Rmu_sc0000533.1_g000058

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000533.1
OG0004257
Physical Location & Seq
Forward (+)
200721 .. 209135
8415 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
atgggtgaagcagtcaaggtagtggtttcggagtctgttctaaagaagaggaagagagaggaggaatgggccttggcaaagaagcaggggcttgaagcttccaagaagaagaatgctgagaatagaaagcttatttacaacaaattcaaacagtacaccaatgagtacgcagagaaggacaatgagttggtctggttgaaacttgaagcaaggctgaaaggaggattctatgttgagccagactctaagcaaggagcggactggtctggtggctcggggcagtgggctgttgggcagggctgtctgcagcgagctctacttgggccgccggggatggtgctgggcttcagatcgcggatgcgctgcaactctgcaaggatcggtgatgcgcgcgggagttggtggtggtgtgctggtgtccggcagaggaatctggaaaagcagcaggtggcgggggtccggtggagcgttatagaggtgctgggtgtgcagaggcggtgcttgcagcgtctatgtgggctggagatgccggagacggatcactgtagtcggagacggatcacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

188

Amino Acids

21.47

Weight (kDa)

9.84

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30_N PF08079 9 - 80 1.2e-18 Ribosomal L30 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 257
AccII CGCG 3 cut(s) 355, 391, 393
AciI CCGC 6 cut(s) 257, 326, 355, 393, 452, 496
AclWI GGATC 3 cut(s) 386, 546, 566
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 331
AfaI GTAC 2 cut(s) 155, 167
AgsI TTSAA 4 cut(s) 95, 148, 199, 206
AluBI AGCT 3 cut(s) 98, 130, 314
AluI AGCT 3 cut(s) 98, 130, 314
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 2 cut(s) 527, 547
AlwI GGATC 3 cut(s) 386, 546, 566
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 2 cut(s) 69, 323
ApeKI GCWGC 4 cut(s) 307, 363, 442, 505
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 3 cut(s) 363, 391, 393
AspS9I GGNCC 3 cut(s) 69, 323, 457
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 2 cut(s) 17, 395
AvaI CYCGRG 1 cut(s) 274
AvaII GGWCC 1 cut(s) 457
BanII GRGCYC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 4 cut(s) 319, 350, 454, 517
BccI CCATC 1 cut(s) 328
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 2 cut(s) 527, 547
BfmI CTRYAG 2 cut(s) 305, 544
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 5 cut(s) 308, 326, 364, 443, 506
BlsI GCNGC 5 cut(s) 309, 327, 365, 444, 507
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 457
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 3 cut(s) 69, 323, 457
BmiI GGNNCC 1 cut(s) 458
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 3 cut(s) 348, 376, 516
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 72, 329
BsaWI WCCGGW 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 72, 329
BseGI GGATG 2 cut(s) 339, 363
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 266
BsePI GCGCGC 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 4 cut(s) 319, 350, 454, 517
BseYI CCCAGC 2 cut(s) 340, 481
BsgI GTGCAG 1 cut(s) 509
Bsh1236I CGCG 3 cut(s) 355, 391, 393
BshFI GGCC 2 cut(s) 71, 325
BsiHKAI GWGCWC 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 4 cut(s) 329, 421, 460, 530
BsmAI GTCTC 2 cut(s) 527, 547
BsmBI CGTCTC 2 cut(s) 527, 547
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 2 cut(s) 71, 325
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 4 cut(s) 350, 378, 538, 558
BspACI CCGC 6 cut(s) 257, 326, 355, 393, 452, 496
BspANI GGCC 2 cut(s) 71, 325
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 3 cut(s) 355, 391, 393
BspLI GGNNCC 1 cut(s) 458
BspMAI CTGCAG 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 3 cut(s) 386, 546, 566
BsrBI CCGCTC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 72, 329
BssHII GCGCGC 1 cut(s) 389
BssMI GATC 4 cut(s) 350, 378, 538, 558
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 153, 545
Bst6I CTCTTC 2 cut(s) 41, 47
BstC8I GCNNGC 3 cut(s) 312, 391, 503
BstDEI CTNAG 2 cut(s) 117, 246
BstF5I GGATG 2 cut(s) 339, 363
BstFNI CGCG 3 cut(s) 355, 391, 393
BstHHI GCGC 3 cut(s) 363, 391, 393
BstKTI GATC 4 cut(s) 353, 381, 541, 561
BstMAI GTCTC 2 cut(s) 527, 547
BstMBI GATC 4 cut(s) 350, 378, 538, 558
BstMWI GCNNNNNNNGC 3 cut(s) 487, 502, 526
BstSCI CCNGG 1 cut(s) 328
BstSFI CTRYAG 2 cut(s) 305, 544
BstUI CGCG 3 cut(s) 355, 391, 393
BstV1I GCAGC 4 cut(s) 319, 350, 454, 517
BsuRI GGCC 2 cut(s) 71, 325
BtsCI GGATG 2 cut(s) 339, 363
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 287, 541
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 3 cut(s) 312, 391, 503
CfoI GCGC 3 cut(s) 363, 391, 393
Cfr13I GGNCC 3 cut(s) 69, 323, 457
CseI GACGC 1 cut(s) 497
Csp6I GTAC 2 cut(s) 154, 166
CviQI GTAC 2 cut(s) 154, 166
DdeI CTNAG 2 cut(s) 117, 246
DpnI GATC 4 cut(s) 352, 380, 540, 560
DpnII GATC 4 cut(s) 350, 378, 538, 558
Eam1104I CTCTTC 2 cut(s) 41, 47
EarI CTCTTC 2 cut(s) 41, 47
Ecl136II GAGCTC 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 316
Eco47I GGWCC 1 cut(s) 457
Eco53kI GAGCTC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 72
Esp3I CGTCTC 2 cut(s) 527, 547
FaiI YATR 3 cut(s) 231, 473, 514
FauI CCCGC 2 cut(s) 386, 445
Fnu4HI GCNGC 5 cut(s) 308, 326, 364, 443, 506
FokI GGATG 2 cut(s) 346, 370
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 5 cut(s) 308, 326, 364, 443, 506
GlaI GCGC 3 cut(s) 362, 390, 392
GluI GCNGC 5 cut(s) 308, 326, 364, 443, 506
GsaI CCCAGC 2 cut(s) 344, 485
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 2 cut(s) 71, 325
HapII CCGG 4 cut(s) 329, 421, 460, 530
HgaI GACGC 1 cut(s) 497
HhaI GCGC 3 cut(s) 363, 391, 393
Hin6I GCGC 3 cut(s) 361, 389, 391
HinP1I GCGC 3 cut(s) 361, 389, 391
HindIII AAGCTT 2 cut(s) 96, 128
HinfI GANTC 4 cut(s) 32, 225, 242, 430
HpaII CCGG 4 cut(s) 329, 421, 460, 530
HphI GGTGA 2 cut(s) 17, 395
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 3 cut(s) 31, 350, 552
Hpy188III TCNNGA 1 cut(s) 434
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 153, 545
HpyCH4V TGCA 5 cut(s) 307, 366, 374, 490, 505
HpyF10VI GCNNNNNNNGC 3 cut(s) 487, 502, 526
HpyF3I CTNAG 2 cut(s) 117, 246
HspAI GCGC 3 cut(s) 361, 389, 391
Kzo9I GATC 4 cut(s) 350, 378, 538, 558
LmnI GCTCC 2 cut(s) 254, 465
Lsp1109I GCAGC 4 cut(s) 319, 350, 454, 517
LweI GCATC 3 cut(s) 348, 376, 516
MalI GATC 4 cut(s) 352, 380, 540, 560
MbiI CCGCTC 1 cut(s) 257
MboI GATC 4 cut(s) 350, 378, 538, 558
MboII GAAGA 4 cut(s) 58, 64, 118, 121
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 1 cut(s) 143
MlyI GAGTC 2 cut(s) 41, 236
MmeI TCCRAC 1 cut(s) 530
MnlI CCTC 7 cut(s) 42, 52, 55, 215, 420, 469, 486
MspI CCGG 4 cut(s) 329, 421, 460, 530
MspR9I CCNGG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 118
MvnI CGCG 3 cut(s) 355, 391, 393
MwoI GCNNNNNNNGC 3 cut(s) 487, 502, 526
NciI CCSGG 1 cut(s) 330
NdeII GATC 4 cut(s) 350, 378, 538, 558
NlaIV GGNNCC 1 cut(s) 458
PaqCI CACCTGC 1 cut(s) 436
PauI GCGCGC 1 cut(s) 389
PctI GAATGC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 225, 430
PkrI GCNGC 5 cut(s) 309, 327, 365, 444, 507
PleI GAGTC 2 cut(s) 40, 236
PpsI GAGTC 2 cut(s) 40, 236
Psp124BI GAGCTC 1 cut(s) 316
PspFI CCCAGC 2 cut(s) 340, 481
PspN4I GGNNCC 1 cut(s) 458
PspPI GGNCC 3 cut(s) 69, 323, 457
PstI CTGCAG 1 cut(s) 309
PteI GCGCGC 1 cut(s) 389
RsaI GTAC 2 cut(s) 155, 167
RsaNI GTAC 2 cut(s) 154, 166
SacI GAGCTC 1 cut(s) 316
SatI GCNGC 5 cut(s) 308, 326, 364, 443, 506
Sau3AI GATC 4 cut(s) 350, 378, 538, 558
Sau96I GGNCC 3 cut(s) 69, 323, 457
SchI GAGTC 2 cut(s) 41, 236
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 1 cut(s) 316
SetI ASST 6 cut(s) 21, 100, 132, 316, 450, 480
SfaNI GCATC 3 cut(s) 348, 376, 516
SfcI CTRYAG 2 cut(s) 305, 544
SinI GGWCC 1 cut(s) 457
Sse9I AATT 1 cut(s) 143
SsiI CCGC 6 cut(s) 257, 326, 355, 393, 452, 496
SstI GAGCTC 1 cut(s) 316
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 153, 545
TasI AATT 1 cut(s) 143
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 2 cut(s) 225, 430
TscAI CASTG 2 cut(s) 287, 548
TseI GCWGC 4 cut(s) 307, 363, 442, 505
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 2 cut(s) 287, 548
VpaK11BI GGWCC 1 cut(s) 457
XapI RAATTY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.