Eam1104I	CTCTTC	4 cut(s)	38, 563, 734, 806
EarI	CTCTTC	4 cut(s)	38, 563, 734, 806
Eco130I	CCWWGG	3 cut(s)	694, 822, 939
Eco24I	GRGCYC	1 cut(s)	952
Eco31I	GGTCTC	1 cut(s)	1079
Eco47I	GGWCC	2 cut(s)	185, 597
Eco57I	CTGAAG	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	986
EcoT14I	CCWWGG	3 cut(s)	694, 822, 939
EcoT38I	GRGCYC	1 cut(s)	952
ErhI	CCWWGG	3 cut(s)	694, 822, 939
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	6 cut(s)	431, 757, 826, 898, 907, 943
FatI	CATG	6 cut(s)	427, 753, 822, 894, 903, 939
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	4 cut(s)	299, 412, 1107, 1110
FokI	GGATG	3 cut(s)	333, 391, 842
FriOI	GRGCYC	1 cut(s)	952
Fsp4HI	GCNGC	4 cut(s)	299, 412, 1107, 1110
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	4 cut(s)	299, 412, 1107, 1110
GsaI	CCCAGC	2 cut(s)	567, 1106
HaeIII	GGCC	1 cut(s)	708
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	6 cut(s)	431, 757, 826, 898, 907, 943
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HincII	GTYRAC	2 cut(s)	519, 909
HindII	GTYRAC	2 cut(s)	519, 909
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	3 cut(s)	84, 1040, 1130
HpaI	GTTAAC	1 cut(s)	909
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	4 cut(s)	253, 503, 568, 593
Hpy166II	GTNNAC	3 cut(s)	494, 519, 909
Hpy188I	TCNGA	5 cut(s)	420, 805, 1045, 1094, 1138
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	3 cut(s)	494, 519, 909
HpyAV	CCTTC	6 cut(s)	108, 114, 119, 209, 249, 425
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	2 cut(s)	436, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1027
HpyF3I	CTNAG	3 cut(s)	497, 609, 1091
HpySE526I	ACGT	2 cut(s)	436, 521
Hsp92II	CATG	6 cut(s)	431, 757, 826, 898, 907, 943
HspAI	GCGC	1 cut(s)	367
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
KspAI	GTTAAC	1 cut(s)	909
Kzo9I	GATC	3 cut(s)	209, 698, 1054
LguI	GCTCTTC	2 cut(s)	38, 806
Lsp1109I	GCAGC	2 cut(s)	285, 1118
LweI	GCATC	3 cut(s)	311, 900, 1083
MaeII	ACGT	2 cut(s)	436, 521
MaeIII	GTNAC	3 cut(s)	274, 453, 840
MalI	GATC	3 cut(s)	211, 700, 1056
MboI	GATC	3 cut(s)	209, 698, 1054
MboII	GAAGA	7 cut(s)	25, 580, 596, 751, 782, 823, 1109
MfeI	CAATTG	1 cut(s)	644
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	952
MlyI	GAGTC	2 cut(s)	78, 1139
MroNI	GCCGGC	1 cut(s)	305
MseI	TTAA	5 cut(s)	75, 138, 540, 686, 908
MspI	CCGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	644
MwoI	GCNNNNNNNGC	1 cut(s)	1027
NaeI	GCCGGC	1 cut(s)	307
NcoI	CCATGG	2 cut(s)	822, 939
NdeII	GATC	3 cut(s)	209, 698, 1054
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	6 cut(s)	431, 757, 826, 898, 907, 943
NlaIV	GGNNCC	3 cut(s)	211, 598, 937
NmeAIII	GCCGAG	1 cut(s)	908
NmuCI	GTSAC	3 cut(s)	274, 453, 840
NspI	RCATGY	1 cut(s)	907
PciI	ACATGT	1 cut(s)	903
PciSI	GCTCTTC	2 cut(s)	38, 806
PdiI	GCCGGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	1040
PflMI	CCANNNNNTGG	1 cut(s)	945
PkrI	GCNGC	4 cut(s)	300, 413, 1108, 1111
PleI	GAGTC	2 cut(s)	78, 1138
PpsI	GAGTC	2 cut(s)	78, 1138
Ppu21I	YACGTR	1 cut(s)	437
PscI	ACATGT	1 cut(s)	903
Psp1406I	AACGTT	1 cut(s)	521
PspFI	CCCAGC	2 cut(s)	563, 1102
PspN4I	GGNNCC	3 cut(s)	211, 598, 937
PspPI	GGNCC	2 cut(s)	185, 597
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	2 cut(s)	692, 1100
RsaNI	GTAC	2 cut(s)	691, 1099
SapI	GCTCTTC	2 cut(s)	38, 806
SaqAI	TTAA	5 cut(s)	75, 138, 540, 686, 908
SatI	GCNGC	4 cut(s)	299, 412, 1107, 1110
Sau3AI	GATC	3 cut(s)	209, 698, 1054
Sau96I	GGNCC	2 cut(s)	185, 597
SchI	GAGTC	2 cut(s)	78, 1139
SduI	GDGCHC	1 cut(s)	952
SfaNI	GCATC	3 cut(s)	311, 900, 1083
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	2 cut(s)	185, 597
SmlI	CTYRAG	3 cut(s)	53, 373, 392
SmoI	CTYRAG	3 cut(s)	53, 373, 392
SsiI	CCGC	3 cut(s)	214, 412, 1110
SspI	AATATT	3 cut(s)	664, 761, 866
StyI	CCWWGG	3 cut(s)	694, 822, 939
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	2 cut(s)	439, 524
TaqI	TCGA	2 cut(s)	475, 528
TauI	GCSGC	2 cut(s)	414, 1112
TfiI	GAWTC	1 cut(s)	1040
Tru1I	TTAA	5 cut(s)	75, 138, 540, 686, 908
Tru9I	TTAA	5 cut(s)	75, 138, 540, 686, 908
TscAI	CASTG	2 cut(s)	368, 849
TseFI	GTSAC	3 cut(s)	274, 453, 840
TseI	GCWGC	2 cut(s)	298, 1106
Tsp45I	GTSAC	3 cut(s)	274, 453, 840
TspDTI	ATGAA	6 cut(s)	25, 416, 459, 527, 742, 891
TspRI	CASTG	2 cut(s)	368, 849
Van91I	CCANNNNNTGG	1 cut(s)	945
VpaK11BI	GGWCC	2 cut(s)	185, 597
XagI	CCTNNNNNAGG	1 cut(s)	986
XceI	RCATGY	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.