Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004057.1

Orthogroup ID

OG0002121

Physical Location & Seq

Genomic Coordinates Reverse (-)

30758 .. 31192

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggttcctccctcctatgcccagaacttacaacaagactacctcaatgcacacaatgcggctcgcacacaagtcggagtgtcaaacatcatgtgggacagcactgttgctgcctacgctctgaactacaccaagtcaaggatcgcggattgcaatctcgtccactcaggagggccttacggcgaaaatttagccaaaggcagcggctcattcacggccactgctgcggttaatttgtgggtggcggaaaagccttactacaactacacttccaatgcttgcaccggcggaaagcagtgcctgcactatactcaagttgtgtgggcagagtctgttaggttggggtgtgctaggcttcaatgtagcaatttgtggtggtttgttacatgcagctatgatccaccaggcaactacatcggggagcatccatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

144

Amino Acids

15.89

Weight (kDa)

6.87

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	15 - 132	1.1e-16	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50050 AT1G50050 AT1G50060
fragaria_vesca	FvH4_2g02850 FvH4_2g02921 FvH4_2g02940 FvH4_2g02950
malus_domestica	MD10G1112900.v1.1
prunus_persica	Prupe.8G152700_v2.0.a1
pyrus_communis	pycom10g09770
rosa_chinensis	RchiOBHm_Chr6g0247661 RchiOBHm_Chr6g0247731 RchiOBHm_Chr6g0247741
rosa_laevigata	RLG00000015183 RLG00000015184
rosa_multiflora	Rmu_sc0003092.1_g000034 Rmu_sc0004057.1_g000007 Rmu_sc0009569.1_g000001 Rmu_sc0009569.1_g000002 Rmu_sc0039728.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433280 Rroxscaffold_180G00433300 Rroxscaffold_180G00433310 Rroxscaffold_7G00213700 Rroxscaffold_7G00213710 Rroxscaffold_7G00213720
rosa_rugosa	Rorug05G0528100 Rorug05G0528200
rosa_samantha	Rh6AG043100 Rh6AG043200 Rh6AG043300 Rh6BG037100 Rh6BG037700 Rh6BG037900 Rh6CG036600 Rh6CG036700 Rh6DG033600 Rh6DG033700
rosa_wichuraiana	Rw6G003650 Rw6G003700 Rw6G003710 Rw6G003720 Rw6G003740 Rw6G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	6 cut(s)	59, 146, 204, 227, 245, 288
AclWI	GGATC	2 cut(s)	149, 392
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	1 cut(s)	393
AluI	AGCT	1 cut(s)	393
AlwI	GGATC	2 cut(s)	149, 392
AlwNI	CAGNNNCTG	2 cut(s)	301, 332
AoxI	GGCC	2 cut(s)	173, 216
ApeKI	GCWGC	4 cut(s)	110, 201, 224, 390
ApoI	RAATTY	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	173
BbvI	GCAGC	4 cut(s)	97, 211, 213, 402
BceAI	ACGGC	2 cut(s)	196, 231
BcgI	CGANNNNNNTGC	4 cut(s)	55, 89, 397, 431
BciT130I	CCWGG	1 cut(s)	405
BfaI	CTAG	1 cut(s)	351
BisI	GCNGC	6 cut(s)	60, 111, 202, 205, 225, 391
BlsI	GCNGC	6 cut(s)	61, 112, 203, 206, 226, 392
Bme1390I	CCNGG	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	405
BseGI	GGATG	1 cut(s)	424
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	4 cut(s)	97, 211, 213, 402
BsgI	GTGCAG	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	175, 218
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	175, 218
Bsp143I	GATC	2 cut(s)	141, 397
BspACI	CCGC	6 cut(s)	59, 146, 204, 227, 245, 288
BspANI	GGCC	2 cut(s)	175, 218
BspCNI	CTCAG	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	149, 392
BsrFI	RCCGGY	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	284
BssMI	GATC	2 cut(s)	141, 397
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	106
BstAPI	GCANNNNNTGC	2 cut(s)	56, 301
BstC8I	GCNNGC	3 cut(s)	64, 280, 302
BstDEI	CTNAG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	2 cut(s)	144, 400
BstMBI	GATC	2 cut(s)	141, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 116, 224, 301
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	4 cut(s)	97, 211, 213, 402
BsuRI	GGCC	2 cut(s)	175, 218
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	2 cut(s)	219, 302
BtsIMutI	CAGTG	3 cut(s)	102, 219, 302
Cac8I	GCNNGC	3 cut(s)	64, 280, 302
CaiI	CAGNNNCTG	2 cut(s)	301, 332
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	173
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	2 cut(s)	91, 387
CviJI	RGCY	8 cut(s)	62, 175, 194, 207, 218, 253, 355, 393
CviKI_1	RGCY	8 cut(s)	62, 175, 194, 207, 218, 253, 355, 393
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	2 cut(s)	143, 399
DpnII	GATC	2 cut(s)	141, 397
EaeI	YGGCCR	1 cut(s)	216
EciI	GGCGGA	2 cut(s)	260, 303
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	403
FaeI	CATG	2 cut(s)	94, 390
FaiI	YATR	6 cut(s)	18, 92, 309, 388, 396, 430
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	90, 386
Fnu4HI	GCNGC	6 cut(s)	60, 111, 202, 205, 225, 391
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	6 cut(s)	60, 111, 202, 205, 225, 391
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	6 cut(s)	60, 111, 202, 205, 225, 391
HaeIII	GGCC	2 cut(s)	175, 218
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	2 cut(s)	94, 390
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	77, 123
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	5 cut(s)	50, 153, 282, 304, 390
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 116, 224, 301
HpyF3I	CTNAG	1 cut(s)	166
Hsp92II	CATG	2 cut(s)	94, 390
Kzo9I	GATC	2 cut(s)	141, 397
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	6 cut(s)	35, 153, 298, 314, 390, 417
Lsp1109I	GCAGC	4 cut(s)	97, 211, 213, 402
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	2 cut(s)	143, 399
MboI	GATC	2 cut(s)	141, 397
MluCI	AATT	3 cut(s)	187, 232, 367
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	4 cut(s)	18, 22, 53, 164
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	4 cut(s)	56, 116, 224, 301
NdeII	GATC	2 cut(s)	141, 397
NlaIII	CATG	2 cut(s)	94, 390
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	390
PkrI	GCNGC	6 cut(s)	61, 112, 203, 206, 226, 392
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	173
PstNI	CAGNNNCTG	2 cut(s)	301, 332
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	6 cut(s)	60, 111, 202, 205, 225, 391
Sau3AI	GATC	2 cut(s)	141, 397
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	405
SetI	ASST	3 cut(s)	45, 341, 395
SgrAI	CRCCGGYG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
Sse9I	AATT	3 cut(s)	187, 232, 367
SsiI	CCGC	6 cut(s)	59, 146, 204, 227, 245, 288
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	1 cut(s)	106
TasI	AATT	3 cut(s)	187, 232, 367
TauI	GCSGC	2 cut(s)	62, 207
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	3 cut(s)	109, 226, 302
TseI	GCWGC	4 cut(s)	110, 201, 224, 390
TspRI	CASTG	3 cut(s)	109, 226, 302
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	390
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.