Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004755.1

Orthogroup ID

OG0001683

Physical Location & Seq

Genomic Coordinates Forward (+)

89659 .. 92485

Gene Structure 2827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggctagaggttctaaacaccacgattgccccataacctcaaagacaaaaagaaaattttgttctcaaccttctcagtcagtagtggacgatggtatactagaggctggggttgatactagggaagaacaagcttctgaaccctttacagatgcagatgaacctctaactggtccatttccgggaagtcctcatgatccatcggtgaagagctttaaaagtcatgcagcagctgctatatggtttaataagttaggacttgcatctagagttggttgtaggcaaattgggggttatttgacattgcttgaggcttggatatatgaacacttccggaatgtagtttcccctcatcttcgtgttgaatattcagagaatgagccacgaatgaatcgttgggaacctaaaaaatatgcaggtttgtcacttgtttacgtgcaagctcttcgccaacagcttgatcatatgcaagcacaagaggtcatatgggatctatatcgtggtcatagggatgctcatccattattggaaatcacattttacacaggaatgcttaagtgtttagatattgtggaaccatattatcctgatagggttgtgtatgagtactttgatggattgtggcaaagatggcgagatcacgtagtagatgccaaccgaagcactctagttaagttttcatatgactgcactccagaatacttatcatggtaccaaaacatcacacatccctatgttcaacaccctgatcgggtgtctgctgtagttgattcaaatgaggaaaatcatccattacagcgtatatcacgggcattgtgtatcactcaatctattgttgatgttggtcgagatgatgctataacacaaccaatgaagctatatgaggcaattgaaagcatccaacatatatttttaggtgaccaagtgaaaaatacacgcacacatcaactttggcggcgtgtacaaaataatgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

325

Amino Acids

37.71

Weight (kDa)

6.1

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	77 - 224	6.1e-16	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001683)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02784 FvH4_5g13891 FvH4_6g36961
malus_domestica	MD06G1202700.v1.1 MD17G1027800.v1.1 MD17G1028300.v1.1
pyrus_communis	pycom06g17890 pycom06g17910 pycom06g17920 pycom17g02270 pycom17g02380 pycom17g02450
rosa_chinensis	RchiOBHm_Chr1g0332031 RchiOBHm_Chr5g0043391 RchiOBHm_Chr6g0252591
rosa_laevigata	RLG00000029816 RLG00000030362
rosa_multiflora	Rmu_sc0000431.1_g000002 Rmu_sc0001114.1_g000010 Rmu_sc0003724.1_g000008 Rmu_sc0003994.1_g000024 Rmu_sc0004755.1_g000019 Rmu_sc0005212.1_g000002 Rmu_sc0007943.1_g000002
rosa_rugosa	Rorug02G0188700 Rorug02G0515000 Rorug04G0360500 Rorug04G0360500 Rorug04G0360600 Rorug05G0596000 Rorug06G0366600 Rorug06G0366600 Rorug07G0140000
rosa_samantha	Rh1CG084500 Rh2AG079400 Rh2AG243900 Rh2AG367300 Rh2DG078500 Rh3BG356900 Rh3CG353700 Rh3DG356300 Rh3DG356400 Rh4CG179300 Rh4DG064600 Rh5BG277000 Rh5BG297900 Rh5DG307300
rosa_wichuraiana	Rw3G028120 Rw4G015280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	407
Acc65I	GGTACC	1 cut(s)	711
AccB1I	GGYRCC	1 cut(s)	711
AccI	GTMKAC	1 cut(s)	97
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	1 cut(s)	955
AclWI	GGATC	2 cut(s)	191, 498
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	3 cut(s)	608, 713, 963
AfiI	CCNNNNNNNGG	3 cut(s)	170, 182, 751
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	4 cut(s)	365, 740, 774, 893
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AluBI	AGCT	6 cut(s)	134, 213, 233, 443, 457, 877
AluI	AGCT	6 cut(s)	134, 213, 233, 443, 457, 877
AlwI	GGATC	2 cut(s)	191, 498
AlwNI	CAGNNNCTG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	227, 230, 233
ApoI	RAATTY	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	217, 929
AvaII	GGWCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	711
BbvI	GCAGC	3 cut(s)	220, 239, 242
BccI	CCATC	4 cut(s)	86, 208, 608, 624
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BclI	TGATCA	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	183
BfaI	CTAG	5 cut(s)	6, 101, 120, 267, 668
BfmI	CTRYAG	1 cut(s)	762
BfrI	CTTAAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	4 cut(s)	228, 231, 234, 956
BlsI	GCNGC	4 cut(s)	229, 232, 235, 957
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	3 cut(s)	402, 576, 713
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	6 cut(s)	142, 272, 502, 640, 844, 906
BpmI	CTGGAG	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	183
BsaAI	YACGTR	2 cut(s)	436, 643
BsaBI	GATNNNNATC	2 cut(s)	495, 516
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 182, 751
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	302
Bse8I	GATNNNNATC	2 cut(s)	495, 516
BseAI	TCCGGA	1 cut(s)	333
BseGI	GGATG	5 cut(s)	517, 517, 727, 787, 897
BseJI	GATNNNNATC	2 cut(s)	495, 516
BseLI	CCNNNNNNNGG	3 cut(s)	170, 182, 751
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	220, 239, 242
BseYI	CCCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	673
BshNI	GGYRCC	1 cut(s)	711
BsiSI	CCGG	2 cut(s)	182, 334
BslI	CCNNNNNNNGG	3 cut(s)	170, 182, 751
BsmI	GAATGC	1 cut(s)	555
Bsp13I	TCCGGA	1 cut(s)	333
Bsp1407I	TGTACA	1 cut(s)	961
Bsp143I	GATC	5 cut(s)	196, 460, 490, 637, 748
BspACI	CCGC	1 cut(s)	955
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	402, 576, 713
BspMI	ACCTGC	1 cut(s)	407
BspPI	GGATC	2 cut(s)	191, 498
BspQI	GCTCTTC	2 cut(s)	203, 450
BspT107I	GGYRCC	1 cut(s)	711
BspTI	CTTAAG	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	961
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	5 cut(s)	196, 460, 490, 637, 748
BssNAI	GTATAC	1 cut(s)	98
Bst1107I	GTATAC	1 cut(s)	98
Bst6I	CTCTTC	2 cut(s)	203, 450
BstAFI	CTTAAG	1 cut(s)	554
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstAUI	TGTACA	1 cut(s)	961
BstBAI	YACGTR	2 cut(s)	436, 643
BstC8I	GCNNGC	2 cut(s)	441, 471
BstDEI	CTNAG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	917
BstF5I	GGATG	5 cut(s)	517, 517, 727, 787, 897
BstKTI	GATC	5 cut(s)	199, 463, 493, 640, 751
BstMBI	GATC	5 cut(s)	196, 460, 490, 637, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 631
BstPI	GGTNACC	1 cut(s)	917
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	762
BstV1I	GCAGC	3 cut(s)	220, 239, 242
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BstZ17I	GTATAC	1 cut(s)	98
BtsCI	GGATG	5 cut(s)	517, 517, 727, 787, 897
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	2 cut(s)	441, 471
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	3 cut(s)	607, 712, 962
CviAII	CATG	3 cut(s)	194, 224, 708
CviQI	GTAC	3 cut(s)	607, 712, 962
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	5 cut(s)	198, 462, 492, 639, 750
DpnII	GATC	5 cut(s)	196, 460, 490, 637, 748
DraI	TTTAAA	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	203, 450
EarI	CTCTTC	2 cut(s)	203, 450
Eco47I	GGWCC	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	917
EcoO65I	GGTNACC	1 cut(s)	917
FaeI	CATG	3 cut(s)	197, 227, 711
FatI	CATG	3 cut(s)	193, 223, 707
FauNDI	CATATG	3 cut(s)	465, 485, 682
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	4 cut(s)	228, 231, 234, 956
FokI	GGATG	5 cut(s)	504, 524, 714, 774, 884
Fsp4HI	GCNGC	4 cut(s)	228, 231, 234, 956
FspBI	CTAG	5 cut(s)	6, 101, 120, 267, 668
GluI	GCNGC	4 cut(s)	228, 231, 234, 956
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	678
HapII	CCGG	2 cut(s)	182, 334
Hin1II	CATG	3 cut(s)	197, 227, 711
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	2 cut(s)	391, 770
HpaII	CCGG	2 cut(s)	182, 334
HphI	GGTGA	2 cut(s)	217, 929
Hpy166II	GTNNAC	4 cut(s)	88, 98, 433, 962
Hpy188I	TCNGA	2 cut(s)	139, 373
Hpy188III	TCNNGA	6 cut(s)	194, 267, 334, 587, 695, 848
Hpy8I	GTNNAC	4 cut(s)	88, 98, 433, 962
HpyAV	CCTTC	1 cut(s)	81
HpyCH4IV	ACGT	2 cut(s)	435, 642
HpyCH4V	TGCA	7 cut(s)	155, 227, 263, 416, 439, 469, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 631
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	2 cut(s)	435, 642
Hsp92II	CATG	3 cut(s)	197, 227, 711
Kpn2I	TCCGGA	1 cut(s)	333
KpnI	GGTACC	1 cut(s)	715
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	5 cut(s)	196, 460, 490, 637, 748
LguI	GCTCTTC	2 cut(s)	203, 450
LpnPI	CCDG	9 cut(s)	93, 156, 195, 347, 402, 531, 600, 708, 759
Lsp1109I	GCAGC	3 cut(s)	220, 239, 242
LweI	GCATC	6 cut(s)	142, 272, 502, 640, 844, 906
MaeI	CTAG	5 cut(s)	6, 101, 120, 267, 668
MaeII	ACGT	2 cut(s)	435, 642
MaeIII	GTNAC	2 cut(s)	423, 917
MalI	GATC	5 cut(s)	198, 462, 492, 639, 750
MboI	GATC	5 cut(s)	196, 460, 490, 637, 748
MboII	GAAGA	4 cut(s)	137, 220, 347, 437
MfeI	CAATTG	1 cut(s)	888
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	3 cut(s)	56, 285, 888
MmeI	TCCRAC	1 cut(s)	925
MnlI	CCTC	9 cut(s)	49, 97, 174, 201, 304, 360, 472, 772, 877
MroI	TCCGGA	1 cut(s)	333
MseI	TTAA	4 cut(s)	216, 246, 555, 672
MslI	CAYNNNNRTG	4 cut(s)	357, 510, 548, 732
MspA1I	CMGCKG	1 cut(s)	233
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	2 cut(s)	182, 334
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	555
MwoI	GCNNNNNNNGC	2 cut(s)	233, 631
NciI	CCSGG	1 cut(s)	183
NdeI	CATATG	3 cut(s)	465, 485, 682
NdeII	GATC	5 cut(s)	196, 460, 490, 637, 748
NlaIII	CATG	3 cut(s)	197, 227, 711
NlaIV	GGNNCC	3 cut(s)	402, 576, 713
NmuCI	GTSAC	2 cut(s)	423, 917
PagI	TCATGA	1 cut(s)	193
PciSI	GCTCTTC	2 cut(s)	203, 450
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	391, 770
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	229, 232, 235, 957
Ppu21I	YACGTR	2 cut(s)	436, 643
PspEI	GGTNACC	1 cut(s)	917
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	402, 576, 713
PspPI	GGNCC	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	3 cut(s)	608, 713, 963
RsaNI	GTAC	3 cut(s)	607, 712, 962
RseI	CAYNNNNRTG	4 cut(s)	357, 510, 548, 732
SapI	GCTCTTC	2 cut(s)	203, 450
SaqAI	TTAA	4 cut(s)	216, 246, 555, 672
SatI	GCNGC	4 cut(s)	228, 231, 234, 956
Sau3AI	GATC	5 cut(s)	196, 460, 490, 637, 748
Sau96I	GGNCC	1 cut(s)	173
ScaI	AGTACT	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	183
SfaNI	GCATC	6 cut(s)	142, 272, 502, 640, 844, 906
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	4 cut(s)	357, 510, 548, 732
SmlI	CTYRAG	2 cut(s)	308, 554
SmoI	CTYRAG	2 cut(s)	308, 554
Sse9I	AATT	3 cut(s)	56, 285, 888
SsiI	CCGC	1 cut(s)	955
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	5 cut(s)	6, 101, 120, 267, 668
StyD4I	CCNGG	1 cut(s)	181
TaiI	ACGT	2 cut(s)	438, 645
TaqI	TCGA	1 cut(s)	847
TasI	AATT	3 cut(s)	56, 285, 888
TatI	WGTACW	2 cut(s)	606, 961
TauI	GCSGC	1 cut(s)	958
TfiI	GAWTC	2 cut(s)	391, 770
Tru1I	TTAA	4 cut(s)	216, 246, 555, 672
Tru9I	TTAA	4 cut(s)	216, 246, 555, 672
TseFI	GTSAC	2 cut(s)	423, 917
TseI	GCWGC	3 cut(s)	227, 230, 233
Tsp45I	GTSAC	2 cut(s)	423, 917
TspDTI	ATGAA	5 cut(s)	174, 339, 404, 669, 887
Vha464I	CTTAAG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	5 cut(s)	6, 101, 120, 267, 668
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.