Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003507.1

Orthogroup ID

OG0002275

Physical Location & Seq

Genomic Coordinates Forward (+)

42034 .. 44072

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggctatggcgattcgttctgcactcgcaaagctggcgagtaactctgttcacaagaacagaagtggaattctgatgcttagggcttttgctatcgacaaaaacctcgatcgccaaagccgggccgtttcggggtttcctgccggtcattacttccgtcaccgattcgattatggaagctataaaagcaaaaaaaaggagcttaaggtatttgattattatatggatttaggaggattagagcctgcccgtttcgccatggaagagttcaacaagcgaaagaaaatgcaactgcagtttgtgagagttgtcaaggcacataggcatctgctgtgcacaggaattagcagcctttatgatataacattggaggcagttgatgccggtgtcgctaaactttaccaagcaaaagtttcagtaaatttcactgatggcatgtttttggaatggttctgtcttgttgtcgatgatgggtgccctatagcactatttgatcacctagaaaacttttttgctcagaaggacaatgaagacaaagcggagagtcaaattccgatgtgtaaaaagcagaatgttaaactccagtttaagagagtggtgaacggaagcaagctgtggtgggaggattctttttatctaacattggaggcagcagatgctggtgtgatgaaaatttaccaagcagaactgtttttgccagatgacgataagattaagcatcccaattctaagctcattctgtttggccatgttgatgataatgggagattgtctatactaattgataagaggaatgaagaatgcacaaaagagattttgggatctgaagatattattacagcataccagcaaggttactgccgttacaaggattctaatgatttcattccaacctttttgagatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 ko03010 map00040 map01100 map03010

Pfam Domains

Protein Families

Ribosomal_L18

Protein Analysis

302

Amino Acids

34.81

Weight (kDa)

8.56

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	83 - 139	2.9e-06	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002275)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36030 FvH4_6g36030 FvH4_6g36030
malus_domestica	MD17G1149700.v1.1
pyrus_communis	pycom17g14320
rosa_chinensis	RchiOBHm_Chr2g0143241 RchiOBHm_Chr2g0143301 RchiOBHm_Chr6g0253161 RchiOBHm_Chr7g0231321
rosa_laevigata	RLG00000012687 RLG00000020018 RLG00000020022 RLG00000020025 RLG00000036534 RLG00000036535
rosa_multiflora	Rmu_co8311305.1_g000001 Rmu_sc0003507.1_g000005 Rmu_sc0003898.1_g000007 Rmu_sc0003950.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006450 Rroxscaffold_2G00101890 Rroxscaffold_4G00318720 Rroxscaffold_7G00212100
rosa_rugosa	Rorug02G0379700 Rorug02G0379800
rosa_samantha	Rh1DG126100 Rh2AG432600 Rh2AG432900 Rh2BG441200 Rh2CG418400 Rh2CG418700 Rh2DG451300 Rh5DG528000 Rh6AG057400 Rh6BG052000 Rh6CG049900 Rh6DG046100 Rh7AG420100 Rh7CG439600
rosa_wichuraiana	Rw1G009770 Rw2G035320 Rw5G045830 Rw6G005220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	474
AciI	CCGC	1 cut(s)	539
AclWI	GGATC	1 cut(s)	829
AcoI	YGGCCR	1 cut(s)	745
AcsI	RAATTY	4 cut(s)	69, 421, 549, 672
AcuI	CTGAAG	1 cut(s)	846
AfiI	CCNNNNNNNGG	3 cut(s)	121, 132, 868
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	271
AluBI	AGCT	5 cut(s)	34, 180, 202, 613, 733
AluI	AGCT	5 cut(s)	34, 180, 202, 613, 733
Alw21I	GWGCWC	1 cut(s)	338
Alw44I	GTGCAC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	829
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	2 cut(s)	123, 745
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	2 cut(s)	348, 650
ApoI	RAATTY	4 cut(s)	69, 421, 549, 672
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	3 cut(s)	152, 488, 610
BaeGI	GKGCMC	2 cut(s)	338, 479
BalI	TGGCCA	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	360, 662
BccI	CCATC	2 cut(s)	425, 464
BceAI	ACGGC	2 cut(s)	110, 846
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	2 cut(s)	293, 480
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	2 cut(s)	349, 651
BlsI	GCNGC	2 cut(s)	350, 652
Bme1390I	CCNGG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	5 cut(s)	66, 334, 370, 646, 727
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 132, 868
Bse118I	RCCGGY	2 cut(s)	143, 383
Bse1I	ACTGG	1 cut(s)	583
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	3 cut(s)	121, 132, 868
BseMII	CTCAG	1 cut(s)	530
BseNI	ACTGG	1 cut(s)	583
BseSI	GKGCMC	2 cut(s)	338, 479
BseXI	GCAGC	2 cut(s)	360, 662
BsgI	GTGCAG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	125, 747
BshNI	GGYRCC	1 cut(s)	474
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	3 cut(s)	121, 144, 384
BslI	CCNNNNNNNGG	3 cut(s)	121, 132, 868
BsmI	GAATGC	1 cut(s)	806
BsnI	GGCC	2 cut(s)	125, 747
Bsp1286I	GDGCHC	2 cut(s)	338, 479
Bsp143I	GATC	3 cut(s)	109, 493, 821
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	539
BspANI	GGCC	2 cut(s)	125, 747
BspCNI	CTCAG	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	476
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	1 cut(s)	829
BspT107I	GGYRCC	1 cut(s)	474
BspTI	CTTAAG	1 cut(s)	203
BsrFI	RCCGGY	2 cut(s)	143, 383
BsrI	ACTGG	1 cut(s)	583
BssAI	RCCGGY	2 cut(s)	143, 383
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	109, 493, 821
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	690
Bst6I	CTCTTC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	2 cut(s)	380, 656
BstC8I	GCNNGC	3 cut(s)	36, 246, 611
BstDEI	CTNAG	3 cut(s)	80, 516, 729
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	718
BstKTI	GATC	3 cut(s)	112, 496, 824
BstMBI	GATC	3 cut(s)	109, 493, 821
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 656
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	2 cut(s)	293, 480
BstSLI	GKGCMC	2 cut(s)	338, 479
BstV1I	GCAGC	2 cut(s)	360, 662
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	821
BstYI	RGATCY	1 cut(s)	821
BsuRI	GGCC	2 cut(s)	125, 747
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	3 cut(s)	36, 246, 611
CaiI	CAGNNNCTG	1 cut(s)	659
Cfr10I	RCCGGY	2 cut(s)	143, 383
Cfr13I	GGNCC	1 cut(s)	123
CviAII	CATG	3 cut(s)	259, 436, 749
DdeI	CTNAG	3 cut(s)	80, 516, 729
DpnI	GATC	3 cut(s)	111, 495, 823
DpnII	GATC	3 cut(s)	109, 493, 821
EaeI	YGGCCR	1 cut(s)	745
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	846
EcoRI	GAATTC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	3 cut(s)	262, 439, 752
FatI	CATG	3 cut(s)	258, 435, 748
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	349, 651
FokI	GGATG	1 cut(s)	705
Fsp4HI	GCNGC	2 cut(s)	349, 651
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	2 cut(s)	349, 651
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	2 cut(s)	125, 747
HapII	CCGG	3 cut(s)	121, 144, 384
Hin1II	CATG	3 cut(s)	262, 439, 752
HinfI	GANTC	5 cut(s)	13, 165, 544, 626, 872
HpaII	CCGG	3 cut(s)	121, 144, 384
HphI	GGTGA	3 cut(s)	152, 488, 610
Hpy166II	GTNNAC	3 cut(s)	52, 336, 601
Hpy188I	TCNGA	4 cut(s)	75, 519, 555, 826
Hpy8I	GTNNAC	3 cut(s)	52, 336, 601
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4V	TGCA	5 cut(s)	23, 289, 295, 336, 804
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 656
HpyF3I	CTNAG	3 cut(s)	80, 516, 729
Hsp92II	CATG	3 cut(s)	262, 439, 752
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	109, 493, 821
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	2 cut(s)	360, 662
LweI	GCATC	5 cut(s)	66, 334, 370, 646, 727
MaeI	CTAG	1 cut(s)	500
MaeIII	GTNAC	4 cut(s)	41, 158, 854, 863
MalI	GATC	3 cut(s)	111, 495, 823
MboI	GATC	3 cut(s)	109, 493, 821
MboII	GAAGA	4 cut(s)	275, 542, 809, 839
MflI	RGATCY	1 cut(s)	821
MhlI	GDGCHC	2 cut(s)	338, 479
MlsI	TGGCCA	1 cut(s)	747
MluCI	AATT	7 cut(s)	69, 342, 421, 549, 672, 724, 780
MluNI	TGGCCA	1 cut(s)	747
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	6 cut(s)	116, 227, 364, 616, 640, 783
Mox20I	TGGCCA	1 cut(s)	747
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	4 cut(s)	204, 576, 588, 714
MslI	CAYNNNNRTG	1 cut(s)	753
Msp20I	TGGCCA	1 cut(s)	747
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	3 cut(s)	121, 144, 384
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	806
MwoI	GCNNNNNNNGC	6 cut(s)	35, 186, 254, 380, 389, 656
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	109, 493, 821
NlaIII	CATG	3 cut(s)	262, 439, 752
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	439
PctI	GAATGC	1 cut(s)	806
PfeI	GAWTC	4 cut(s)	13, 165, 626, 872
PkrI	GCNGC	2 cut(s)	350, 652
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	123
PstI	CTGCAG	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	821
PvuI	CGATCG	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	4 cut(s)	204, 576, 588, 714
SatI	GCNGC	2 cut(s)	349, 651
Sau3AI	GATC	3 cut(s)	109, 493, 821
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	338, 479
SfaNI	GCATC	5 cut(s)	66, 334, 370, 646, 727
SfcI	CTRYAG	2 cut(s)	293, 480
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	7 cut(s)	69, 342, 421, 549, 672, 724, 780
SsiI	CCGC	1 cut(s)	539
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	690
TaqI	TCGA	4 cut(s)	96, 108, 168, 465
TasI	AATT	7 cut(s)	69, 342, 421, 549, 672, 724, 780
TfiI	GAWTC	4 cut(s)	13, 165, 626, 872
Tru1I	TTAA	4 cut(s)	204, 576, 588, 714
Tru9I	TTAA	4 cut(s)	204, 576, 588, 714
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	348, 650
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	4 cut(s)	543, 683, 810, 874
TspGWI	ACGGA	2 cut(s)	146, 618
TspRI	CASTG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	334
XapI	RAATTY	4 cut(s)	69, 421, 549, 672
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.