Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003941.1

Orthogroup ID

OG0003483

Physical Location & Seq

Genomic Coordinates Reverse (-)

58432 .. 62693

Gene Structure 4262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgctgactgcgattcgtgatgtttgcaagcttgtctttacgcagctcactagttgggtgatttattctgatgaggagcggatgtttaataaagaaattactgttggccttatacgcagtgaactgctaaaccttgcagagtacaatagttttggcagtcaggagtggaatactagttttgccattcaagctttgcttgctagtaatctcaaggatgaaattggaccaacgcttgctagaggacacgacttcataaagaaatctcaggtcaaggacaacccttctggtgacttcaaaagcatgtaccgccacatttctaaaggatcgtggactttctccaatcaagattatggatggcaagtttctgattgcactgcagaaggtttaaaggtctccattggagaagagggagattttcatttcagatatggttttgggcggcgaagcagtggtgttggtgatggcggtggggattggggcatggagttgtttggccttgaattgggatttgatggtactgggtttttacagggtttggatggagctcatggattgttgattattggggcatggagcctcatctcctctcgggaggaggggaaggttgctaaggagatcgacgaagctgttgtattgatcgctaaggtttctgcaggggagagggaagaagagataaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

226

Amino Acids

24.96

Weight (kDa)

4.81

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_Cnot1	PF25097	1 - 50	4.2e-13	Cnot1 ARM repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701
rosa_multiflora	Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233470 Rroxscaffold_3G00234220
rosa_samantha	Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900
rosa_wichuraiana	Rw3G022420 Rw4G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	79
AciI	CCGC	4 cut(s)	79, 307, 439, 465
AclWI	GGATC	1 cut(s)	331
AfaI	GTAC	3 cut(s)	143, 305, 517
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	3 cut(s)	188, 295, 500
AhlI	ACTAGT	2 cut(s)	50, 173
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	5 cut(s)	31, 46, 191, 545, 626
AluI	AGCT	5 cut(s)	31, 46, 191, 545, 626
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	588
AoxI	GGCC	2 cut(s)	106, 493
ApeKI	GCWGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	70, 299, 470
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	4 cut(s)	348, 455, 506, 533
BcoDI	GTCTC	1 cut(s)	397
BcuI	ACTAGT	2 cut(s)	50, 173
BfaI	CTAG	4 cut(s)	51, 174, 201, 237
BfmI	CTRYAG	2 cut(s)	375, 651
BisI	GCNGC	2 cut(s)	44, 440
BlsI	GCNGC	2 cut(s)	45, 441
Bme18I	GGWCC	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	575
BmrI	ACTGGG	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	528
Bpu10I	CCTNAGC	2 cut(s)	609, 642
BpuEI	CTTGAG	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	1 cut(s)	523
BseGI	GGATG	4 cut(s)	87, 220, 359, 544
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	3 cut(s)	89, 574, 608
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	108, 495
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	588
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	108, 495
Bso31I	GGTCTC	1 cut(s)	397
BsoBI	CYCGRG	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	3 cut(s)	323, 615, 636
BspACI	CCGC	4 cut(s)	79, 307, 439, 465
BspANI	GGCC	2 cut(s)	108, 495
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	575
BspMAI	CTGCAG	2 cut(s)	379, 655
BspPI	GGATC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	397
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	523
BssMI	GATC	3 cut(s)	323, 615, 636
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	2 cut(s)	399, 663
BstC8I	GCNNGC	3 cut(s)	29, 198, 234
BstDEI	CTNAG	3 cut(s)	264, 609, 642
BstF5I	GGATG	4 cut(s)	87, 220, 359, 544
BstKTI	GATC	3 cut(s)	326, 618, 639
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	323, 615, 636
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 188, 197, 306
BstNSI	RCATGY	1 cut(s)	304
BstSFI	CTRYAG	2 cut(s)	375, 651
BstV1I	GCAGC	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	108, 495
BtsCI	GGATG	4 cut(s)	87, 220, 359, 544
BtsI	GCAGTG	3 cut(s)	124, 372, 454
BtsIMutI	CAGTG	3 cut(s)	124, 372, 454
Cac8I	GCNNGC	3 cut(s)	29, 198, 234
Cfr13I	GGNCC	1 cut(s)	224
Csp6I	GTAC	3 cut(s)	142, 304, 516
CviAII	CATG	4 cut(s)	301, 481, 548, 570
CviJI	RGCY	8 cut(s)	31, 46, 108, 191, 495, 545, 576, 626
CviKI_1	RGCY	8 cut(s)	31, 46, 108, 191, 495, 545, 576, 626
CviQI	GTAC	3 cut(s)	142, 304, 516
DdeI	CTNAG	3 cut(s)	264, 609, 642
DpnI	GATC	3 cut(s)	325, 617, 638
DpnII	GATC	3 cut(s)	323, 615, 636
DraI	TTTAAA	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	399, 663
EarI	CTCTTC	2 cut(s)	399, 663
Ecl136II	GAGCTC	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	588
EcoICRI	GAGCTC	1 cut(s)	545
EcoT38I	GRGCYC	1 cut(s)	547
FaeI	CATG	4 cut(s)	304, 484, 551, 573
FaiI	YATR	8 cut(s)	113, 254, 302, 351, 429, 482, 549, 571
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 180, 212
FatI	CATG	4 cut(s)	300, 480, 547, 569
Fnu4HI	GCNGC	2 cut(s)	44, 440
FokI	GGATG	4 cut(s)	94, 227, 366, 551
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	2 cut(s)	44, 440
FspBI	CTAG	4 cut(s)	51, 174, 201, 237
GluI	GCNGC	2 cut(s)	44, 440
HaeIII	GGCC	2 cut(s)	108, 495
Hin1II	CATG	4 cut(s)	304, 484, 551, 573
HindIII	AAGCTT	2 cut(s)	29, 189
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	3 cut(s)	70, 299, 470
Hpy166II	GTNNAC	2 cut(s)	122, 330
Hpy188I	TCNGA	3 cut(s)	70, 367, 425
Hpy188III	TCNNGA	4 cut(s)	17, 161, 344, 590
Hpy8I	GTNNAC	2 cut(s)	122, 330
Hpy99I	CGWCG	1 cut(s)	623
HpyAV	CCTTC	3 cut(s)	291, 374, 595
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	5 cut(s)	27, 137, 372, 377, 653
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 188, 197, 306
HpyF3I	CTNAG	3 cut(s)	264, 609, 642
Hsp92II	CATG	4 cut(s)	304, 484, 551, 573
Kzo9I	GATC	3 cut(s)	323, 615, 636
LmnI	GCTCC	3 cut(s)	76, 542, 573
LpnPI	CCDG	6 cut(s)	146, 251, 270, 504, 515, 639
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	4 cut(s)	51, 174, 201, 237
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	325, 617, 638
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	3 cut(s)	323, 615, 636
MboII	GAAGA	3 cut(s)	416, 677, 680
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	3 cut(s)	96, 219, 500
MnlI	CCTC	8 cut(s)	67, 233, 400, 586, 587, 589, 595, 654
MseI	TTAA	2 cut(s)	87, 386
MwoI	GCNNNNNNNGC	4 cut(s)	114, 188, 197, 306
NdeII	GATC	3 cut(s)	323, 615, 636
NlaIII	CATG	4 cut(s)	304, 484, 551, 573
NlaIV	GGNNCC	1 cut(s)	575
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	45, 441
Psp124BI	GAGCTC	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	575
PspPI	GGNCC	1 cut(s)	224
PstI	CTGCAG	2 cut(s)	379, 655
RsaI	GTAC	3 cut(s)	143, 305, 517
RsaNI	GTAC	3 cut(s)	142, 304, 516
SacI	GAGCTC	1 cut(s)	547
SaqAI	TTAA	2 cut(s)	87, 386
SatI	GCNGC	2 cut(s)	44, 440
Sau3AI	GATC	3 cut(s)	323, 615, 636
Sau96I	GGNCC	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	547
SfcI	CTRYAG	2 cut(s)	375, 651
SinI	GGWCC	1 cut(s)	224
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SpeI	ACTAGT	2 cut(s)	50, 173
Sse9I	AATT	3 cut(s)	96, 219, 500
SsiI	CCGC	4 cut(s)	79, 307, 439, 465
SspMI	CTAG	4 cut(s)	51, 174, 201, 237
SstI	GAGCTC	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	618
TasI	AATT	3 cut(s)	96, 219, 500
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	87, 386
Tru9I	TTAA	2 cut(s)	87, 386
TscAI	CASTG	3 cut(s)	124, 379, 454
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	3 cut(s)	231, 241, 407
TspRI	CASTG	3 cut(s)	124, 379, 454
VpaK11BI	GGWCC	1 cut(s)	224
XceI	RCATGY	1 cut(s)	304
XspI	CTAG	4 cut(s)	51, 174, 201, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.