Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001114.1

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Forward (+)

70114 .. 71916

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atggctagaggttctaaacaccatgattgccccacaacctcaaagacaaaaaggaaatttttttctcaaccttctcaatcggaagtggatgatggtgtactagaggatggggttgatactggggaagaacaagcttctgaaccatttacagatgcagataagcctctaagtggtccatttccaggaggtcctcatgatccatcgctattgaagagctttaaaagtcatgtagcagctgctatatggtttaataagggtgattccatatctgtacctgagggtgtgcggttagacaaaacttattatgcatctttactgtcatctacactaggagttactatagatgaggcaaagaatgaaatgagtcgatatggtggaaatgggttaggatttgcatccagagttggttgtgggcaaattgggggttatttgacattgcttgaggcttggatatatgagcacttccggaatgtagtttcccctcatcttcgtgttgaatattcagagaatgagccacgagtgaatcgttgggaacctaaaaaagatgcaggtttgtcactagtgtacgtgcaagctcttcgccaacagcttgatcatatgcaggcgcacgaggtcatatgggatccatatcgtggtcatagggaggctcatccattattggaaatcacattttacacaggaatgcttaagtgtttagatattgtggaaccatattatcctgatagagttctaagacaatttggtcgagttcaaacaattcctcggaacccttacaccccttctcgtgttcgacgagtttctgattctaaatcgtacaaggttgtgtatgagtactttgatggattgtggcaaagatggcgagatctcgtgttagcatatgcgaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

295

Amino Acids

33.56

Weight (kDa)

6.56

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	135 - 266	5.7e-23	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	741
Acc36I	ACCTGC	1 cut(s)	539
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccIII	TCCGGA	1 cut(s)	465
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	3 cut(s)	191, 617, 630
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	5 cut(s)	99, 273, 566, 815, 833
AfiI	CCNNNNNNNGG	3 cut(s)	170, 182, 632
AflII	CTTAAG	1 cut(s)	686
AgsI	TTSAA	3 cut(s)	211, 497, 752
AhlI	ACTAGT	1 cut(s)	559
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	5 cut(s)	134, 216, 236, 575, 589
AluI	AGCT	5 cut(s)	134, 216, 236, 575, 589
Alw21I	GWGCWC	1 cut(s)	462
AlwI	GGATC	3 cut(s)	191, 617, 630
Aor13HI	TCCGGA	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	233, 236
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	2 cut(s)	173, 188
AsuHPI	GGTGA	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	173, 188
AxyI	CCTNAGG	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	622
BauI	CACGAG	4 cut(s)	516, 608, 783, 866
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	223, 245
BccI	CCATC	5 cut(s)	86, 101, 208, 833, 849
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciT130I	CCWGG	1 cut(s)	183
BclI	TGATCA	1 cut(s)	592
BcuI	ACTAGT	1 cut(s)	559
BfaI	CTAG	4 cut(s)	6, 101, 329, 560
BfmI	CTRYAG	1 cut(s)	339
BfrI	CTTAAG	1 cut(s)	686
BfuAI	ACCTGC	1 cut(s)	539
BglII	AGATCT	1 cut(s)	862
BisI	GCNGC	2 cut(s)	234, 237
BlsI	GCNGC	2 cut(s)	235, 238
BmcAI	AGTACT	1 cut(s)	833
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	2 cut(s)	173, 188
BmgT120I	GGNCC	2 cut(s)	173, 188
BmiI	GGNNCC	4 cut(s)	534, 624, 708, 767
BmrFI	CCNGG	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	4 cut(s)	142, 317, 404, 535
BmuI	ACTGGG	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	461
BsaAI	YACGTR	1 cut(s)	568
BsaBI	GATNNNNATC	2 cut(s)	394, 627
BsaJI	CCNNGG	1 cut(s)	761
BsaWI	WCCGGW	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 182, 632
Bse1I	ACTGG	1 cut(s)	124
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	434
Bse8I	GATNNNNATC	2 cut(s)	394, 627
BseAI	TCCGGA	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	761
BseGI	GGATG	4 cut(s)	94, 112, 395, 649
BseJI	GATNNNNATC	2 cut(s)	394, 627
BseLI	CCNNNNNNNGG	3 cut(s)	170, 182, 632
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	223, 245
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	466
BslI	CCNNNNNNNGG	3 cut(s)	170, 182, 632
BsmI	GAATGC	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp13I	TCCGGA	1 cut(s)	465
Bsp143I	GATC	4 cut(s)	196, 592, 622, 862
BspACI	CCGC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	268
BspEI	TCCGGA	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	4 cut(s)	534, 624, 708, 767
BspMI	ACCTGC	1 cut(s)	539
BspPI	GGATC	3 cut(s)	191, 617, 630
BspQI	GCTCTTC	2 cut(s)	206, 582
BspTI	CTTAAG	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	761
BssMI	GATC	4 cut(s)	196, 592, 622, 862
BssSI	CACGAG	4 cut(s)	516, 608, 783, 866
Bst2BI	CACGAG	4 cut(s)	516, 608, 783, 866
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	2 cut(s)	206, 582
BstAFI	CTTAAG	1 cut(s)	686
BstBAI	YACGTR	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	573, 603
BstDEI	CTNAG	3 cut(s)	167, 276, 731
BstF5I	GGATG	4 cut(s)	94, 112, 395, 649
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	4 cut(s)	199, 595, 625, 865
BstMBI	GATC	4 cut(s)	196, 592, 622, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	856
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	223, 245
BstX2I	RGATCY	2 cut(s)	622, 862
BstYI	RGATCY	2 cut(s)	622, 862
Bsu36I	CCTNAGG	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	4 cut(s)	94, 112, 395, 649
BveI	ACCTGC	1 cut(s)	539
Cac8I	GCNNGC	2 cut(s)	573, 603
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	1 cut(s)	607
Cfr13I	GGNCC	2 cut(s)	173, 188
Csp6I	GTAC	5 cut(s)	98, 272, 565, 814, 832
CviAII	CATG	3 cut(s)	23, 194, 227
CviQI	GTAC	5 cut(s)	98, 272, 565, 814, 832
DdeI	CTNAG	3 cut(s)	167, 276, 731
DpnI	GATC	4 cut(s)	198, 594, 624, 864
DpnII	GATC	4 cut(s)	196, 592, 622, 862
DraI	TTTAAA	1 cut(s)	220
DrdI	GACNNNNNNGTC	1 cut(s)	741
DseDI	GACNNNNNNGTC	1 cut(s)	741
Eam1104I	CTCTTC	2 cut(s)	206, 582
EarI	CTCTTC	2 cut(s)	206, 582
Eco47I	GGWCC	2 cut(s)	173, 188
Eco81I	CCTNAGG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	310
FaeI	CATG	3 cut(s)	26, 197, 230
FatI	CATG	3 cut(s)	22, 193, 226
FauNDI	CATATG	3 cut(s)	597, 617, 877
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	234, 237
FokI	GGATG	4 cut(s)	101, 119, 382, 636
Fsp4HI	GCNGC	2 cut(s)	234, 237
FspBI	CTAG	4 cut(s)	6, 101, 329, 560
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	2 cut(s)	234, 237
HapII	CCGG	1 cut(s)	466
HhaI	GCGC	1 cut(s)	607
Hin1II	CATG	3 cut(s)	26, 197, 230
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	4 cut(s)	260, 364, 523, 803
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	98, 565
Hpy188I	TCNGA	5 cut(s)	82, 139, 505, 765, 802
Hpy188III	TCNNGA	4 cut(s)	194, 399, 466, 719
Hpy8I	GTNNAC	2 cut(s)	98, 565
Hpy99I	CGWCG	1 cut(s)	795
HpyAV	CCTTC	2 cut(s)	81, 789
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	6 cut(s)	155, 308, 395, 548, 571, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	856
HpyF3I	CTNAG	3 cut(s)	167, 276, 731
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	3 cut(s)	26, 197, 230
HspAI	GCGC	1 cut(s)	605
Kpn2I	TCCGGA	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	196, 592, 622, 862
LguI	GCTCTTC	2 cut(s)	206, 582
Lsp1109I	GCAGC	2 cut(s)	223, 245
LweI	GCATC	4 cut(s)	142, 317, 404, 535
MaeI	CTAG	4 cut(s)	6, 101, 329, 560
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	334, 555
MalI	GATC	4 cut(s)	198, 594, 624, 864
MboI	GATC	4 cut(s)	196, 592, 622, 862
MboII	GAAGA	4 cut(s)	137, 223, 479, 569
MflI	RGATCY	2 cut(s)	622, 862
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	4 cut(s)	56, 417, 737, 756
MlyI	GAGTC	1 cut(s)	373
Mph1103I	ATGCAT	1 cut(s)	310
MroI	TCCGGA	1 cut(s)	465
MseI	TTAA	3 cut(s)	219, 249, 687
MslI	CAYNNNNRTG	2 cut(s)	489, 680
MspA1I	CMGCKG	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	1 cut(s)	466
MspR9I	CCNGG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	856
NdeI	CATATG	3 cut(s)	597, 617, 877
NdeII	GATC	4 cut(s)	196, 592, 622, 862
NlaIII	CATG	3 cut(s)	26, 197, 230
NlaIV	GGNNCC	4 cut(s)	534, 624, 708, 767
NmuCI	GTSAC	1 cut(s)	555
NsiI	ATGCAT	1 cut(s)	310
PagI	TCATGA	1 cut(s)	193
PciSI	GCTCTTC	2 cut(s)	206, 582
PcsI	WCGNNNNNNNCGW	2 cut(s)	523, 790
PctI	GAATGC	1 cut(s)	687
PfeI	GAWTC	3 cut(s)	260, 523, 803
PflMI	CCANNNNNTGG	1 cut(s)	632
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	235, 238
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
Ppu21I	YACGTR	1 cut(s)	568
PpuMI	RGGWCCY	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	4 cut(s)	534, 624, 708, 767
PspPI	GGNCC	2 cut(s)	173, 188
PspPPI	RGGWCCY	1 cut(s)	188
PsuI	RGATCY	2 cut(s)	622, 862
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	5 cut(s)	99, 273, 566, 815, 833
RsaNI	GTAC	5 cut(s)	98, 272, 565, 814, 832
RseI	CAYNNNNRTG	2 cut(s)	489, 680
SapI	GCTCTTC	2 cut(s)	206, 582
SaqAI	TTAA	3 cut(s)	219, 249, 687
SatI	GCNGC	2 cut(s)	234, 237
Sau3AI	GATC	4 cut(s)	196, 592, 622, 862
Sau96I	GGNCC	2 cut(s)	173, 188
ScaI	AGTACT	1 cut(s)	833
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	4 cut(s)	142, 317, 404, 535
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	2 cut(s)	173, 188
SmiMI	CAYNNNNRTG	2 cut(s)	489, 680
SmlI	CTYRAG	2 cut(s)	440, 686
SmoI	CTYRAG	2 cut(s)	440, 686
SpeI	ACTAGT	1 cut(s)	559
Sse9I	AATT	4 cut(s)	56, 417, 737, 756
SsiI	CCGC	1 cut(s)	286
SspI	AATATT	1 cut(s)	500
SspMI	CTAG	4 cut(s)	6, 101, 329, 560
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	3 cut(s)	367, 745, 790
TasI	AATT	4 cut(s)	56, 417, 737, 756
TatI	WGTACW	2 cut(s)	97, 831
TfiI	GAWTC	3 cut(s)	260, 523, 803
Tru1I	TTAA	3 cut(s)	219, 249, 687
Tru9I	TTAA	3 cut(s)	219, 249, 687
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	2 cut(s)	233, 236
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	1 cut(s)	372
Van91I	CCANNNNNTGG	1 cut(s)	632
Vha464I	CTTAAG	1 cut(s)	686
VpaK11BI	GGWCC	2 cut(s)	173, 188
XapI	RAATTY	1 cut(s)	56
XspI	CTAG	4 cut(s)	6, 101, 329, 560
ZrmI	AGTACT	1 cut(s)	833
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.