Rmu_sc0001301.1_g000082

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001301.1
OG0001882
Physical Location & Seq
Reverse (-)
418921 .. 420528
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 837 bp
atgaccaccctctctcttcctcctccgagtttcaatcctctaaaactcgctcccaaatccctcattccacccaaaccggcctccgtctccgcctccgaacccgacccgtcctttacagaaaccccaaccctaggtccaaacccgacccaatcccccaccacgctcctccacctcgctttcaaccaagaccacacctgcttctccgccgccaccgactccggcttccgcgtctacacctgcgaccccttccgccacttccacagcgacccctccggtctacgcggcggccttggattcgtccgcatccctctaatcgacgacttctccctcaccctcaacgtcggcgaccgatgcctcctcgttggatccaacggcgccggcaaaaccatgatcctcaggattctcggaggcaagcacatggtcgaccccagcatggtcctggttctgggtcgctcggctttccacgacactgctctcaccggcttcggcgacctgtcgtacctaggcggagagtggcggcgtgacatggcgtttgctggtttagacgttccgatacagatggatgtttgggctgataaattgatcaacggggtagctgggattgacccacaaaggagagctgagctgatcaaggtgcttctgcttgatgagatcgcggtggaccttgatgtgctagcgagggcggacctgctccagttcttgaggaaggaatgtgaggagcgagaagagctgcacattcttgaaccatcgagactcccagaatcaattgctgcacctgcacctgcatctgcactagtcctcagttccggccagcctatgcccaacgcaaaggcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

278

Amino Acids

29.96

Weight (kDa)

5.34

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 106 - 153 2.3e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 203, 245, 784, 790
Acc36I ACCTGC 5 cut(s) 203, 245, 696, 784, 790
AccB1I GGYRCC 1 cut(s) 374
AccI GTMKAC 3 cut(s) 231, 277, 423
AccII CGCG 3 cut(s) 228, 282, 656
AclWI GGATC 3 cut(s) 360, 373, 385
AcoI YGGCCR 1 cut(s) 808
AcyI GRCGYC 1 cut(s) 375
AfaI GTAC 1 cut(s) 500
AfiI CCNNNNNNNGG 3 cut(s) 131, 433, 445
AgsI TTSAA 3 cut(s) 34, 181, 743
AhlI ACTAGT 1 cut(s) 793
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 4 cut(s) 596, 620, 625, 730
AluI AGCT 4 cut(s) 596, 620, 625, 730
Alw26I GTCTC 2 cut(s) 91, 745
AlwI GGATC 3 cut(s) 360, 373, 385
AoxI GGCC 3 cut(s) 78, 286, 808
ApeKI GCWGC 2 cut(s) 730, 770
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AspA2I CCTAGG 2 cut(s) 130, 502
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 4 cut(s) 134, 436, 661, 685
AsuHPI GGTGA 2 cut(s) 322, 469
AsuNHI GCTAGC 1 cut(s) 673
AvaII GGWCC 4 cut(s) 134, 436, 661, 685
AvrII CCTAGG 2 cut(s) 130, 502
AxyI CCTNAGG 1 cut(s) 395
BamHI GGATCC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 717, 757
BccI CCATC 2 cut(s) 553, 754
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 2 cut(s) 582, 627
BcoDI GTCTC 2 cut(s) 91, 745
BcuI ACTAGT 1 cut(s) 793
BfaI CTAG 4 cut(s) 131, 503, 674, 794
BfoI RGCGCY 1 cut(s) 378
BfuAI ACCTGC 5 cut(s) 203, 245, 696, 784, 790
BisI GCNGC 6 cut(s) 207, 283, 286, 518, 731, 771
BlnI CCTAGG 2 cut(s) 130, 502
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 6 cut(s) 208, 284, 287, 519, 732, 772
Bme1390I CCNGG 1 cut(s) 440
Bme18I GGWCC 4 cut(s) 134, 436, 661, 685
BmgT120I GGNCC 4 cut(s) 134, 436, 661, 685
BmiI GGNNCC 2 cut(s) 367, 376
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 3 cut(s) 312, 341, 794
BmtI GCTAGC 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 677
Bpu1102I GCTNAGC 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 721
BsaHI GRCGYC 1 cut(s) 375
BsaJI CCNNGG 3 cut(s) 130, 289, 502
BsaWI WCCGGW 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 433, 445
Bse118I RCCGGY 3 cut(s) 76, 377, 479
Bse1I ACTGG 1 cut(s) 694
Bse21I CCTNAGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 130, 289, 502
BseGI GGATG 2 cut(s) 303, 568
BseLI CCNNNNNNNGG 3 cut(s) 131, 433, 445
BseMII CTCAG 3 cut(s) 409, 612, 814
BseNI ACTGG 1 cut(s) 694
BseRI GAGGAG 4 cut(s) 12, 155, 347, 731
BseXI GCAGC 2 cut(s) 717, 757
BseYI CCCAGC 2 cut(s) 428, 596
BsgI GTGCAG 4 cut(s) 716, 756, 762, 774
Bsh1236I CGCG 3 cut(s) 228, 282, 656
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 3 cut(s) 80, 288, 810
BshNI GGYRCC 1 cut(s) 374
BsiEI CGRYCG 1 cut(s) 349
BsiSI CCGG 6 cut(s) 77, 219, 273, 378, 480, 807
BslI CCNNNNNNNGG 3 cut(s) 131, 433, 445
BsmAI GTCTC 2 cut(s) 91, 745
BsmBI CGTCTC 1 cut(s) 91
BsnI GGCC 3 cut(s) 80, 288, 810
Bsp143I GATC 5 cut(s) 365, 390, 582, 627, 651
Bsp1720I GCTNAGC 1 cut(s) 621
BspANI GGCC 3 cut(s) 80, 288, 810
BspCNI CTCAG 3 cut(s) 408, 613, 813
BspFNI CGCG 3 cut(s) 228, 282, 656
BspLI GGNNCC 2 cut(s) 367, 376
BspMI ACCTGC 5 cut(s) 203, 245, 696, 784, 790
BspOI GCTAGC 1 cut(s) 677
BspPI GGATC 3 cut(s) 360, 373, 385
BspQI GCTCTTC 1 cut(s) 720
BspT107I GGYRCC 1 cut(s) 374
BsrFI RCCGGY 3 cut(s) 76, 377, 479
BsrI ACTGG 1 cut(s) 694
BssAI RCCGGY 3 cut(s) 76, 377, 479
BssECI CCNNGG 3 cut(s) 130, 289, 502
BssMI GATC 5 cut(s) 365, 390, 582, 627, 651
BssNI GRCGYC 1 cut(s) 375
BssT1I CCWWGG 3 cut(s) 130, 289, 502
Bst2UI CCWGG 1 cut(s) 440
Bst6I CTCTTC 2 cut(s) 21, 720
BstACI GRCGYC 1 cut(s) 375
BstC8I GCNNGC 4 cut(s) 379, 413, 675, 812
BstDEI CTNAG 3 cut(s) 395, 621, 800
BstF5I GGATG 2 cut(s) 303, 568
BstFNI CGCG 3 cut(s) 228, 282, 656
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 5 cut(s) 368, 393, 585, 630, 654
BstMAI GTCTC 2 cut(s) 91, 745
BstMBI GATC 5 cut(s) 365, 390, 582, 627, 651
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 3 cut(s) 351, 727, 776
BstNI CCWGG 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 438
BstUI CGCG 3 cut(s) 228, 282, 656
BstV1I GCAGC 2 cut(s) 717, 757
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
Bsu36I CCTNAGG 1 cut(s) 395
BsuRI GGCC 3 cut(s) 80, 288, 810
BtsCI GGATG 2 cut(s) 303, 568
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
BveI ACCTGC 5 cut(s) 203, 245, 696, 784, 790
Cac8I GCNNGC 4 cut(s) 379, 413, 675, 812
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 3 cut(s) 76, 377, 479
Cfr13I GGNCC 4 cut(s) 134, 436, 661, 685
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 499
CviAII CATG 4 cut(s) 388, 418, 433, 526
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 3 cut(s) 395, 621, 800
DinI GGCGCC 1 cut(s) 376
DpnI GATC 5 cut(s) 367, 392, 584, 629, 653
DpnII GATC 5 cut(s) 365, 390, 582, 627, 651
EaeI YGGCCR 1 cut(s) 808
Eam1104I CTCTTC 2 cut(s) 21, 720
EarI CTCTTC 2 cut(s) 21, 720
EciI GGCGGA 5 cut(s) 79, 193, 239, 522, 698
Eco130I CCWWGG 3 cut(s) 130, 289, 502
Eco47I GGWCC 4 cut(s) 134, 436, 661, 685
Eco81I CCTNAGG 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 438
EcoT14I CCWWGG 3 cut(s) 130, 289, 502
EgeI GGCGCC 1 cut(s) 376
EheI GGCGCC 1 cut(s) 376
ErhI CCWWGG 3 cut(s) 130, 289, 502
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 4 cut(s) 391, 421, 436, 529
FaiI YATR 6 cut(s) 389, 419, 434, 527, 818, 835
FatI CATG 4 cut(s) 387, 417, 432, 525
FbaI TGATCA 2 cut(s) 582, 627
FblI GTMKAC 3 cut(s) 231, 277, 423
Fnu4HI GCNGC 6 cut(s) 207, 283, 286, 518, 731, 771
FokI GGATG 2 cut(s) 290, 575
Fsp4HI GCNGC 6 cut(s) 207, 283, 286, 518, 731, 771
FspBI CTAG 4 cut(s) 131, 503, 674, 794
GlaI GCGC 1 cut(s) 376
GluI GCNGC 6 cut(s) 207, 283, 286, 518, 731, 771
GsaI CCCAGC 2 cut(s) 432, 600
GsuI CTGGAG 1 cut(s) 677
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 3 cut(s) 80, 288, 810
HapII CCGG 6 cut(s) 77, 219, 273, 378, 480, 807
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 4 cut(s) 391, 421, 436, 529
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 5 cut(s) 215, 294, 400, 753, 761
HpaII CCGG 6 cut(s) 77, 219, 273, 378, 480, 807
HphI GGTGA 2 cut(s) 322, 469
Hpy166II GTNNAC 4 cut(s) 232, 278, 424, 661
Hpy188I TCNGA 4 cut(s) 27, 97, 407, 552
Hpy188III TCNNGA 4 cut(s) 397, 700, 740, 750
Hpy8I GTNNAC 4 cut(s) 232, 278, 424, 661
Hpy99I CGWCG 2 cut(s) 320, 344
HpyAV CCTTC 2 cut(s) 256, 700
HpyCH4IV ACGT 2 cut(s) 339, 546
HpyCH4V TGCA 5 cut(s) 733, 773, 779, 785, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 351, 727, 776
HpyF3I CTNAG 3 cut(s) 395, 621, 800
HpySE526I ACGT 2 cut(s) 339, 546
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 4 cut(s) 391, 421, 436, 529
HspAI GCGC 1 cut(s) 375
KasI GGCGCC 1 cut(s) 374
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Ksp22I TGATCA 2 cut(s) 582, 627
Kzo9I GATC 5 cut(s) 365, 390, 582, 627, 651
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 4 cut(s) 55, 168, 696, 718
Lsp1109I GCAGC 2 cut(s) 717, 757
LweI GCATC 3 cut(s) 312, 341, 794
MaeI CTAG 4 cut(s) 131, 503, 674, 794
MaeII ACGT 2 cut(s) 339, 546
MaeIII GTNAC 1 cut(s) 521
MalI GATC 5 cut(s) 367, 392, 584, 629, 653
MboI GATC 5 cut(s) 365, 390, 582, 627, 651
MboII GAAGA 2 cut(s) 8, 737
MfeI CAATTG 1 cut(s) 765
MflI RGATCY 1 cut(s) 365
MluCI AATT 2 cut(s) 578, 765
Mly113I GGCGCC 1 cut(s) 375
MlyI GAGTC 2 cut(s) 209, 747
MmeI TCCRAC 2 cut(s) 343, 393
MroNI GCCGGC 1 cut(s) 377
MspI CCGG 6 cut(s) 77, 219, 273, 378, 480, 807
MspR9I CCNGG 1 cut(s) 440
MunI CAATTG 1 cut(s) 765
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 3 cut(s) 228, 282, 656
MwoI GCNNNNNNNGC 3 cut(s) 351, 727, 776
NaeI GCCGGC 1 cut(s) 379
NarI GGCGCC 1 cut(s) 375
NdeII GATC 5 cut(s) 365, 390, 582, 627, 651
NgoMIV GCCGGC 1 cut(s) 377
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 4 cut(s) 391, 421, 436, 529
NlaIV GGNNCC 2 cut(s) 367, 376
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 521
PaqCI CACCTGC 4 cut(s) 203, 245, 784, 790
PciSI GCTCTTC 1 cut(s) 720
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 3 cut(s) 294, 400, 761
PkrI GCNGC 6 cut(s) 208, 284, 287, 519, 732, 772
PleI GAGTC 2 cut(s) 209, 747
PluTI GGCGCC 1 cut(s) 378
PpsI GAGTC 2 cut(s) 209, 747
Psp6I CCWGG 1 cut(s) 438
PspFI CCCAGC 2 cut(s) 428, 596
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 2 cut(s) 367, 376
PspPI GGNCC 4 cut(s) 134, 436, 661, 685
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
SalI GTCGAC 1 cut(s) 422
SapI GCTCTTC 1 cut(s) 720
SatI GCNGC 6 cut(s) 207, 283, 286, 518, 731, 771
Sau3AI GATC 5 cut(s) 365, 390, 582, 627, 651
Sau96I GGNCC 4 cut(s) 134, 436, 661, 685
SchI GAGTC 2 cut(s) 209, 747
ScrFI CCNGG 1 cut(s) 440
SfaNI GCATC 3 cut(s) 312, 341, 794
SfoI GGCGCC 1 cut(s) 376
SinI GGWCC 4 cut(s) 134, 436, 661, 685
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
SpeI ACTAGT 1 cut(s) 793
Sse9I AATT 2 cut(s) 578, 765
SspDI GGCGCC 1 cut(s) 374
SspMI CTAG 4 cut(s) 131, 503, 674, 794
StyD4I CCNGG 1 cut(s) 438
StyI CCWWGG 3 cut(s) 130, 289, 502
TaiI ACGT 2 cut(s) 342, 549
TaqI TCGA 3 cut(s) 315, 423, 749
TaqII GACCGA 1 cut(s) 363
TasI AATT 2 cut(s) 578, 765
TauI GCSGC 4 cut(s) 209, 285, 288, 520
TfiI GAWTC 3 cut(s) 294, 400, 761
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 2 cut(s) 730, 770
Tsp45I GTSAC 1 cut(s) 521
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 4 cut(s) 134, 436, 661, 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XmaJI CCTAGG 2 cut(s) 130, 502
XmiI GTMKAC 3 cut(s) 231, 277, 423
XspI CTAG 4 cut(s) 131, 503, 674, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.