Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000431.1

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Forward (+)

14488 .. 16419

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggctagaggttctaaacaccacgattgccccataacctcaaagacaaaaagaaaattttgttctcaaccttctcagtcagtagtggatgatggtatactagaggctggggttgatactggggaagaacaagcttctgaaccctttacagatgcagatgaacctctaagtggtccatttctgggaggtcctcatgatccatcggtattgaagagctttaaaagtcatgtagcagctgctatatggtttaataagttaggacttgcatctagagttggttgtaggaaaattgggggttatttgacactgcttgaggcttggatatatgagcacttccggaatgtagtttcccctcatcttcgtgttgaatattcagagaatgaaccacgagtgaatcattgggaacctcgaaaagatgcaggtttgtcactagtttacgtgcaagctcttcgccaacaacttgatcatatgcaagcacacgaggtcatatgggatccatatcgtggtcataaggatgctcatccattattggaaatcacattttacacaggaacgcttaagtgtttagatattgtggaaccatattatcctaatagggttctaagacaacgtggtcgagttcaaacaattccttgcaacccttacaccccatcttgtgttcgacgagtttctgattccaaatcgcacaaggttgtgtatgagtaccttgatggattgtggcaaagatggcgagatcacgtgttagcagatgccaaccgaagcactccagttaagttttcatataactgcactccagaatacttatcgtggtaccaaaagatcacacatccctatgttcaacaccttgatcgggtgtctgctgcagttgattcaaatgaggaaaatcatgaagtcatgtcggacaaatataagacttttctcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

308

Amino Acids

35.42

Weight (kDa)

7.26

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	80 - 272	2e-24	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	612
Acc36I	ACCTGC	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	810
AccB1I	GGYRCC	1 cut(s)	810
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	97
AccIII	TCCGGA	1 cut(s)	336
AclWI	GGATC	3 cut(s)	191, 488, 501
AcsI	RAATTY	1 cut(s)	56
AcvI	CACGTG	1 cut(s)	739
AfaI	GTAC	2 cut(s)	704, 812
AfiI	CCNNNNNNNGG	4 cut(s)	170, 182, 503, 850
AflII	CTTAAG	1 cut(s)	557
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	5 cut(s)	211, 368, 623, 839, 873
AhlI	ACTAGT	1 cut(s)	430
AluBI	AGCT	4 cut(s)	134, 216, 236, 446
AluI	AGCT	4 cut(s)	134, 216, 236, 446
Alw21I	GWGCWC	1 cut(s)	333
AlwI	GGATC	3 cut(s)	191, 488, 501
Aor13HI	TCCGGA	1 cut(s)	336
ApeKI	GCWGC	3 cut(s)	233, 236, 860
ApoI	RAATTY	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	810
AspS9I	GGNCC	2 cut(s)	173, 188
AvaII	GGWCC	2 cut(s)	173, 188
BamHI	GGATCC	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	810
BauI	CACGAG	2 cut(s)	387, 479
BbrPI	CACGTG	1 cut(s)	739
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	223, 245, 847
BccI	CCATC	5 cut(s)	86, 208, 658, 704, 720
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BclI	TGATCA	1 cut(s)	463
BcuI	ACTAGT	1 cut(s)	430
BfaI	CTAG	4 cut(s)	6, 101, 270, 431
BfmI	CTRYAG	1 cut(s)	861
BfrI	CTTAAG	1 cut(s)	557
BfuAI	ACCTGC	1 cut(s)	410
BisI	GCNGC	3 cut(s)	234, 237, 861
BlsI	GCNGC	3 cut(s)	235, 238, 862
Bme18I	GGWCC	2 cut(s)	173, 188
BmgT120I	GGNCC	2 cut(s)	173, 188
BmiI	GGNNCC	4 cut(s)	405, 495, 579, 812
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	5 cut(s)	142, 275, 406, 505, 739
BmuI	ACTGGG	1 cut(s)	129
BpmI	CTGGAG	2 cut(s)	750, 777
BpuEI	CTTGAG	1 cut(s)	332
BsaAI	YACGTR	2 cut(s)	439, 739
BsaBI	GATNNNNATC	2 cut(s)	498, 519
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 182, 503, 850
Bse1I	ACTGG	2 cut(s)	124, 767
Bse8I	GATNNNNATC	2 cut(s)	498, 519
BseAI	TCCGGA	1 cut(s)	336
BseGI	GGATG	4 cut(s)	94, 520, 520, 826
BseJI	GATNNNNATC	2 cut(s)	498, 519
BseLI	CCNNNNNNNGG	4 cut(s)	170, 182, 503, 850
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	124, 767
BseXI	GCAGC	3 cut(s)	223, 245, 847
BseYI	CCCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	772
BshNI	GGYRCC	1 cut(s)	810
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	4 cut(s)	170, 182, 503, 850
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	6 cut(s)	196, 463, 493, 733, 819, 847
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	336
BspHI	TCATGA	2 cut(s)	193, 886
BspLI	GGNNCC	4 cut(s)	405, 495, 579, 812
BspMAI	CTGCAG	1 cut(s)	865
BspMI	ACCTGC	1 cut(s)	410
BspPI	GGATC	3 cut(s)	191, 488, 501
BspQI	GCTCTTC	2 cut(s)	206, 453
BspT107I	GGYRCC	1 cut(s)	810
BspTI	CTTAAG	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	124, 767
BssMI	GATC	6 cut(s)	196, 463, 493, 733, 819, 847
BssNAI	GTATAC	1 cut(s)	98
BssSI	CACGAG	2 cut(s)	387, 479
Bst1107I	GTATAC	1 cut(s)	98
Bst2BI	CACGAG	2 cut(s)	387, 479
Bst6I	CTCTTC	2 cut(s)	206, 453
BstAFI	CTTAAG	1 cut(s)	557
BstBAI	YACGTR	2 cut(s)	439, 739
BstC8I	GCNNGC	2 cut(s)	444, 474
BstDEI	CTNAG	3 cut(s)	75, 167, 602
BstF5I	GGATG	4 cut(s)	94, 520, 520, 826
BstKTI	GATC	6 cut(s)	199, 466, 496, 736, 822, 850
BstMBI	GATC	6 cut(s)	196, 463, 493, 733, 819, 847
BstMWI	GCNNNNNNNGC	1 cut(s)	727
BstSFI	CTRYAG	1 cut(s)	861
BstV1I	GCAGC	3 cut(s)	223, 245, 847
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BstZ17I	GTATAC	1 cut(s)	98
BtsCI	GGATG	4 cut(s)	94, 520, 520, 826
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	2 cut(s)	444, 474
CciI	TCATGA	2 cut(s)	193, 886
Cfr13I	GGNCC	2 cut(s)	173, 188
Csp6I	GTAC	2 cut(s)	703, 811
CviAII	CATG	4 cut(s)	194, 227, 887, 895
CviJI	RGCY	7 cut(s)	5, 107, 134, 216, 236, 317, 446
CviKI_1	RGCY	7 cut(s)	5, 107, 134, 216, 236, 317, 446
CviQI	GTAC	2 cut(s)	703, 811
DdeI	CTNAG	3 cut(s)	75, 167, 602
DpnI	GATC	6 cut(s)	198, 465, 495, 735, 821, 849
DpnII	GATC	6 cut(s)	196, 463, 493, 733, 819, 847
DraI	TTTAAA	1 cut(s)	220
DrdI	GACNNNNNNGTC	1 cut(s)	612
DseDI	GACNNNNNNGTC	1 cut(s)	612
Eam1104I	CTCTTC	2 cut(s)	206, 453
EarI	CTCTTC	2 cut(s)	206, 453
Eco47I	GGWCC	2 cut(s)	173, 188
Eco72I	CACGTG	1 cut(s)	739
EcoO109I	RGGNCCY	1 cut(s)	188
FaeI	CATG	4 cut(s)	197, 230, 890, 898
FatI	CATG	4 cut(s)	193, 226, 886, 894
FauNDI	CATATG	2 cut(s)	468, 488
FbaI	TGATCA	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	234, 237, 861
FokI	GGATG	4 cut(s)	101, 507, 527, 813
Fsp4HI	GCNGC	3 cut(s)	234, 237, 861
FspBI	CTAG	4 cut(s)	6, 101, 270, 431
GluI	GCNGC	3 cut(s)	234, 237, 861
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	2 cut(s)	750, 777
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	4 cut(s)	197, 230, 890, 898
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	3 cut(s)	394, 674, 869
HpaII	CCGG	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	98, 436
Hpy188I	TCNGA	4 cut(s)	139, 376, 673, 901
Hpy188III	TCNNGA	5 cut(s)	194, 270, 337, 794, 887
Hpy8I	GTNNAC	2 cut(s)	98, 436
Hpy99I	CGWCG	1 cut(s)	666
HpyAV	CCTTC	1 cut(s)	81
HpyCH4IV	ACGT	3 cut(s)	438, 610, 738
HpyCH4V	TGCA	8 cut(s)	155, 266, 419, 442, 472, 636, 789, 863
HpyF10VI	GCNNNNNNNGC	1 cut(s)	727
HpyF3I	CTNAG	3 cut(s)	75, 167, 602
HpySE526I	ACGT	3 cut(s)	438, 610, 738
Hsp92II	CATG	4 cut(s)	197, 230, 890, 898
Kpn2I	TCCGGA	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	814
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	6 cut(s)	196, 463, 493, 733, 819, 847
LguI	GCTCTTC	2 cut(s)	206, 453
LpnPI	CCDG	8 cut(s)	93, 105, 167, 350, 405, 534, 780, 807
Lsp1109I	GCAGC	3 cut(s)	223, 245, 847
LweI	GCATC	5 cut(s)	142, 275, 406, 505, 739
MaeI	CTAG	4 cut(s)	6, 101, 270, 431
MaeII	ACGT	3 cut(s)	438, 610, 738
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	6 cut(s)	198, 465, 495, 735, 821, 849
MboI	GATC	6 cut(s)	196, 463, 493, 733, 819, 847
MboII	GAAGA	4 cut(s)	137, 223, 350, 440
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	3 cut(s)	56, 288, 627
MmeI	TCCRAC	1 cut(s)	879
MroI	TCCGGA	1 cut(s)	336
MseI	TTAA	4 cut(s)	219, 249, 558, 771
MslI	CAYNNNNRTG	3 cut(s)	360, 513, 831
MspA1I	CMGCKG	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	727
NdeI	CATATG	2 cut(s)	468, 488
NdeII	GATC	6 cut(s)	196, 463, 493, 733, 819, 847
NlaIII	CATG	4 cut(s)	197, 230, 890, 898
NlaIV	GGNNCC	4 cut(s)	405, 495, 579, 812
NmuCI	GTSAC	1 cut(s)	426
PagI	TCATGA	2 cut(s)	193, 886
PciSI	GCTCTTC	2 cut(s)	206, 453
PfeI	GAWTC	3 cut(s)	394, 674, 869
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	3 cut(s)	235, 238, 862
PmaCI	CACGTG	1 cut(s)	739
PmlI	CACGTG	1 cut(s)	739
Ppu21I	YACGTR	2 cut(s)	439, 739
PpuMI	RGGWCCY	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	188
PspCI	CACGTG	1 cut(s)	739
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	4 cut(s)	405, 495, 579, 812
PspPI	GGNCC	2 cut(s)	173, 188
PspPPI	RGGWCCY	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	865
PsuI	RGATCY	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	704, 812
RsaNI	GTAC	2 cut(s)	703, 811
RseI	CAYNNNNRTG	3 cut(s)	360, 513, 831
SapI	GCTCTTC	2 cut(s)	206, 453
SaqAI	TTAA	4 cut(s)	219, 249, 558, 771
SatI	GCNGC	3 cut(s)	234, 237, 861
Sau3AI	GATC	6 cut(s)	196, 463, 493, 733, 819, 847
Sau96I	GGNCC	2 cut(s)	173, 188
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	5 cut(s)	142, 275, 406, 505, 739
SfcI	CTRYAG	1 cut(s)	861
SinI	GGWCC	2 cut(s)	173, 188
SmiMI	CAYNNNNRTG	3 cut(s)	360, 513, 831
SmlI	CTYRAG	2 cut(s)	311, 557
SmoI	CTYRAG	2 cut(s)	311, 557
SpeI	ACTAGT	1 cut(s)	430
Sse9I	AATT	3 cut(s)	56, 288, 627
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	4 cut(s)	6, 101, 270, 431
TaiI	ACGT	3 cut(s)	441, 613, 741
TaqI	TCGA	3 cut(s)	409, 616, 661
TasI	AATT	3 cut(s)	56, 288, 627
TfiI	GAWTC	3 cut(s)	394, 674, 869
Tru1I	TTAA	4 cut(s)	219, 249, 558, 771
Tru9I	TTAA	4 cut(s)	219, 249, 558, 771
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	3 cut(s)	233, 236, 860
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	4 cut(s)	174, 396, 768, 903
TspRI	CASTG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	503
Vha464I	CTTAAG	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	173, 188
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	4 cut(s)	6, 101, 270, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.