Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001395.1

Orthogroup ID

OG0002729

Physical Location & Seq

Genomic Coordinates Reverse (-)

6710 .. 10383

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgaaggaggtgatgttcaccttttggctaggtagctctttttcccatgctcaatacatttcttcctctggtccagatgaaggaggtacgccacaaatcacaggaaagattgttattgccattcaaatagttggtgagggggaagctgttcatccacgagtttgttggcactgtcataaacaagatgttctggttgttggggttgggaagtgtgttctacgaattgatactactaaagttgcaaagggtgaagtccctactgctgaggttcctattaagtgtcctgttgaaaagctcattgatggggtccaatttgttggtaaacaggatggagtggtgacagatttatcaatgtgccaatggatgaccacctggctggtttctgcttctatggatggaactgcatatgctgaacttcttgaggaagaagcaatagatattccagcatggtttacttttgcttctaaagatggaattaatgtggtaacaagcaaaccaatagtgatataccccaacagtggtgagacctatgatggtcagagcaagcaatgggtgccatcgagtgggcgggttgatgaagagtttgcagaaatagtcatagcgaagtggcgtgaggctggggcttccctgtttggaggctgctgcagaacaactccaaataccataagggcaatatctaaggctctttctaataagtcttttgcagttaacgacgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000932 GO:0000956 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009933 GO:0009965 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010071 GO:0010072 GO:0010154 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0022414 GO:0022622 GO:0023052 GO:0031086 GO:0031087 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0046983 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048532 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090304 GO:0090305 GO:0090421 GO:0097159 GO:0099402 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1905392 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ge1_WD40

Protein Analysis

239

Amino Acids

25.89

Weight (kDa)

5.15

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S-methyl_trans	PF02574	164 - 229	2.2e-13	Homocysteine S-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22740
fragaria_vesca	FvH4_4g00800 FvH4_4g00800 FvH4_4g00800
malus_domestica	MD00G1181400.v1.1
prunus_persica	Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1 Prupe.1G018900_v2.0.a1
pyrus_communis	pycom13g17110
rosa_chinensis	RchiOBHm_Chr4g0386691 RchiOBHm_Chr4g0386711 RchiOBHm_Chr4g0386841 RchiOBHm_Chr4g0386961 RchiOBHm_Chr4g0386981 RchiOBHm_Chr4g0387271 RchiOBHm_Chr4g0387331 RchiOBHm_Chr4g0387351 RchiOBHm_Chr4g0387451 RchiOBHm_Chr7g0204331
rosa_multiflora	Rmu_sc0000013.1_g000020 Rmu_sc0000013.1_g000025 Rmu_sc0001317.1_g000013 Rmu_sc0001395.1_g000003 Rmu_sc0001942.1_g000050 Rmu_sc0006571.1_g000023 Rmu_sc0006648.1_g000005 Rmu_sc0027325.1_g000001
rosa_roxburghii	Rroxscaffold_5G00334040 Rroxscaffold_5G00334070
rosa_rugosa	Rorug03G0308800 Rorug03G0309400 Rorug03G0323000
rosa_samantha	Rh1DG032500 Rh4AG015400 Rh4DG011100
rosa_wichuraiana	Rw4G000880 Rw4G000920 Rw4G000950 Rw4G001260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AccB7I	CCANNNNNTGG	1 cut(s)	563
AciI	CCGC	1 cut(s)	568
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	3 cut(s)	80, 518, 563
AgsI	TTSAA	2 cut(s)	125, 290
AjnI	CCWGG	1 cut(s)	371
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	3 cut(s)	36, 146, 295
AluI	AGCT	3 cut(s)	36, 146, 295
Alw26I	GTCTC	1 cut(s)	518
ApeKI	GCWGC	2 cut(s)	639, 642
AseI	ATTAAT	1 cut(s)	477
Asp700I	GAANNNNTTC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	71, 307
AsuHPI	GGTGA	6 cut(s)	10, 22, 146, 260, 349, 533
AvaII	GGWCC	2 cut(s)	71, 307
BanI	GGYRCC	1 cut(s)	553
BauI	CACGAG	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	626, 629
BccI	CCATC	6 cut(s)	296, 323, 389, 464, 527, 565
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	643
BisI	GCNGC	2 cut(s)	640, 643
BlsI	GCNGC	2 cut(s)	641, 644
Bme1390I	CCNGG	1 cut(s)	373
Bme18I	GGWCC	2 cut(s)	71, 307
BmgT120I	GGNCC	2 cut(s)	71, 307
BmiI	GGNNCC	3 cut(s)	270, 308, 555
BmrFI	CCNGG	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	518
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 518, 563
Bse3DI	GCAATG	1 cut(s)	554
BseBI	CCWGG	1 cut(s)	373
BseGI	GGATG	4 cut(s)	151, 334, 369, 400
BseLI	CCNNNNNNNGG	3 cut(s)	80, 518, 563
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	626, 629
BseYI	CCCAGC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	3 cut(s)	80, 518, 563
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	518
BspACI	CCGC	1 cut(s)	568
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	270, 308, 555
BspMAI	CTGCAG	1 cut(s)	647
BspT107I	GGYRCC	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	554
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	173, 518
Bst6I	CTCTTC	1 cut(s)	573
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	545
BstDEI	CTNAG	3 cut(s)	264, 678, 717
BstF5I	GGATG	4 cut(s)	151, 334, 369, 400
BstMAI	GTCTC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	1 cut(s)	643
BstV1I	GCAGC	2 cut(s)	626, 629
BstXI	CCANNNNNNTGG	2 cut(s)	317, 376
BtsCI	GGATG	4 cut(s)	151, 334, 369, 400
BtsIMutI	CAGTG	2 cut(s)	169, 523
Cac8I	GCNNGC	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	71, 307
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	2 cut(s)	47, 447
CviJI	RGCY	9 cut(s)	28, 36, 146, 295, 376, 617, 623, 639, 683
CviKI_1	RGCY	9 cut(s)	28, 36, 146, 295, 376, 617, 623, 639, 683
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	3 cut(s)	264, 678, 717
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	518
Eco47I	GGWCC	2 cut(s)	71, 307
EcoRII	CCWGG	1 cut(s)	371
FaeI	CATG	2 cut(s)	50, 450
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	2 cut(s)	46, 446
FauI	CCCGC	1 cut(s)	561
FauNDI	CATATG	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	640, 643
FokI	GGATG	4 cut(s)	138, 341, 376, 407
Fsp4HI	GCNGC	2 cut(s)	640, 643
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	2 cut(s)	640, 643
GsaI	CCCAGC	1 cut(s)	621
Hin1II	CATG	2 cut(s)	50, 450
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HpaI	GTTAAC	1 cut(s)	709
HphI	GGTGA	6 cut(s)	10, 22, 146, 260, 349, 533
Hpy166II	GTNNAC	4 cut(s)	18, 323, 453, 709
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	2 cut(s)	74, 419
Hpy8I	GTNNAC	4 cut(s)	18, 323, 453, 709
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	2 cut(s)	173, 518
HpyCH4V	TGCA	5 cut(s)	242, 404, 587, 645, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	3 cut(s)	264, 678, 717
Hsp92II	CATG	2 cut(s)	50, 450
KspAI	GTTAAC	1 cut(s)	709
Lsp1109I	GCAGC	2 cut(s)	626, 629
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	337, 484
MboII	GAAGA	3 cut(s)	54, 437, 590
MluCI	AATT	3 cut(s)	222, 311, 474
MnlI	CCTC	7 cut(s)	76, 77, 130, 259, 415, 607, 629
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	3 cut(s)	276, 477, 708
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	553
NdeI	CATATG	1 cut(s)	406
NlaIII	CATG	2 cut(s)	50, 450
NlaIV	GGNNCC	3 cut(s)	270, 308, 555
NmuCI	GTSAC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	2 cut(s)	641, 644
PshBI	ATTAAT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	3 cut(s)	270, 308, 555
PspPI	GGNCC	2 cut(s)	71, 307
PstI	CTGCAG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	276, 477, 708
SatI	GCNGC	2 cut(s)	640, 643
Sau96I	GGNCC	2 cut(s)	71, 307
ScrFI	CCNGG	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	643
SinI	GGWCC	2 cut(s)	71, 307
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	222, 311, 474
SsiI	CCGC	1 cut(s)	568
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	173, 518
TaqI	TCGA	1 cut(s)	560
TasI	AATT	3 cut(s)	222, 311, 474
Tru1I	TTAA	3 cut(s)	276, 477, 708
Tru9I	TTAA	3 cut(s)	276, 477, 708
TscAI	CASTG	2 cut(s)	176, 523
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	639, 642
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	4 cut(s)	17, 93, 140, 591
TspRI	CASTG	2 cut(s)	176, 523
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	71, 307
VspI	ATTAAT	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.